Wall clock time and date at job start Mon Mar 8 2021 10:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00106 * 2 1 4 4 C 1.53008 * 109.47213 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46804 * 65.00196 * 4 3 2 6 6 C 1.35995 * 117.00076 * 180.02562 * 5 4 3 7 7 C 1.39147 * 120.07504 * 180.02562 * 6 5 4 8 8 O 1.35998 * 120.07548 * 0.02562 * 7 6 5 9 9 C 1.42900 * 117.00211 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46923 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47655 * 54.99345 * 10 9 8 12 12 C 1.52998 * 109.47106 * 174.99961 * 10 9 8 13 13 C 1.52998 * 109.47429 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46788 * 299.99799 * 13 12 10 15 15 H 1.09008 * 109.47201 * 299.99563 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47329 * 59.99953 * 14 13 12 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 14 13 19 19 C 1.38565 * 119.85587 * 180.29519 * 7 6 5 20 20 C 1.38242 * 119.99549 * 359.46427 * 19 7 6 21 21 C 1.50705 * 119.92824 * 180.25478 * 20 19 7 22 22 O 1.42900 * 109.47014 * 300.25921 * 21 20 19 23 23 Si 1.86298 * 109.47241 * 180.25793 * 21 20 19 24 24 C 1.38256 * 120.14781 * 0.51296 * 20 19 7 25 25 C 1.38245 * 120.14419 * 359.76504 * 24 20 19 26 26 H 1.09007 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47311 * 300.00238 * 1 2 3 28 28 H 1.09001 * 109.46647 * 60.00423 * 1 2 3 29 29 H 1.09002 * 109.46943 * 60.00133 * 3 2 1 30 30 H 1.08998 * 109.46972 * 299.99753 * 3 2 1 31 31 H 1.09002 * 109.47083 * 305.00208 * 4 3 2 32 32 H 1.08996 * 109.46905 * 184.99799 * 4 3 2 33 33 H 1.08993 * 109.47628 * 59.99506 * 9 8 7 34 34 H 1.09006 * 109.46786 * 299.99643 * 9 8 7 35 35 H 1.08997 * 109.47366 * 59.99207 * 12 10 9 36 36 H 1.09009 * 109.46785 * 299.99476 * 12 10 9 37 37 H 1.08997 * 109.47384 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47329 * 59.99386 * 13 12 10 39 39 H 0.96700 * 114.00311 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.47215 * 60.00152 * 17 14 13 41 41 H 1.08999 * 109.47164 * 180.02562 * 17 14 13 42 42 H 1.08997 * 109.47655 * 300.00305 * 18 17 14 43 43 H 1.09005 * 109.46908 * 179.97438 * 18 17 14 44 44 H 1.08000 * 120.00120 * 179.70072 * 19 7 6 45 45 H 1.09000 * 109.47009 * 60.25486 * 21 20 19 46 46 H 0.96699 * 114.00236 * 299.99883 * 22 21 20 47 47 H 1.48496 * 110.00081 * 58.68026 * 23 21 20 48 48 H 1.48500 * 110.00038 * 180.02562 * 23 21 20 49 49 H 1.08001 * 119.92451 * 179.73885 * 24 20 19 50 50 H 1.07998 * 119.99602 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3039 0.3971 -1.3809 7 6 5.7933 -0.1862 -2.5456 8 8 4.9347 -0.5750 -3.5259 9 6 5.5080 -1.1669 -4.6934 10 6 4.3956 -1.5359 -5.6768 11 1 3.7907 -0.6543 -5.8888 12 6 5.0149 -2.0542 -6.9763 13 6 3.9025 -2.4238 -7.9595 14 6 3.0201 -3.5125 -7.3455 15 1 3.6253 -4.3940 -7.1334 16 8 1.9814 -3.8583 -8.2640 17 6 2.4008 -2.9944 -6.0459 18 6 3.5132 -2.6248 -5.0627 19 6 7.1571 -0.3751 -2.7020 20 6 8.0290 0.0257 -1.7069 21 6 9.5124 -0.1753 -1.8811 22 8 9.7879 -1.5674 -2.0491 23 14 10.4060 0.4571 -0.3738 24 6 7.5428 0.6057 -0.5499 25 6 6.1829 0.7918 -0.3851 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5684 0.8427 32 1 3.9785 2.1764 0.0902 33 1 6.0581 -2.0650 -4.4127 34 1 6.1879 -0.4568 -5.1642 35 1 5.6197 -2.9358 -6.7643 36 1 5.6438 -1.2786 -7.4136 37 1 4.3437 -2.7926 -8.8855 38 1 3.2973 -1.5425 -8.1716 39 1 1.3820 -4.5443 -7.9399 40 1 1.7956 -2.1130 -6.2580 41 1 1.7726 -3.7702 -5.6082 42 1 4.1184 -3.5062 -4.8507 43 1 3.0720 -2.2552 -4.1370 44 1 7.5391 -0.8320 -3.6030 45 1 9.8522 0.3710 -2.7610 46 1 9.5114 -2.1160 -1.3023 47 1 9.9286 -0.2578 0.8370 48 1 11.8699 0.2652 -0.5334 49 1 8.2269 0.9136 0.2270 50 1 5.8056 1.2447 0.5198 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_16901878_16737256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:25 Heat of formation + Delta-G solvation = -184.902692 kcal Electronic energy + Delta-G solvation = -30435.888388 eV Core-core repulsion = 26202.208212 eV Total energy + Delta-G solvation = -4233.680176 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.186 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.68153 -40.34237 -39.57343 -38.87317 -38.46791 -37.07289 -36.55024 -32.57319 -31.85618 -31.80056 -31.31760 -30.48459 -27.44999 -26.95970 -26.07983 -24.57330 -23.81436 -22.97800 -22.46860 -21.84519 -20.86289 -19.61461 -18.56415 -18.19908 -18.01445 -17.84837 -17.24838 -17.05082 -16.68545 -16.47649 -16.17725 -16.03063 -15.86334 -15.81756 -15.68152 -15.45815 -15.09254 -14.70757 -14.57436 -14.18156 -13.97368 -13.73442 -13.60828 -13.39550 -13.25138 -13.20341 -13.00146 -12.72879 -12.57907 -12.35361 -12.28762 -12.14008 -12.12330 -11.89981 -11.82953 -11.65704 -11.54401 -11.52548 -11.09566 -10.69881 -10.68510 -10.60674 -9.70963 -8.76659 -4.96001 0.25143 0.36254 1.28819 1.60335 1.96168 2.15381 2.18743 2.63174 2.72169 3.18601 3.35901 3.62555 3.63836 3.68250 3.72550 3.80361 3.91971 3.95846 4.01709 4.07789 4.14388 4.17872 4.22307 4.25278 4.32756 4.35172 4.37150 4.40860 4.41872 4.43948 4.46520 4.50581 4.54511 4.58954 4.64578 4.69690 4.77156 4.80213 4.96240 5.05600 5.06669 5.11090 5.16023 5.17619 5.19229 5.35246 5.42786 5.43854 5.63938 6.08129 6.16213 6.40080 6.63824 6.73093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.059 3.941 5 O -0.293 6.293 6 C 0.110 3.890 7 C 0.105 3.895 8 O -0.298 6.298 9 C 0.062 3.938 10 C -0.086 4.086 11 H 0.085 0.915 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.103 3.897 15 H 0.054 0.946 16 O -0.570 6.570 17 C -0.151 4.151 18 C -0.111 4.111 19 C -0.148 4.148 20 C -0.117 4.117 21 C -0.071 4.071 22 O -0.531 6.531 23 Si 0.684 3.316 24 C -0.113 4.113 25 C -0.171 4.171 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.379 0.621 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.376 0.624 47 H -0.260 1.260 48 H -0.257 1.257 49 H 0.131 0.869 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 2.817 2.749 4.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.017 4.017 5 O -0.207 6.207 6 C 0.064 3.936 7 C 0.059 3.941 8 O -0.212 6.212 9 C -0.013 4.013 10 C -0.104 4.104 11 H 0.103 0.897 12 C -0.148 4.148 13 C -0.148 4.148 14 C 0.044 3.956 15 H 0.072 0.928 16 O -0.375 6.375 17 C -0.189 4.189 18 C -0.148 4.148 19 C -0.166 4.166 20 C -0.117 4.117 21 C -0.181 4.181 22 O -0.337 6.337 23 Si 0.586 3.414 24 C -0.131 4.131 25 C -0.189 4.189 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.226 0.774 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.156 0.844 45 H 0.135 0.865 46 H 0.224 0.776 47 H -0.185 1.185 48 H -0.183 1.183 49 H 0.148 0.852 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.269 3.082 2.346 3.882 hybrid contribution -0.557 -1.296 0.611 1.537 sum -0.826 1.786 2.957 3.552 Atomic orbital electron populations 1.22776 0.80560 1.03148 1.00087 1.87964 1.20021 1.26912 1.95431 1.22559 0.91296 0.85995 1.01578 1.22901 0.94079 0.98197 0.86497 1.86254 1.18813 1.76819 1.38802 1.18275 0.83494 0.99048 0.92825 1.18223 0.88725 0.98754 0.88353 1.86182 1.33672 1.75156 1.26186 1.22911 0.96509 0.97343 0.84571 1.21202 0.96065 0.99647 0.93512 0.89704 1.21479 0.97649 1.01561 0.94072 1.21432 0.96321 0.98553 0.98517 1.21855 0.88527 0.96850 0.88379 0.92764 1.86514 1.44129 1.61682 1.45209 1.22269 0.98617 1.02147 0.95861 1.21509 0.96613 0.97989 0.98735 1.20903 0.90541 1.04075 1.01125 1.19949 0.95901 1.01302 0.94592 1.24989 0.94549 0.85950 1.12627 1.86586 1.84363 1.16789 1.45965 0.94996 0.79242 0.91658 0.75536 1.20681 0.94796 1.00407 0.97173 1.21006 0.93362 1.05366 0.99204 0.89385 0.93946 0.93818 0.90959 0.91942 0.91000 0.90252 0.91899 0.91857 0.91296 0.90776 0.90868 0.90955 0.77423 0.90969 0.91584 0.91886 0.90487 0.84433 0.86458 0.77629 1.18453 1.18263 0.85171 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.38 -1.00 10.67 -40.08 -0.43 -1.43 16 3 C 0.06 -0.01 6.32 37.16 0.23 0.23 16 4 C 0.06 0.00 5.12 37.16 0.19 0.19 16 5 O -0.29 -1.02 9.89 -40.70 -0.40 -1.42 16 6 C 0.11 0.31 6.70 -39.12 -0.26 0.05 16 7 C 0.11 0.33 6.70 -39.12 -0.26 0.06 16 8 O -0.30 -1.01 9.46 -34.23 -0.32 -1.34 16 9 C 0.06 0.03 4.12 37.16 0.15 0.19 16 10 C -0.09 -0.01 2.43 -90.62 -0.22 -0.23 16 11 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 12 C -0.11 0.10 5.20 -26.73 -0.14 -0.04 16 13 C -0.11 -0.04 5.57 -26.73 -0.15 -0.19 16 14 C 0.10 0.06 3.47 -26.73 -0.09 -0.04 16 15 H 0.05 0.00 8.14 -51.92 -0.42 -0.42 16 16 O -0.57 -0.96 13.32 -35.23 -0.47 -1.42 16 17 C -0.15 -0.03 5.55 -26.73 -0.15 -0.18 16 18 C -0.11 -0.05 5.10 -26.73 -0.14 -0.19 16 19 C -0.15 -0.25 8.59 -39.46 -0.34 -0.58 16 20 C -0.12 -0.09 5.39 -104.61 -0.56 -0.65 16 21 C -0.07 0.00 2.82 36.01 0.10 0.10 16 22 O -0.53 -0.72 12.76 -35.23 -0.45 -1.17 16 23 Si 0.68 -0.59 29.78 -169.99 -5.06 -5.66 16 24 C -0.11 -0.01 8.66 -39.57 -0.34 -0.35 16 25 C -0.17 -0.10 9.04 -39.46 -0.36 -0.46 16 26 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 27 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.07 -0.04 7.66 -51.93 -0.40 -0.44 16 32 H 0.08 -0.20 7.67 -51.93 -0.40 -0.60 16 33 H 0.06 0.00 7.65 -51.93 -0.40 -0.40 16 34 H 0.06 -0.02 7.68 -51.93 -0.40 -0.42 16 35 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.07 -0.12 8.14 -51.92 -0.42 -0.54 16 37 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.38 -0.82 9.08 45.56 0.41 -0.40 16 40 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.08 0.16 7.82 -51.93 -0.41 -0.25 16 44 H 0.14 0.11 6.30 -52.49 -0.33 -0.22 16 45 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 46 H 0.38 -0.47 8.70 45.56 0.40 -0.07 16 47 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 48 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 49 H 0.13 -0.25 4.87 -52.49 -0.26 -0.51 16 50 H 0.14 -0.25 6.30 -52.49 -0.33 -0.58 16 LS Contribution 397.55 15.07 5.99 5.99 Total: 0.00 -8.17 397.55 -10.00 -18.17 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -7.63 Total: -10.74 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.22 Total: -0.99 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -2.07 Total: -6.78 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.06 Total: -5.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -8.17 -10.00 -18.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_16737256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.733 kcal (2) G-P(sol) polarization free energy of solvation -8.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds