Wall clock time and date at job start Mon Mar 8 2021 10:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 C 1.50705 * 109.46899 * 119.99529 * 2 1 3 5 5 C 1.38715 * 119.99327 * 74.99783 * 4 2 1 6 6 O 1.35944 * 119.99211 * 359.97438 * 5 4 2 7 7 C 1.42898 * 117.00313 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47091 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47154 * 305.00352 * 8 7 6 10 10 C 1.52998 * 109.47135 * 65.00646 * 8 7 6 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46892 * 299.99974 * 11 10 8 13 13 H 1.08998 * 109.47142 * 299.99532 * 12 11 10 14 14 O 1.42901 * 109.47067 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47041 * 59.99761 * 12 11 10 16 16 C 1.52997 * 109.47473 * 299.99883 * 15 12 11 17 17 C 1.38765 * 120.02054 * 180.02562 * 5 4 2 18 18 C 1.38044 * 120.01439 * 359.97438 * 17 5 4 19 19 C 1.38856 * 119.98810 * 359.97438 * 18 17 5 20 20 N 1.40290 * 120.01168 * 180.02562 * 19 18 17 21 21 C 1.35194 * 126.05289 * 359.69402 * 20 19 18 22 22 C 1.35343 * 107.71280 * 179.83546 * 21 20 19 23 23 C 1.39894 * 107.93489 * 0.42866 * 22 21 20 24 24 N 1.30897 * 108.23698 * 359.73146 * 23 22 21 25 25 C 1.38094 * 119.99559 * 254.98215 * 4 2 1 26 26 H 0.96697 * 113.99902 * 300.00637 * 1 2 3 27 27 H 1.08992 * 109.47371 * 239.99419 * 2 1 3 28 28 H 1.48503 * 110.00162 * 178.67939 * 3 2 1 29 29 H 1.48507 * 109.99738 * 299.99415 * 3 2 1 30 30 H 1.09002 * 109.47140 * 300.00796 * 7 6 5 31 31 H 1.09004 * 109.46446 * 60.00271 * 7 6 5 32 32 H 1.09001 * 109.46820 * 300.00044 * 10 8 7 33 33 H 1.08997 * 109.47348 * 59.99263 * 10 8 7 34 34 H 1.08996 * 109.47151 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.46845 * 59.99688 * 11 10 8 36 36 H 0.96701 * 114.00008 * 59.99330 * 14 12 11 37 37 H 1.09001 * 109.46820 * 179.97438 * 15 12 11 38 38 H 1.09004 * 109.46940 * 60.00479 * 15 12 11 39 39 H 1.08998 * 109.46845 * 300.00312 * 16 15 12 40 40 H 1.08996 * 109.47151 * 180.02562 * 16 15 12 41 41 H 1.08004 * 119.99596 * 179.72834 * 17 5 4 42 42 H 1.08002 * 120.00545 * 180.02562 * 18 17 5 43 43 H 1.07996 * 126.13824 * 0.02562 * 21 20 19 44 44 H 1.08004 * 126.02896 * 180.18087 * 22 21 20 45 45 H 1.07995 * 125.88170 * 179.71661 * 23 22 21 46 46 H 1.07997 * 120.00193 * 359.97072 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.8692 -2.0940 1.3064 6 8 1.3548 -2.8090 0.2709 7 6 1.3210 -4.2301 0.4171 8 6 0.7131 -4.8576 -0.8389 9 1 -0.2656 -4.4167 -1.0281 10 6 1.6304 -4.5955 -2.0351 11 6 1.0229 -5.2236 -3.2910 12 6 0.8721 -6.7322 -3.0848 13 1 1.8509 -7.1727 -2.8955 14 8 0.3041 -7.3187 -4.2576 15 6 -0.0452 -6.9942 -1.8887 16 6 0.5623 -6.3662 -0.6328 17 6 2.3310 -2.7486 2.4395 18 6 2.8530 -2.0232 3.4915 19 6 2.9164 -0.6381 3.4157 20 7 3.4473 0.0996 4.4843 21 6 3.9243 -0.4087 5.6427 22 6 4.3453 0.6277 6.4046 23 6 4.1094 1.8090 5.6934 24 7 3.5713 1.4938 4.5425 25 6 2.4536 0.0163 2.2823 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 3.5347 1.7702 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.3349 -4.6051 0.5570 31 1 0.7140 -4.4917 1.2838 32 1 1.7382 -3.5208 -2.1816 33 1 2.6092 -5.0363 -1.8459 34 1 1.6762 -5.0365 -4.1432 35 1 0.0440 -4.7831 -3.4803 36 1 0.8333 -7.1914 -5.0569 37 1 -0.1530 -8.0689 -1.7421 38 1 -1.0241 -6.5538 -2.0781 39 1 1.5411 -6.8067 -0.4434 40 1 -0.0910 -6.5533 0.2194 41 1 2.2785 -3.8257 2.4999 42 1 3.2128 -2.5328 4.3731 43 1 3.9653 -1.4541 5.9105 44 1 4.7822 0.5556 7.3897 45 1 4.3325 2.8089 6.0351 46 1 2.5025 1.0935 2.2228 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16951042_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:12:35 Heat of formation + Delta-G solvation = -15.092304 kcal Electronic energy + Delta-G solvation = -28286.078445 eV Core-core repulsion = 24337.133560 eV Total energy + Delta-G solvation = -3948.944885 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50311 -41.43028 -40.15496 -38.76123 -37.69901 -36.72225 -34.12735 -32.84751 -31.91703 -31.84406 -31.15136 -29.42898 -26.93059 -26.75983 -24.28873 -23.76818 -23.58440 -22.31040 -21.52315 -21.36229 -20.83641 -19.53553 -18.82580 -18.23019 -17.91440 -17.22216 -17.00106 -16.52158 -16.21440 -16.10536 -15.89023 -15.54947 -15.49667 -15.37759 -15.08596 -14.78809 -14.61064 -14.29583 -14.20030 -13.96941 -13.71924 -13.55688 -13.46000 -13.28231 -13.21123 -12.69083 -12.64955 -12.31267 -12.19666 -12.08221 -11.99579 -11.71510 -11.61636 -11.56192 -11.12783 -10.88803 -10.74377 -10.48667 -10.23882 -9.98836 -8.75116 -5.09320 -0.19942 -0.01311 1.15078 1.19375 1.40901 1.52943 1.83017 1.87504 2.09478 2.51206 3.20447 3.28323 3.48030 3.62074 3.64371 3.67573 3.72019 3.83174 3.90768 3.98884 4.05084 4.07375 4.13414 4.24568 4.27619 4.31864 4.34696 4.36451 4.45761 4.51108 4.54465 4.59477 4.71133 4.77012 4.79492 4.86365 4.95048 5.03856 5.04332 5.07128 5.08396 5.12055 5.12602 5.16215 5.28406 5.37846 5.42196 5.70924 6.13656 6.33985 6.64698 6.71171 6.82036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.049 4.049 3 Si 0.749 3.251 4 C -0.142 4.142 5 C 0.139 3.861 6 O -0.314 6.314 7 C 0.056 3.944 8 C -0.083 4.083 9 H 0.070 0.930 10 C -0.108 4.108 11 C -0.148 4.148 12 C 0.102 3.898 13 H 0.065 0.935 14 O -0.591 6.591 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.177 4.177 18 C -0.086 4.086 19 C 0.108 3.892 20 N -0.333 5.333 21 C 0.047 3.953 22 C -0.269 4.269 23 C 0.050 3.950 24 N -0.334 5.334 25 C -0.087 4.087 26 H 0.391 0.609 27 H 0.104 0.896 28 H -0.293 1.293 29 H -0.286 1.286 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.167 0.833 42 H 0.165 0.835 43 H 0.209 0.791 44 H 0.176 0.824 45 H 0.212 0.788 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -3.453 5.588 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.160 4.160 3 Si 0.655 3.345 4 C -0.143 4.143 5 C 0.092 3.908 6 O -0.227 6.227 7 C -0.018 4.018 8 C -0.102 4.102 9 H 0.088 0.912 10 C -0.146 4.146 11 C -0.186 4.186 12 C 0.043 3.957 13 H 0.083 0.917 14 O -0.399 6.399 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.196 4.196 18 C -0.106 4.106 19 C 0.016 3.984 20 N -0.109 5.109 21 C -0.095 4.095 22 C -0.297 4.297 23 C -0.136 4.136 24 N -0.154 5.154 25 C -0.106 4.106 26 H 0.241 0.759 27 H 0.122 0.878 28 H -0.220 1.220 29 H -0.213 1.213 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.242 0.758 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.184 0.816 42 H 0.182 0.818 43 H 0.226 0.774 44 H 0.193 0.807 45 H 0.229 0.771 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.647 -2.883 3.701 4.972 hybrid contribution 0.931 -0.482 0.083 1.052 sum 2.577 -3.365 3.784 5.682 Atomic orbital electron populations 1.86505 1.16869 1.81958 1.50086 1.24782 0.85427 1.09143 0.96624 0.93987 0.78412 0.76781 0.85323 1.19523 1.05341 0.91707 0.97760 1.18925 0.93372 0.90653 0.87804 1.86153 1.77017 1.20845 1.38712 1.23129 1.02228 0.77022 0.99449 1.21161 0.99662 0.95931 0.93421 0.91184 1.21472 0.98865 1.00620 0.93614 1.22225 1.01474 0.96148 0.98759 1.21920 0.96488 0.91657 0.85611 0.91704 1.86483 1.53807 1.79656 1.20003 1.21477 0.98844 1.01525 0.93348 1.21427 1.02680 0.92408 0.97387 1.21384 1.03525 1.01955 0.92783 1.20944 0.99125 0.90027 1.00527 1.17557 1.02394 0.90752 0.87732 1.45972 1.47160 1.04826 1.12942 1.23260 0.98077 1.02362 0.85849 1.22005 1.12521 0.90905 1.04317 1.24638 0.96140 1.01884 0.90984 1.77404 1.25023 0.89931 1.23042 1.20522 0.98524 1.00053 0.91488 0.75919 0.87839 1.22008 1.21303 0.90189 0.90164 0.92336 0.90811 0.90998 0.92484 0.75791 0.90975 0.92314 0.89927 0.89661 0.81553 0.81780 0.77403 0.80680 0.77111 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.32 12.88 -148.98 -1.92 -4.24 16 2 C -0.05 -0.20 2.37 71.24 0.17 -0.03 16 3 Si 0.75 2.62 29.92 68.60 2.05 4.67 16 4 C -0.14 -0.51 5.27 -19.78 -0.10 -0.61 16 5 C 0.14 0.30 6.66 22.51 0.15 0.45 16 6 O -0.31 -0.82 9.00 -92.92 -0.84 -1.65 16 7 C 0.06 -0.21 4.12 71.98 0.30 0.08 16 8 C -0.08 0.21 2.43 -10.79 -0.03 0.19 16 9 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 10 C -0.11 0.14 5.10 30.59 0.16 0.29 16 11 C -0.15 0.07 5.55 30.59 0.17 0.24 16 12 C 0.10 -0.03 3.47 30.59 0.11 0.08 16 13 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 14 O -0.59 -1.66 13.32 -148.98 -1.98 -3.64 16 15 C -0.11 0.08 5.57 30.59 0.17 0.26 16 16 C -0.10 0.51 5.20 30.59 0.16 0.67 16 17 C -0.18 0.47 9.03 22.35 0.20 0.67 16 18 C -0.09 0.21 9.45 22.37 0.21 0.42 16 19 C 0.11 0.32 6.69 38.07 0.25 0.57 16 20 N -0.33 -1.40 3.80 -187.69 -0.71 -2.12 16 21 C 0.05 -0.05 10.80 83.51 0.90 0.85 16 22 C -0.27 0.31 10.80 22.00 0.24 0.55 16 23 C 0.05 0.08 12.03 85.23 1.02 1.11 16 24 N -0.33 -2.31 11.87 -56.98 -0.68 -2.98 16 25 C -0.09 -0.34 8.27 22.37 0.18 -0.15 16 26 H 0.39 -1.40 8.70 -74.06 -0.64 -2.05 16 27 H 0.10 0.64 7.82 -2.39 -0.02 0.62 16 28 H -0.29 -2.80 7.11 99.48 0.71 -2.09 16 29 H -0.29 -2.63 7.11 99.48 0.71 -1.93 16 30 H 0.08 -0.55 7.66 -2.39 -0.02 -0.57 16 31 H 0.08 -0.52 7.65 -2.39 -0.02 -0.54 16 32 H 0.06 0.12 7.82 -2.39 -0.02 0.10 16 33 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.39 -1.90 9.08 -74.06 -0.67 -2.57 16 37 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.17 -1.39 6.29 -2.91 -0.02 -1.41 16 42 H 0.16 -1.46 6.74 -2.91 -0.02 -1.48 16 43 H 0.21 -1.94 7.04 -2.91 -0.02 -1.96 16 44 H 0.18 -1.11 8.06 -2.91 -0.02 -1.13 16 45 H 0.21 -1.00 8.06 -2.91 -0.02 -1.02 16 46 H 0.15 0.53 4.76 -2.91 -0.01 0.52 16 Total: 0.00 -21.34 370.76 -0.08 -21.43 By element: Atomic # 1 Polarization: -16.83 SS G_CDS: -0.27 Total: -17.10 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 4.26 Total: 5.64 kcal Atomic # 7 Polarization: -3.71 SS G_CDS: -1.39 Total: -5.10 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -4.74 Total: -9.53 kcal Atomic # 14 Polarization: 2.62 SS G_CDS: 2.05 Total: 4.67 kcal Total: -21.34 -0.08 -21.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16951042_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.333 kcal (2) G-P(sol) polarization free energy of solvation -21.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds