Wall clock time and date at job start Mon Mar 8 2021 08:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99854 * 2 1 4 4 C 1.52999 * 109.47169 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46766 * 65.00237 * 4 3 2 6 6 C 1.36000 * 116.99728 * 179.97438 * 5 4 3 7 7 C 1.38524 * 120.07258 * 0.02610 * 6 5 4 8 8 C 1.38277 * 119.99944 * 179.97438 * 7 6 5 9 9 C 1.38210 * 120.14810 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.92715 * 180.02562 * 9 8 7 11 11 O 1.42906 * 109.46710 * 120.00265 * 10 9 8 12 12 Si 1.86295 * 109.47223 * 0.02562 * 10 9 8 13 13 H 1.48497 * 109.47483 * 59.99573 * 12 10 9 14 14 H 1.48501 * 109.46974 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46682 * 299.99318 * 12 10 9 16 16 C 1.38292 * 120.14334 * 359.76849 * 9 8 7 17 17 C 1.38517 * 120.00018 * 0.50805 * 16 9 8 18 18 O 1.35987 * 120.07682 * 179.74491 * 17 16 9 19 19 C 1.42905 * 116.99717 * 359.72472 * 18 17 16 20 20 C 1.50701 * 109.47046 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00243 * 89.99998 * 20 19 18 22 22 C 1.38234 * 120.00240 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 Si 1.86796 * 120.00338 * 179.72477 * 23 22 21 25 25 C 1.86298 * 109.47345 * 89.99399 * 24 23 22 26 26 C 1.86292 * 109.47215 * 209.99657 * 24 23 22 27 27 C 1.86304 * 109.46695 * 329.99459 * 24 23 22 28 28 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 29 29 C 1.38234 * 120.00005 * 0.52168 * 28 23 22 30 30 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47420 * 299.99854 * 1 2 3 32 32 H 1.09003 * 109.47504 * 59.99783 * 1 2 3 33 33 H 1.08998 * 109.46800 * 59.99971 * 3 2 1 34 34 H 1.09002 * 109.46929 * 300.00528 * 3 2 1 35 35 H 1.08999 * 109.47134 * 305.00243 * 4 3 2 36 36 H 1.08995 * 109.46857 * 184.99859 * 4 3 2 37 37 H 1.08004 * 120.00018 * 359.97438 * 7 6 5 38 38 H 1.07999 * 119.93037 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.47454 * 239.99554 * 10 9 8 40 40 H 0.96697 * 114.00254 * 299.99333 * 11 10 9 41 41 H 1.08002 * 119.99949 * 180.25228 * 16 9 8 42 42 H 1.08996 * 109.47095 * 59.99943 * 19 18 17 43 43 H 1.08999 * 109.47350 * 299.99879 * 19 18 17 44 44 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 45 45 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.47461 * 60.00145 * 25 24 23 47 47 H 1.08995 * 109.47041 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.46941 * 300.00096 * 25 24 23 49 49 H 1.08997 * 109.47556 * 59.99827 * 26 24 23 50 50 H 1.09003 * 109.47107 * 179.97438 * 26 24 23 51 51 H 1.09001 * 109.47298 * 299.99936 * 26 24 23 52 52 H 1.09004 * 109.47045 * 60.00345 * 27 24 23 53 53 H 1.09003 * 109.47110 * 180.02562 * 27 24 23 54 54 H 1.09000 * 109.47158 * 300.00133 * 27 24 23 55 55 H 1.07999 * 119.99927 * 180.24100 * 28 23 22 56 56 H 1.08001 * 120.00310 * 179.72165 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9647 0.5799 -1.2220 6 6 5.3028 0.3989 -1.3844 7 6 6.1824 0.7943 -0.3900 8 6 7.5426 0.6091 -0.5564 9 6 8.0278 0.0293 -1.7134 10 6 9.5110 -0.1707 -1.8892 11 8 9.7873 -1.5627 -2.0572 12 14 10.4059 0.4622 -0.3829 13 1 9.9448 -0.2826 0.8162 14 1 11.8676 0.2656 -0.5565 15 1 10.1189 1.9087 -0.2080 16 6 7.1547 -0.3725 -2.7077 17 6 5.7914 -0.1847 -2.5498 18 8 4.9319 -0.5745 -3.5288 19 6 5.5043 -1.1659 -4.6970 20 6 4.4077 -1.5308 -5.6642 21 6 3.9906 -0.6164 -6.6133 22 6 2.9843 -0.9508 -7.5001 23 6 2.3914 -2.1978 -7.4343 24 14 1.0263 -2.6471 -8.6276 25 6 1.7644 -3.4227 -10.1521 26 6 -0.1351 -3.8565 -7.8158 27 6 0.0880 -1.1100 -9.1050 28 6 2.8121 -3.1141 -6.4886 29 6 3.8184 -2.7797 -5.6018 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8465 -0.8900 35 1 3.8514 0.5683 0.8409 36 1 3.9784 2.1766 0.0889 37 1 5.8059 1.2472 0.5153 38 1 8.2273 0.9174 0.2198 39 1 9.8495 0.3756 -2.7696 40 1 9.5121 -2.1113 -1.3099 41 1 7.5361 -0.8291 -3.6091 42 1 6.0557 -2.0634 -4.4169 43 1 6.1827 -0.4551 -5.1689 44 1 4.4504 0.3597 -6.6614 45 1 2.6583 -0.2362 -8.2413 46 1 2.3134 -4.3220 -9.8729 47 1 0.9679 -3.6844 -10.8486 48 1 2.4439 -2.7150 -10.6271 49 1 -0.5670 -3.4028 -6.9238 50 1 -0.9319 -4.1183 -8.5120 51 1 0.4138 -4.7558 -7.5364 52 1 0.7676 -0.4023 -9.5800 53 1 -0.7088 -1.3722 -9.8010 54 1 -0.3438 -0.6562 -8.2130 55 1 2.3515 -4.0898 -6.4397 56 1 4.1440 -3.4939 -4.8601 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16901878_9403676.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:57:07 Heat of formation + Delta-G solvation = -136.029330 kcal Electronic energy + Delta-G solvation = -33770.771347 eV Core-core repulsion = 29348.545147 eV Total energy + Delta-G solvation = -4422.226200 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 390.187 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.78212 -40.35031 -39.60284 -38.85057 -38.51812 -36.93761 -33.26422 -32.20100 -31.89855 -31.45205 -30.67611 -29.44344 -28.30258 -28.27270 -27.67950 -27.25425 -26.22243 -24.64063 -23.50090 -23.05513 -22.51860 -21.81514 -19.77825 -18.60934 -18.39235 -17.88768 -17.60726 -17.15896 -17.13034 -16.71889 -16.27464 -16.22323 -16.05679 -15.93994 -15.84741 -15.69772 -15.40226 -15.05123 -14.64271 -14.35414 -14.09446 -14.07180 -14.03370 -13.88644 -13.75042 -13.63602 -13.57829 -13.32779 -13.14435 -13.12405 -13.10926 -12.97323 -12.89495 -12.52224 -12.43406 -12.30056 -12.19972 -12.17090 -12.02940 -11.84990 -11.81699 -11.58646 -10.92705 -10.78937 -10.76538 -10.72717 -10.43222 -9.82513 -9.79721 -9.69682 -8.90236 0.15162 0.15834 0.24352 0.50524 1.18487 1.48328 1.53536 1.82649 1.92330 1.99363 2.02013 2.12093 2.30052 2.54115 2.66149 2.75100 3.00703 3.47292 3.62960 3.65419 3.78997 3.79684 3.88573 3.96142 4.04807 4.07854 4.17021 4.21105 4.21777 4.28171 4.34583 4.41333 4.45372 4.49716 4.51000 4.59170 4.61046 4.69000 4.69544 4.81000 4.84431 4.84561 4.88170 4.88934 4.89101 4.90714 4.97866 4.98849 5.10379 5.14234 5.32603 5.38883 5.55070 5.57706 5.58654 5.58901 5.67731 5.69708 6.00741 6.11081 6.14405 6.52934 6.69164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.051 3.949 5 O -0.322 6.322 6 C 0.089 3.911 7 C -0.167 4.167 8 C -0.124 4.124 9 C -0.119 4.119 10 C -0.079 4.079 11 O -0.553 6.553 12 Si 0.986 3.014 13 H -0.250 1.250 14 H -0.276 1.276 15 H -0.253 1.253 16 C -0.148 4.148 17 C 0.082 3.918 18 O -0.318 6.318 19 C 0.100 3.900 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.374 4.374 24 Si 1.126 2.874 25 C -0.460 4.460 26 C -0.463 4.463 27 C -0.462 4.462 28 C -0.103 4.103 29 C -0.123 4.123 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.389 0.611 41 H 0.146 0.854 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.141 0.859 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.076 0.924 54 H 0.066 0.934 55 H 0.140 0.860 56 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 1.901 1.019 2.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.018 4.018 4 C -0.023 4.023 5 O -0.236 6.236 6 C 0.043 3.957 7 C -0.185 4.185 8 C -0.142 4.142 9 C -0.119 4.119 10 C -0.189 4.189 11 O -0.360 6.360 12 Si 0.810 3.190 13 H -0.174 1.174 14 H -0.202 1.202 15 H -0.177 1.177 16 C -0.166 4.166 17 C 0.036 3.964 18 O -0.233 6.233 19 C 0.025 3.975 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.413 4.413 24 Si 1.313 2.687 25 C -0.567 4.567 26 C -0.570 4.570 27 C -0.569 4.569 28 C -0.121 4.121 29 C -0.141 4.141 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.238 0.762 41 H 0.164 0.836 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.144 0.856 45 H 0.159 0.841 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.091 0.909 52 H 0.092 0.908 53 H 0.095 0.905 54 H 0.085 0.915 55 H 0.158 0.842 56 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.068 2.232 1.102 2.709 hybrid contribution -0.256 -0.043 0.388 0.467 sum -1.325 2.189 1.491 2.961 Atomic orbital electron populations 1.22895 0.79487 1.03625 1.00951 1.87922 1.21460 1.28609 1.95645 1.22750 0.91209 0.85248 1.02597 1.23161 0.94342 0.99303 0.85500 1.86229 1.19362 1.77516 1.40499 1.18562 0.83715 0.99916 0.93476 1.21259 0.93265 1.04584 0.99399 1.20971 0.95249 1.00412 0.97554 1.20176 0.96682 1.00751 0.94315 1.25060 0.93413 0.87125 1.13254 1.86475 1.84648 1.16897 1.47982 0.85171 0.77938 0.80127 0.75792 1.17358 1.20154 1.17710 1.21003 0.89925 1.03985 1.01719 1.18561 0.89430 0.99784 0.88604 1.86246 1.34756 1.75615 1.26711 1.21722 0.94214 0.98287 0.83228 1.19629 0.98690 0.95259 0.96695 1.21366 0.97968 0.98920 0.95793 1.21395 0.95089 0.97325 0.98257 1.28132 1.10264 0.96037 1.06891 0.77198 0.62412 0.65786 0.63286 1.26247 1.07312 1.07381 1.15726 1.26281 1.11245 1.11637 1.07805 1.26269 1.09005 1.15949 1.05656 1.21387 0.95786 1.00337 0.94582 1.21364 0.97073 0.96319 0.99376 0.89237 0.92285 0.93656 0.88214 0.92439 0.90487 0.87910 0.82166 0.84029 0.85803 0.76230 0.83628 0.90411 0.90201 0.85595 0.84108 0.91359 0.90508 0.91314 0.91519 0.90463 0.90930 0.90849 0.90466 0.91491 0.84242 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 11.01 113.37 1.25 1.28 16 2 O -0.42 -3.11 10.67 -144.34 -1.54 -4.65 16 3 C 0.06 0.08 6.32 71.98 0.45 0.54 16 4 C 0.05 0.08 5.12 71.98 0.37 0.45 16 5 O -0.32 -3.30 9.89 -73.51 -0.73 -4.03 16 6 C 0.09 0.76 6.70 22.57 0.15 0.91 16 7 C -0.17 -0.45 9.04 22.35 0.20 -0.25 16 8 C -0.12 -0.18 8.66 22.27 0.19 0.02 16 9 C -0.12 -0.28 5.39 -19.86 -0.11 -0.39 16 10 C -0.08 0.04 2.82 71.24 0.20 0.24 16 11 O -0.55 -0.48 12.76 -148.98 -1.90 -2.38 16 12 Si 0.99 -1.62 25.06 68.60 1.72 0.10 16 13 H -0.25 0.46 7.11 99.48 0.71 1.17 16 14 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 15 H -0.25 0.31 7.11 99.48 0.71 1.01 16 16 C -0.15 -0.75 8.60 22.35 0.19 -0.56 16 17 C 0.08 0.77 6.70 22.57 0.15 0.92 16 18 O -0.32 -3.77 9.91 -79.56 -0.79 -4.56 16 19 C 0.10 0.60 4.87 71.24 0.35 0.95 16 20 C -0.10 -0.75 5.51 -19.86 -0.11 -0.86 16 21 C -0.12 -0.73 9.70 22.27 0.22 -0.51 16 22 C -0.10 -0.34 9.29 22.27 0.21 -0.13 16 23 C -0.37 -0.71 4.59 22.27 0.10 -0.61 16 24 Si 1.13 -4.73 12.32 68.60 0.85 -3.88 16 25 C -0.46 1.27 8.65 113.37 0.98 2.26 16 26 C -0.46 1.27 8.54 113.37 0.97 2.24 16 27 C -0.46 1.39 8.53 113.37 0.97 2.36 16 28 C -0.10 -0.38 9.29 22.27 0.21 -0.18 16 29 C -0.12 -0.80 9.70 22.27 0.22 -0.59 16 30 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 34 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.08 0.01 7.66 -2.39 -0.02 -0.01 16 36 H 0.10 -0.42 7.66 -2.39 -0.02 -0.44 16 37 H 0.16 -0.48 6.30 -2.91 -0.02 -0.49 16 38 H 0.14 -0.37 4.86 -2.91 -0.01 -0.39 16 39 H 0.12 -0.27 7.96 -2.39 -0.02 -0.29 16 40 H 0.39 -2.01 8.70 -74.06 -0.64 -2.65 16 41 H 0.15 0.42 6.30 -2.91 -0.02 0.41 16 42 H 0.08 0.29 7.60 -2.39 -0.02 0.27 16 43 H 0.08 0.24 7.62 -2.39 -0.02 0.22 16 44 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.14 -0.21 7.43 -2.91 -0.02 -0.23 16 46 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 47 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 48 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 49 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 50 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 51 H 0.07 -0.22 7.69 -2.39 -0.02 -0.24 16 52 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 53 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 54 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 55 H 0.14 -0.11 7.44 -2.91 -0.02 -0.13 16 56 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 Total: 0.00 -20.11 458.43 5.74 -14.37 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: 0.98 Total: -3.04 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 7.16 Total: 8.08 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -4.96 Total: -15.61 kcal Atomic # 14 Polarization: -6.35 SS G_CDS: 2.56 Total: -3.78 kcal Total: -20.11 5.74 -14.37 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16901878_9403676.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.663 kcal (2) G-P(sol) polarization free energy of solvation -20.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds