Wall clock time and date at job start Mon Mar 8 2021 11:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00150 * 2 1 4 4 C 1.53002 * 109.47296 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47244 * 65.00215 * 4 3 2 6 6 C 1.35990 * 117.00405 * 180.02562 * 5 4 3 7 7 C 1.39151 * 120.07759 * 180.02562 * 6 5 4 8 8 O 1.35997 * 120.07246 * 0.02562 * 7 6 5 9 9 C 1.42899 * 117.00360 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47513 * 179.97438 * 9 8 7 11 11 H 1.09010 * 112.90490 * 316.25575 * 10 9 8 12 12 C 1.54054 * 113.61186 * 87.61527 * 10 9 8 13 13 C 1.53785 * 87.07296 * 89.07707 * 12 10 9 14 14 O 1.42902 * 113.61400 * 270.88015 * 13 12 10 15 15 C 1.42900 * 113.99781 * 162.82678 * 14 13 12 16 16 C 1.52992 * 113.61454 * 139.97701 * 13 12 10 17 17 F 1.39910 * 109.47110 * 326.88095 * 16 13 12 18 18 F 1.39903 * 109.47188 * 86.87663 * 16 13 12 19 19 F 1.39896 * 109.47579 * 206.87860 * 16 13 12 20 20 C 1.53782 * 87.08401 * 25.43004 * 13 12 10 21 21 C 1.38571 * 119.85721 * 180.29761 * 7 6 5 22 22 C 1.38239 * 119.99404 * 359.46832 * 21 7 6 23 23 C 1.50701 * 119.92478 * 180.25650 * 22 21 7 24 24 O 1.42903 * 109.47123 * 300.25476 * 23 22 21 25 25 Si 1.86296 * 109.47443 * 180.25452 * 23 22 21 26 26 C 1.38249 * 120.14813 * 0.50804 * 22 21 7 27 27 C 1.38239 * 120.14716 * 359.76998 * 26 22 21 28 28 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46887 * 299.99759 * 1 2 3 30 30 H 1.08995 * 109.47621 * 59.99353 * 1 2 3 31 31 H 1.09007 * 109.47147 * 60.00455 * 3 2 1 32 32 H 1.08996 * 109.47601 * 300.00316 * 3 2 1 33 33 H 1.08998 * 109.47318 * 304.99989 * 4 3 2 34 34 H 1.09004 * 109.47256 * 185.00499 * 4 3 2 35 35 H 1.09009 * 109.46750 * 59.99991 * 9 8 7 36 36 H 1.08999 * 109.47220 * 300.00047 * 9 8 7 37 37 H 1.08999 * 113.61718 * 334.53082 * 12 10 9 38 38 H 1.08996 * 113.60997 * 203.62018 * 12 10 9 39 39 H 1.09005 * 109.46972 * 182.99522 * 15 14 13 40 40 H 1.08997 * 109.47045 * 302.99021 * 15 14 13 41 41 H 1.09000 * 109.47312 * 62.99088 * 15 14 13 42 42 H 1.09000 * 113.61727 * 89.11320 * 20 13 12 43 43 H 1.08997 * 113.61517 * 219.93717 * 20 13 12 44 44 H 1.08000 * 119.99661 * 179.69923 * 21 7 6 45 45 H 1.09004 * 109.47116 * 60.25030 * 23 22 21 46 46 H 0.96708 * 113.99839 * 300.00174 * 24 23 22 47 47 H 1.48496 * 110.00263 * 179.97438 * 25 23 22 48 48 H 1.48506 * 109.99855 * 301.32077 * 25 23 22 49 49 H 1.08001 * 119.92544 * 179.74379 * 26 22 21 50 50 H 1.08005 * 120.00067 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3027 0.3977 -1.3838 7 6 5.7913 -0.1851 -2.5491 8 8 4.9319 -0.5736 -3.5289 9 6 5.5042 -1.1651 -4.6971 10 6 4.3910 -1.5350 -5.6792 11 1 3.5373 -2.0085 -5.1942 12 6 4.0038 -0.3890 -6.6332 13 6 5.0917 -0.9176 -7.5829 14 8 6.3823 -0.3512 -7.3467 15 6 7.4568 -1.0887 -7.9329 16 6 4.6872 -0.8830 -9.0580 17 9 3.3115 -1.1120 -9.1697 18 9 4.9965 0.3704 -9.5971 19 9 5.3834 -1.8755 -9.7560 20 6 4.8913 -2.2912 -6.9213 21 6 7.1550 -0.3741 -2.7067 22 6 8.0276 0.0263 -1.7120 23 6 9.5108 -0.1747 -1.8875 24 8 9.7862 -1.5667 -2.0563 25 14 10.4057 0.4572 -0.3807 26 6 7.5423 0.6058 -0.5545 27 6 6.1825 0.7919 -0.3886 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0890 35 1 6.0545 -2.0635 -4.4170 36 1 6.1837 -0.4549 -5.1682 37 1 4.2170 0.6025 -6.2338 38 1 2.9941 -0.4769 -7.0340 39 1 8.4055 -0.6243 -7.6639 40 1 7.4370 -2.1143 -7.5645 41 1 7.3474 -1.0900 -9.0174 42 1 4.1241 -2.8991 -7.4008 43 1 5.8208 -2.8359 -6.7558 44 1 7.5362 -0.8306 -3.6081 45 1 9.8499 0.3720 -2.7675 46 1 9.5102 -2.1156 -1.3094 47 1 11.8693 0.2642 -0.5410 48 1 10.1021 1.8964 -0.1759 49 1 8.2269 0.9135 0.2220 50 1 5.8059 1.2445 0.5168 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16901878_17321602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:28 Heat of formation + Delta-G solvation = -273.478801 kcal Electronic energy + Delta-G solvation = -38887.571032 eV Core-core repulsion = 33241.687981 eV Total energy + Delta-G solvation = -5645.883051 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.158 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -51.28803 -48.81902 -48.75998 -41.88018 -41.28568 -39.69406 -38.91502 -38.46538 -37.18332 -36.78566 -32.41324 -31.52924 -30.98244 -30.20301 -28.23533 -27.59229 -27.22328 -26.78507 -26.23483 -24.64884 -23.48320 -22.80260 -22.23342 -20.62553 -19.90386 -19.59922 -19.53331 -19.25974 -18.52287 -18.04877 -17.82531 -17.33355 -17.19730 -16.93554 -16.63213 -16.51478 -16.17829 -16.12081 -15.93020 -15.83043 -15.72195 -15.67651 -15.64644 -15.57122 -15.21500 -15.16517 -14.94381 -14.91933 -14.55737 -14.33563 -14.07002 -13.99646 -13.81067 -13.39764 -13.32124 -13.21212 -13.01249 -12.82885 -12.71517 -12.45560 -12.30114 -12.26065 -12.07961 -11.93782 -11.80527 -11.78371 -11.74363 -11.58761 -10.83665 -10.67215 -10.42870 -9.74651 -8.83358 -4.97369 0.21439 0.31599 1.33809 1.49550 1.65940 1.97861 2.02764 2.09094 2.17695 2.53056 2.59332 2.60624 2.80439 2.86771 3.27802 3.35619 3.46421 3.50517 3.66340 3.69387 3.82506 3.95695 4.02919 4.11488 4.20395 4.22016 4.23621 4.26564 4.30122 4.34615 4.37108 4.44887 4.47824 4.48676 4.51033 4.51999 4.55075 4.61902 4.66110 4.68005 4.73770 4.77373 4.79877 4.86503 5.01290 5.04370 5.17914 5.39877 5.63817 5.68224 6.07573 6.19661 6.58986 6.77966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.058 3.942 4 C 0.052 3.948 5 O -0.320 6.320 6 C 0.090 3.910 7 C 0.084 3.916 8 O -0.319 6.319 9 C 0.070 3.930 10 C -0.093 4.093 11 H 0.110 0.890 12 C -0.113 4.113 13 C 0.038 3.962 14 O -0.346 6.346 15 C 0.004 3.996 16 C 0.434 3.566 17 F -0.176 7.176 18 F -0.188 7.188 19 F -0.183 7.183 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.121 4.121 23 C -0.071 4.071 24 O -0.555 6.555 25 Si 0.779 3.221 26 C -0.113 4.113 27 C -0.167 4.167 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.105 0.895 46 H 0.395 0.605 47 H -0.300 1.300 48 H -0.283 1.283 49 H 0.153 0.847 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -0.968 6.071 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.018 4.018 4 C -0.023 4.023 5 O -0.234 6.234 6 C 0.044 3.956 7 C 0.038 3.962 8 O -0.233 6.233 9 C -0.005 4.005 10 C -0.111 4.111 11 H 0.128 0.872 12 C -0.150 4.150 13 C -0.005 4.005 14 O -0.264 6.264 15 C -0.091 4.091 16 C 0.379 3.621 17 F -0.157 7.157 18 F -0.170 7.170 19 F -0.165 7.165 20 C -0.169 4.169 21 C -0.169 4.169 22 C -0.122 4.122 23 C -0.181 4.181 24 O -0.363 6.363 25 Si 0.685 3.315 26 C -0.131 4.131 27 C -0.186 4.186 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.157 0.843 45 H 0.122 0.878 46 H 0.245 0.755 47 H -0.228 1.228 48 H -0.209 1.209 49 H 0.170 0.830 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.231 5.740 5.755 hybrid contribution -0.223 0.334 -1.489 1.542 sum -0.573 0.102 4.250 4.290 Atomic orbital electron populations 1.22889 0.79551 1.03635 1.00890 1.87916 1.21361 1.28529 1.95636 1.22742 0.91285 0.85268 1.02537 1.23151 0.94226 0.99283 0.85611 1.86211 1.19283 1.77468 1.40468 1.18554 0.83772 0.99832 0.93459 1.18482 0.89221 0.99830 0.88620 1.86109 1.34649 1.75758 1.26806 1.22801 0.95855 0.98263 0.83567 1.22059 0.99047 0.96694 0.93350 0.87185 1.23353 0.97056 1.00687 0.93944 1.24140 0.88794 1.00907 0.86656 1.88080 1.12478 1.51410 1.74445 1.23281 0.89758 0.97995 0.98055 1.21478 0.75145 0.73369 0.92088 1.93174 1.31506 1.94334 1.96701 1.93187 1.92760 1.42621 1.88388 1.93181 1.78893 1.62249 1.82145 1.23619 1.05100 0.93717 0.94481 1.20970 0.90247 1.04221 1.01497 1.20142 0.96201 1.01126 0.94696 1.25165 0.94235 0.87302 1.11376 1.86452 1.84686 1.16687 1.48480 0.93656 0.75831 0.80004 0.82029 1.20953 0.95128 0.99827 0.97146 1.21306 0.93275 1.04492 0.99481 0.89162 0.92513 0.93609 0.88421 0.92433 0.90220 0.88126 0.90736 0.90572 0.89593 0.85754 0.87102 0.91081 0.93547 0.85703 0.87500 0.84267 0.87764 0.75521 1.22816 1.20940 0.83017 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 113.37 1.25 1.23 16 2 O -0.41 -2.16 10.67 -144.35 -1.54 -3.70 16 3 C 0.06 -0.03 6.32 71.98 0.45 0.42 16 4 C 0.05 -0.03 5.12 71.98 0.37 0.34 16 5 O -0.32 -2.42 9.89 -73.38 -0.73 -3.14 16 6 C 0.09 0.55 6.70 22.57 0.15 0.70 16 7 C 0.08 0.60 6.70 22.57 0.15 0.75 16 8 O -0.32 -2.56 9.92 -79.65 -0.79 -3.35 16 9 C 0.07 0.13 4.33 71.98 0.31 0.44 16 10 C -0.09 0.09 4.21 -10.17 -0.04 0.05 16 11 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 12 C -0.11 -0.04 6.90 31.22 0.22 0.18 16 13 C 0.04 0.03 0.84 -10.27 -0.01 0.02 16 14 O -0.35 -0.83 8.37 -148.98 -1.25 -2.08 16 15 C 0.00 -0.01 10.33 113.37 1.17 1.16 16 16 C 0.43 1.66 2.52 71.98 0.18 1.84 16 17 F -0.18 -0.66 15.81 44.97 0.71 0.06 16 18 F -0.19 -1.48 17.11 44.97 0.77 -0.71 16 19 F -0.18 -0.72 15.34 44.97 0.69 -0.03 16 20 C -0.13 0.48 6.51 31.12 0.20 0.68 16 21 C -0.15 -0.59 8.59 22.35 0.19 -0.40 16 22 C -0.12 -0.13 5.39 -19.86 -0.11 -0.24 16 23 C -0.07 0.04 2.82 71.24 0.20 0.24 16 24 O -0.56 0.12 12.76 -148.98 -1.90 -1.78 16 25 Si 0.78 -2.15 29.78 68.60 2.04 -0.11 16 26 C -0.11 0.11 8.66 22.27 0.19 0.31 16 27 C -0.17 -0.05 9.04 22.35 0.20 0.15 16 28 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.08 -0.19 7.66 -2.39 -0.02 -0.21 16 34 H 0.10 -0.59 7.67 -2.38 -0.02 -0.60 16 35 H 0.07 -0.03 7.65 -2.38 -0.02 -0.05 16 36 H 0.08 0.21 5.66 -2.39 -0.01 0.20 16 37 H 0.09 0.25 8.10 -2.39 -0.02 0.23 16 38 H 0.12 -0.22 7.02 -2.39 -0.02 -0.23 16 39 H 0.11 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.07 -0.35 6.60 -2.39 -0.02 -0.37 16 41 H 0.05 0.00 6.56 -2.39 -0.02 -0.02 16 42 H 0.12 -0.74 8.03 -2.39 -0.02 -0.76 16 43 H 0.11 -0.64 6.64 -2.39 -0.02 -0.65 16 44 H 0.14 0.36 6.30 -2.91 -0.02 0.35 16 45 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 46 H 0.39 -3.13 8.70 -74.05 -0.64 -3.78 16 47 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 48 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 49 H 0.15 -0.92 4.87 -2.91 -0.01 -0.94 16 50 H 0.16 -0.89 6.30 -2.91 -0.02 -0.91 16 Total: 0.00 -20.37 412.58 3.49 -16.88 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: 0.39 Total: -9.90 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.09 Total: 7.87 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -6.20 Total: -14.06 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 2.17 Total: -0.68 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.04 Total: -0.11 kcal Total: -20.37 3.49 -16.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_17321602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -256.594 kcal (2) G-P(sol) polarization free energy of solvation -20.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds