Wall clock time and date at job start Mon Mar 8 2021 10:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00106 * 2 1 4 4 C 1.53008 * 109.47213 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46804 * 65.00196 * 4 3 2 6 6 C 1.35995 * 117.00076 * 180.02562 * 5 4 3 7 7 C 1.39147 * 120.07504 * 180.02562 * 6 5 4 8 8 O 1.35998 * 120.07548 * 0.02562 * 7 6 5 9 9 C 1.42900 * 117.00211 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46923 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47655 * 54.99345 * 10 9 8 12 12 C 1.52998 * 109.47106 * 174.99961 * 10 9 8 13 13 C 1.52998 * 109.47429 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46788 * 299.99799 * 13 12 10 15 15 H 1.09008 * 109.47201 * 299.99563 * 14 13 12 16 16 O 1.42903 * 109.47256 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47329 * 59.99953 * 14 13 12 18 18 C 1.52998 * 109.46901 * 299.99578 * 17 14 13 19 19 C 1.38565 * 119.85587 * 180.29519 * 7 6 5 20 20 C 1.38242 * 119.99549 * 359.46427 * 19 7 6 21 21 C 1.50705 * 119.92824 * 180.25478 * 20 19 7 22 22 O 1.42900 * 109.47014 * 300.25921 * 21 20 19 23 23 Si 1.86298 * 109.47241 * 180.25793 * 21 20 19 24 24 C 1.38256 * 120.14781 * 0.51296 * 20 19 7 25 25 C 1.38245 * 120.14419 * 359.76504 * 24 20 19 26 26 H 1.09007 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47311 * 300.00238 * 1 2 3 28 28 H 1.09001 * 109.46647 * 60.00423 * 1 2 3 29 29 H 1.09002 * 109.46943 * 60.00133 * 3 2 1 30 30 H 1.08998 * 109.46972 * 299.99753 * 3 2 1 31 31 H 1.09002 * 109.47083 * 305.00208 * 4 3 2 32 32 H 1.08996 * 109.46905 * 184.99799 * 4 3 2 33 33 H 1.08993 * 109.47628 * 59.99506 * 9 8 7 34 34 H 1.09006 * 109.46786 * 299.99643 * 9 8 7 35 35 H 1.08997 * 109.47366 * 59.99207 * 12 10 9 36 36 H 1.09009 * 109.46785 * 299.99476 * 12 10 9 37 37 H 1.08997 * 109.47384 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47329 * 59.99386 * 13 12 10 39 39 H 0.96700 * 114.00311 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.47215 * 60.00152 * 17 14 13 41 41 H 1.08999 * 109.47164 * 180.02562 * 17 14 13 42 42 H 1.08997 * 109.47655 * 300.00305 * 18 17 14 43 43 H 1.09005 * 109.46908 * 179.97438 * 18 17 14 44 44 H 1.08000 * 120.00120 * 179.70072 * 19 7 6 45 45 H 1.09000 * 109.47009 * 60.25486 * 21 20 19 46 46 H 0.96699 * 114.00236 * 299.99883 * 22 21 20 47 47 H 1.48496 * 110.00081 * 58.68026 * 23 21 20 48 48 H 1.48500 * 110.00038 * 180.02562 * 23 21 20 49 49 H 1.08001 * 119.92451 * 179.73885 * 24 20 19 50 50 H 1.07998 * 119.99602 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3039 0.3971 -1.3809 7 6 5.7933 -0.1862 -2.5456 8 8 4.9347 -0.5750 -3.5259 9 6 5.5080 -1.1669 -4.6934 10 6 4.3956 -1.5359 -5.6768 11 1 3.7907 -0.6543 -5.8888 12 6 5.0149 -2.0542 -6.9763 13 6 3.9025 -2.4238 -7.9595 14 6 3.0201 -3.5125 -7.3455 15 1 3.6253 -4.3940 -7.1334 16 8 1.9814 -3.8583 -8.2640 17 6 2.4008 -2.9944 -6.0459 18 6 3.5132 -2.6248 -5.0627 19 6 7.1571 -0.3751 -2.7020 20 6 8.0290 0.0257 -1.7069 21 6 9.5124 -0.1753 -1.8811 22 8 9.7879 -1.5674 -2.0491 23 14 10.4060 0.4571 -0.3738 24 6 7.5428 0.6057 -0.5499 25 6 6.1829 0.7918 -0.3851 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8508 0.5684 0.8427 32 1 3.9785 2.1764 0.0902 33 1 6.0581 -2.0650 -4.4127 34 1 6.1879 -0.4568 -5.1642 35 1 5.6197 -2.9358 -6.7643 36 1 5.6438 -1.2786 -7.4136 37 1 4.3437 -2.7926 -8.8855 38 1 3.2973 -1.5425 -8.1716 39 1 1.3820 -4.5443 -7.9399 40 1 1.7956 -2.1130 -6.2580 41 1 1.7726 -3.7702 -5.6082 42 1 4.1184 -3.5062 -4.8507 43 1 3.0720 -2.2552 -4.1370 44 1 7.5391 -0.8320 -3.6030 45 1 9.8522 0.3710 -2.7610 46 1 9.5114 -2.1160 -1.3023 47 1 9.9286 -0.2578 0.8370 48 1 11.8699 0.2652 -0.5334 49 1 8.2269 0.9136 0.2270 50 1 5.8056 1.2447 0.5198 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16901878_16737256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:24 Heat of formation + Delta-G solvation = -184.724821 kcal Electronic energy + Delta-G solvation = -30435.880675 eV Core-core repulsion = 26202.208212 eV Total energy + Delta-G solvation = -4233.672463 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.186 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74446 -40.39233 -39.62162 -38.93953 -38.51598 -37.12857 -36.61735 -32.59775 -31.88742 -31.83612 -31.34086 -30.53503 -27.44476 -26.98439 -26.10827 -24.57025 -23.84594 -23.00587 -22.51891 -21.87972 -20.89878 -19.67251 -18.60866 -18.26223 -18.07931 -17.85657 -17.30714 -17.12170 -16.67772 -16.51296 -16.19997 -16.05850 -15.90508 -15.86068 -15.70637 -15.50185 -15.11283 -14.75829 -14.60515 -14.23825 -14.02075 -13.77802 -13.58996 -13.43547 -13.25916 -13.19203 -13.02841 -12.75097 -12.61288 -12.36441 -12.29978 -12.17815 -12.16320 -11.93673 -11.82010 -11.69423 -11.58623 -11.56433 -11.11976 -10.74661 -10.70657 -10.62819 -9.75970 -8.85819 -4.90459 0.19390 0.30004 1.32351 1.62493 1.97039 2.13745 2.16283 2.57763 2.77639 3.20076 3.39385 3.60602 3.63350 3.65359 3.71296 3.80521 3.91788 3.99958 4.05204 4.08415 4.12172 4.17825 4.26926 4.28067 4.31969 4.33718 4.36118 4.43772 4.45054 4.47710 4.49140 4.51466 4.55499 4.59891 4.64883 4.71974 4.79631 4.82490 4.94548 5.02313 5.03208 5.06055 5.11651 5.15285 5.16481 5.29815 5.38015 5.39982 5.62479 6.06373 6.17121 6.47578 6.58019 6.83069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.052 3.948 5 O -0.321 6.321 6 C 0.089 3.911 7 C 0.083 3.917 8 O -0.320 6.320 9 C 0.062 3.938 10 C -0.081 4.081 11 H 0.072 0.928 12 C -0.103 4.103 13 C -0.112 4.112 14 C 0.102 3.898 15 H 0.063 0.937 16 O -0.589 6.589 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.118 4.118 21 C -0.081 4.081 22 O -0.549 6.549 23 Si 0.770 3.230 24 C -0.112 4.112 25 C -0.167 4.167 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.393 0.607 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.141 0.859 45 H 0.125 0.875 46 H 0.385 0.615 47 H -0.281 1.281 48 H -0.304 1.304 49 H 0.153 0.847 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 3.310 3.573 4.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.019 4.019 4 C -0.023 4.023 5 O -0.235 6.235 6 C 0.043 3.957 7 C 0.037 3.963 8 O -0.234 6.234 9 C -0.013 4.013 10 C -0.100 4.100 11 H 0.091 0.909 12 C -0.140 4.140 13 C -0.150 4.150 14 C 0.044 3.956 15 H 0.081 0.919 16 O -0.397 6.397 17 C -0.183 4.183 18 C -0.144 4.144 19 C -0.171 4.171 20 C -0.119 4.119 21 C -0.189 4.189 22 O -0.357 6.357 23 Si 0.675 3.325 24 C -0.130 4.130 25 C -0.186 4.186 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.243 0.757 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.159 0.841 45 H 0.142 0.858 46 H 0.235 0.765 47 H -0.207 1.207 48 H -0.232 1.232 49 H 0.170 0.830 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.301 3.573 3.166 4.784 hybrid contribution -0.741 -1.470 0.369 1.687 sum -0.440 2.103 3.535 4.137 Atomic orbital electron populations 1.22887 0.79542 1.03576 1.00942 1.87916 1.21391 1.28688 1.95649 1.22759 0.91298 0.85196 1.02610 1.23161 0.94219 0.99402 0.85483 1.86216 1.19354 1.77489 1.40485 1.18579 0.83739 0.99883 0.93497 1.18518 0.89288 0.99747 0.88742 1.86150 1.34700 1.75613 1.26978 1.22997 0.96657 0.97647 0.84026 1.21157 0.95852 0.99019 0.93951 0.90908 1.21432 0.97311 1.02189 0.93083 1.21455 0.96544 0.98141 0.98847 1.21897 0.88456 0.97180 0.88108 0.91904 1.86476 1.44769 1.62516 1.45978 1.22206 0.98423 1.01843 0.95844 1.21441 0.96770 0.98249 0.97936 1.20993 0.90202 1.04227 1.01653 1.20083 0.96102 1.01088 0.94615 1.25240 0.94236 0.85548 1.13887 1.86558 1.84536 1.17604 1.46983 0.94032 0.75190 0.90112 0.73138 1.20957 0.95040 0.99645 0.97321 1.21302 0.93287 1.04580 0.99394 0.89290 0.92392 0.93604 0.88336 0.92338 0.90609 0.87684 0.91426 0.90998 0.90377 0.89805 0.90896 0.91994 0.75744 0.92173 0.90830 0.91294 0.92480 0.84091 0.85757 0.76539 1.20697 1.23228 0.82958 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 11.01 113.37 1.25 1.25 16 2 O -0.42 -2.52 10.67 -144.34 -1.54 -4.06 16 3 C 0.06 0.00 6.32 71.98 0.45 0.45 16 4 C 0.05 -0.01 5.12 71.98 0.37 0.36 16 5 O -0.32 -2.60 9.89 -73.45 -0.73 -3.33 16 6 C 0.09 0.57 6.70 22.57 0.15 0.72 16 7 C 0.08 0.61 6.70 22.57 0.15 0.76 16 8 O -0.32 -2.77 9.46 -79.66 -0.75 -3.52 16 9 C 0.06 0.14 4.12 71.98 0.30 0.43 16 10 C -0.08 -0.11 2.43 -10.79 -0.03 -0.13 16 11 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 12 C -0.10 0.16 5.20 30.59 0.16 0.32 16 13 C -0.11 -0.14 5.57 30.59 0.17 0.03 16 14 C 0.10 0.15 3.47 30.59 0.11 0.26 16 15 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 16 O -0.59 -2.20 13.32 -148.98 -1.98 -4.18 16 17 C -0.15 -0.21 5.55 30.59 0.17 -0.04 16 18 C -0.11 -0.25 5.10 30.60 0.16 -0.09 16 19 C -0.15 -0.58 8.59 22.35 0.19 -0.39 16 20 C -0.12 -0.12 5.39 -19.86 -0.11 -0.23 16 21 C -0.08 0.05 2.82 71.24 0.20 0.25 16 22 O -0.55 -1.37 12.76 -148.98 -1.90 -3.27 16 23 Si 0.77 -1.99 29.78 68.60 2.04 0.05 16 24 C -0.11 0.10 8.66 22.28 0.19 0.30 16 25 C -0.17 -0.09 9.04 22.35 0.20 0.11 16 26 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 27 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.08 -0.11 7.66 -2.39 -0.02 -0.13 16 32 H 0.11 -0.64 7.67 -2.39 -0.02 -0.66 16 33 H 0.07 0.06 7.65 -2.39 -0.02 0.04 16 34 H 0.07 0.00 7.68 -2.38 -0.02 -0.02 16 35 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 36 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.39 -1.60 9.08 -74.06 -0.67 -2.27 16 40 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 0.37 7.82 -2.38 -0.02 0.35 16 44 H 0.14 0.31 6.30 -2.91 -0.02 0.29 16 45 H 0.12 -0.28 7.96 -2.39 -0.02 -0.30 16 46 H 0.39 -1.02 8.70 -74.06 -0.64 -1.67 16 47 H -0.28 -0.26 7.11 99.48 0.71 0.44 16 48 H -0.30 -1.61 7.11 99.48 0.71 -0.90 16 49 H 0.15 -0.91 4.87 -2.91 -0.01 -0.92 16 50 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 Total: 0.00 -20.26 397.55 -1.11 -21.37 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -0.34 Total: -7.42 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.09 Total: 4.37 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -6.91 Total: -18.37 kcal Atomic # 14 Polarization: -1.99 SS G_CDS: 2.04 Total: 0.05 kcal Total: -20.26 -1.11 -21.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_16737256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.350 kcal (2) G-P(sol) polarization free energy of solvation -20.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds