Wall clock time and date at job start Mon Mar 8 2021 09:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47094 * 64.99896 * 4 3 2 6 6 C 1.35997 * 116.99950 * 180.02562 * 5 4 3 7 7 C 1.39155 * 120.07095 * 179.73207 * 6 5 4 8 8 O 1.35986 * 120.07406 * 359.97438 * 7 6 5 9 9 C 1.42902 * 117.00403 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47520 * 180.02562 * 9 8 7 11 11 H 1.08996 * 112.85114 * 316.19417 * 10 9 8 12 12 C 1.53782 * 113.61558 * 87.50055 * 10 9 8 13 13 C 1.53789 * 87.08082 * 139.97997 * 12 10 9 14 14 H 1.08998 * 113.60890 * 89.11860 * 13 12 10 15 15 O 1.42898 * 113.69037 * 220.00545 * 13 12 10 16 16 C 1.42899 * 114.00063 * 247.53573 * 15 13 12 17 17 C 1.52998 * 109.47163 * 60.00319 * 16 15 13 18 18 C 1.53000 * 109.46657 * 180.02562 * 16 15 13 19 19 C 1.52999 * 109.47249 * 299.99991 * 16 15 13 20 20 C 1.53782 * 113.61388 * 184.99989 * 10 9 8 21 21 C 1.38566 * 119.84931 * 179.72303 * 7 6 5 22 22 C 1.38243 * 120.00225 * 0.54610 * 21 7 6 23 23 C 1.50693 * 119.92566 * 179.70067 * 22 21 7 24 24 O 1.42901 * 109.47545 * 300.02401 * 23 22 21 25 25 Si 1.86305 * 109.46924 * 180.02562 * 23 22 21 26 26 C 1.38250 * 120.14142 * 359.72740 * 22 21 7 27 27 C 1.38235 * 120.15273 * 359.97438 * 26 22 21 28 28 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 32 32 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 33 33 H 1.08995 * 109.47203 * 184.99963 * 4 3 2 34 34 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 35 35 H 1.09007 * 109.46852 * 300.00155 * 9 8 7 36 36 H 1.08996 * 109.46861 * 59.99681 * 9 8 7 37 37 H 1.08995 * 113.61892 * 254.52823 * 12 10 9 38 38 H 1.08994 * 113.61366 * 25.43681 * 12 10 9 39 39 H 1.09006 * 109.46760 * 59.99623 * 17 16 15 40 40 H 1.08996 * 109.47198 * 179.97438 * 17 16 15 41 41 H 1.08993 * 109.47265 * 299.99973 * 17 16 15 42 42 H 1.09000 * 109.47705 * 60.00264 * 18 16 15 43 43 H 1.09008 * 109.46998 * 180.02562 * 18 16 15 44 44 H 1.08996 * 109.47588 * 299.99940 * 18 16 15 45 45 H 1.09005 * 109.46577 * 59.99996 * 19 16 15 46 46 H 1.09003 * 109.46844 * 179.97438 * 19 16 15 47 47 H 1.08999 * 109.47260 * 300.00545 * 19 16 15 48 48 H 1.09002 * 113.61513 * 334.56277 * 20 10 9 49 49 H 1.09003 * 113.61661 * 105.47146 * 20 10 9 50 50 H 1.08003 * 119.99555 * 180.27301 * 21 7 6 51 51 H 1.09007 * 109.47440 * 60.02714 * 23 22 21 52 52 H 0.96695 * 114.00201 * 180.02562 * 24 23 22 53 53 H 1.48503 * 109.99990 * 298.67996 * 25 23 22 54 54 H 1.48493 * 110.00251 * 60.00169 * 25 23 22 55 55 H 1.08007 * 119.92014 * 179.97438 * 26 22 21 56 56 H 1.08004 * 120.00258 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3040 0.3970 -1.3808 7 6 5.7929 -0.1919 -2.5429 8 8 4.9338 -0.5871 -3.5201 9 6 5.5066 -1.1846 -4.6850 10 6 4.3937 -1.5604 -5.6652 11 1 3.5413 -2.0326 -5.1770 12 6 4.0047 -0.4210 -6.6219 13 6 3.8972 -1.4885 -7.7237 14 1 2.9081 -1.9401 -7.7990 15 8 4.4105 -1.0628 -8.9876 16 6 3.4126 -0.9125 -9.9994 17 6 2.3875 0.1321 -9.5535 18 6 4.0724 -0.4566 -11.3024 19 6 2.7099 -2.2526 -10.2257 20 6 4.8947 -2.3231 -6.9031 21 6 7.1576 -0.3700 -2.7043 22 6 8.0292 0.0268 -1.7073 23 6 9.5125 -0.1739 -1.8817 24 8 9.7885 -1.5659 -2.0496 25 14 10.4062 0.4590 -0.3745 26 6 7.5429 0.6067 -0.5504 27 6 6.1831 0.7929 -0.3855 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8463 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 3.9785 2.1764 0.0902 34 1 3.8508 0.5684 0.8427 35 1 6.1852 -0.4762 -5.1604 36 1 6.0581 -2.0805 -4.3999 37 1 3.0530 0.0499 -6.3759 38 1 4.8043 0.3005 -6.7896 39 1 2.8882 1.0868 -9.3923 40 1 1.6266 0.2470 -10.3255 41 1 1.9177 -0.1930 -8.6254 42 1 4.8025 -1.2011 -11.6200 43 1 3.3111 -0.3416 -12.0742 44 1 4.5733 0.4979 -11.1415 45 1 2.2401 -2.5777 -9.2974 46 1 1.9485 -2.1378 -10.9972 47 1 3.4403 -2.9968 -10.5433 48 1 5.9376 -2.1215 -7.1477 49 1 4.6615 -3.3877 -6.8841 50 1 7.5400 -0.8228 -3.6072 51 1 9.8521 0.3725 -2.7617 52 1 10.7264 -1.7696 -2.1672 53 1 10.1531 1.9127 -0.2070 54 1 9.9522 -0.2779 0.8320 55 1 8.2270 0.9149 0.2265 56 1 5.8058 1.2466 0.5191 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16901878_14598386.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:26 Heat of formation + Delta-G solvation = -140.415575 kcal Electronic energy + Delta-G solvation = -34154.023570 eV Core-core repulsion = 29611.197263 eV Total energy + Delta-G solvation = -4542.826308 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.217 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.86910 -40.96744 -39.87183 -39.11102 -38.52207 -38.09004 -37.02091 -33.94125 -32.55584 -31.68431 -30.97115 -29.47644 -28.37412 -28.30152 -27.38820 -26.65937 -26.39399 -24.95287 -23.80127 -22.85368 -22.23171 -20.84891 -20.64938 -19.70319 -18.58909 -18.31062 -18.02172 -17.86202 -17.59725 -17.10438 -16.82200 -16.60795 -16.27148 -16.21079 -16.08403 -15.93200 -15.81019 -15.65609 -15.31316 -14.69811 -14.51316 -14.42256 -14.16964 -14.08768 -13.72039 -13.70863 -13.47525 -13.36238 -13.30616 -13.15331 -13.03376 -12.82827 -12.76059 -12.66814 -12.60342 -12.45903 -12.33257 -12.27725 -12.13061 -12.02039 -11.91744 -11.80282 -11.70386 -11.38118 -11.21395 -10.75240 -10.38900 -10.33525 -9.89223 -8.98716 -4.93521 0.04964 0.11013 1.30027 1.65308 1.96498 2.01744 2.03145 2.40930 2.71452 2.72185 3.35497 3.42325 3.50696 3.56241 3.64957 3.73368 3.77001 3.80089 3.88059 3.89828 3.96105 3.99667 4.04872 4.08904 4.12117 4.16557 4.19445 4.25059 4.31121 4.37572 4.42329 4.43791 4.47216 4.50269 4.53014 4.60280 4.62248 4.66004 4.74006 4.74591 4.77010 4.79618 4.83012 4.86412 4.89835 4.91920 4.94647 4.97901 5.10240 5.13978 5.22531 5.28567 5.31352 5.36304 5.45156 5.95171 6.11507 6.38950 6.44836 6.90984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.060 3.940 4 C 0.050 3.950 5 O -0.316 6.316 6 C 0.089 3.911 7 C 0.089 3.911 8 O -0.318 6.318 9 C 0.069 3.931 10 C -0.104 4.104 11 H 0.101 0.899 12 C -0.147 4.147 13 C 0.063 3.937 14 H 0.100 0.900 15 O -0.379 6.379 16 C 0.098 3.902 17 C -0.174 4.174 18 C -0.139 4.139 19 C -0.177 4.177 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.079 4.079 24 O -0.564 6.564 25 Si 0.779 3.221 26 C -0.136 4.136 27 C -0.167 4.167 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.150 0.850 51 H 0.095 0.905 52 H 0.404 0.596 53 H -0.285 1.285 54 H -0.296 1.296 55 H 0.128 0.872 56 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 1.667 -0.850 2.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.025 4.025 5 O -0.230 6.230 6 C 0.043 3.957 7 C 0.043 3.957 8 O -0.232 6.232 9 C -0.006 4.006 10 C -0.123 4.123 11 H 0.119 0.881 12 C -0.184 4.184 13 C 0.005 3.995 14 H 0.117 0.883 15 O -0.299 6.299 16 C 0.059 3.941 17 C -0.232 4.232 18 C -0.196 4.196 19 C -0.234 4.234 20 C -0.157 4.157 21 C -0.167 4.167 22 C -0.087 4.087 23 C -0.188 4.188 24 O -0.374 6.374 25 Si 0.685 3.315 26 C -0.153 4.153 27 C -0.185 4.185 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.107 0.893 50 H 0.168 0.832 51 H 0.112 0.888 52 H 0.255 0.745 53 H -0.212 1.212 54 H -0.224 1.224 55 H 0.145 0.855 56 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.644 1.836 -0.214 1.957 hybrid contribution -0.851 0.263 0.023 0.891 sum -0.207 2.098 -0.191 2.117 Atomic orbital electron populations 1.22907 0.79361 1.03686 1.01020 1.87925 1.21570 1.28527 1.95661 1.22725 0.90791 0.85322 1.02768 1.23179 0.94680 0.99161 0.85448 1.86219 1.18863 1.77487 1.40467 1.18470 0.83795 0.99924 0.93465 1.18508 0.89291 0.99130 0.88741 1.86159 1.34566 1.75252 1.27207 1.22961 0.96523 0.97462 0.83626 1.22254 0.98465 0.98566 0.93006 0.88055 1.23572 1.02302 0.97190 0.95363 1.23617 0.98219 0.95458 0.82162 0.88252 1.88008 1.34496 1.87609 1.19780 1.21689 0.88672 0.94936 0.88812 1.22446 0.99314 0.99180 1.02212 1.21791 1.01453 1.01634 0.94715 1.22452 1.01307 0.96842 1.02820 1.23195 1.00635 0.99731 0.92150 1.21044 0.90103 1.03771 1.01771 1.19452 0.95409 0.99854 0.93997 1.24845 0.94162 0.87699 1.12093 1.86442 1.33081 1.21678 1.96209 0.94412 0.87582 0.75880 0.73662 1.20751 0.95291 1.02145 0.97144 1.21196 0.92929 1.04766 0.99638 0.92382 0.93429 0.89168 0.92057 0.88233 0.88057 0.90827 0.91209 0.91123 0.91350 0.89959 0.92511 0.90478 0.92332 0.92121 0.89710 0.92423 0.91990 0.90363 0.91995 0.88872 0.89313 0.83227 0.88771 0.74489 1.21218 1.22427 0.85498 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 11.01 113.37 1.25 1.28 16 2 O -0.42 -3.23 10.67 -144.34 -1.54 -4.77 16 3 C 0.06 0.12 6.32 71.98 0.45 0.57 16 4 C 0.05 0.16 5.12 71.98 0.37 0.52 16 5 O -0.32 -3.64 9.89 -73.46 -0.73 -4.37 16 6 C 0.09 1.00 6.70 22.57 0.15 1.15 16 7 C 0.09 1.04 6.70 22.57 0.15 1.19 16 8 O -0.32 -3.73 9.92 -79.53 -0.79 -4.51 16 9 C 0.07 0.34 4.58 71.98 0.33 0.67 16 10 C -0.10 -0.29 4.01 -10.27 -0.04 -0.33 16 11 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 12 C -0.15 -0.49 7.47 31.12 0.23 -0.26 16 13 C 0.06 0.13 2.82 31.12 0.09 0.22 16 14 H 0.10 0.03 5.54 -2.39 -0.01 0.01 16 15 O -0.38 -1.94 10.00 -148.98 -1.49 -3.43 16 16 C 0.10 0.15 1.11 -10.79 -0.01 0.14 16 17 C -0.17 -0.07 8.39 71.98 0.60 0.53 16 18 C -0.14 -0.06 8.84 71.98 0.64 0.58 16 19 C -0.18 0.12 8.38 71.98 0.60 0.72 16 20 C -0.12 -0.08 7.47 31.12 0.23 0.15 16 21 C -0.15 -1.26 8.60 22.35 0.19 -1.07 16 22 C -0.09 -0.64 5.42 -19.86 -0.11 -0.75 16 23 C -0.08 -0.07 2.81 71.23 0.20 0.13 16 24 O -0.56 -0.46 12.74 -148.98 -1.90 -2.35 16 25 Si 0.78 -1.11 29.78 68.60 2.04 0.93 16 26 C -0.14 -1.03 8.66 22.27 0.19 -0.84 16 27 C -0.17 -1.20 9.04 22.35 0.20 -1.00 16 28 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.05 -0.01 8.14 -2.38 -0.02 -0.02 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.09 16 32 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.10 -0.23 7.66 -2.39 -0.02 -0.25 16 34 H 0.07 0.17 7.66 -2.39 -0.02 0.15 16 35 H 0.07 0.23 7.35 -2.38 -0.02 0.21 16 36 H 0.07 0.24 7.68 -2.39 -0.02 0.23 16 37 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.08 0.41 7.89 -2.39 -0.02 0.39 16 39 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 40 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.06 0.03 7.02 -2.39 -0.02 0.01 16 42 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 44 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.06 -0.07 6.24 -2.38 -0.01 -0.09 16 46 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.09 0.09 8.10 -2.39 -0.02 0.07 16 49 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.15 0.78 6.30 -2.91 -0.02 0.77 16 51 H 0.09 -0.31 7.96 -2.38 -0.02 -0.33 16 52 H 0.40 -4.08 8.74 -74.06 -0.65 -4.73 16 53 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 54 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 55 H 0.13 0.69 4.87 -2.91 -0.01 0.68 16 56 H 0.16 0.22 6.30 -2.91 -0.02 0.20 16 Total: 0.00 -21.07 442.11 1.58 -19.49 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: 0.25 Total: -4.59 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.73 Total: 3.61 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -6.44 Total: -19.44 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.04 Total: 0.93 kcal Total: -21.07 1.58 -19.49 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_14598386.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.923 kcal (2) G-P(sol) polarization free energy of solvation -21.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds