Wall clock time and date at job start Mon Mar 8 2021 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 C 1.52999 * 109.47385 * 239.99887 * 2 1 3 5 5 C 1.50703 * 109.47099 * 119.99685 * 2 1 3 6 6 C 1.38120 * 119.97025 * 60.00386 * 5 2 1 7 7 C 1.38751 * 119.94437 * 180.02562 * 6 5 2 8 8 O 1.35903 * 120.05355 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00184 * 359.97438 * 8 7 6 10 10 C 1.53006 * 109.46881 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.46955 * 305.00145 * 10 9 8 12 12 C 1.52997 * 109.47127 * 65.00134 * 10 9 8 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46972 * 299.99541 * 13 12 10 15 15 H 1.08996 * 109.47407 * 300.00487 * 14 13 12 16 16 O 1.42905 * 109.47086 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47128 * 60.00146 * 14 13 12 18 18 C 1.52999 * 109.46626 * 184.99673 * 10 9 8 19 19 C 1.38707 * 119.89088 * 0.26755 * 7 6 5 20 20 C 1.50694 * 120.03170 * 179.73047 * 19 7 6 21 21 O 1.42899 * 109.47343 * 75.00075 * 20 19 7 22 22 Si 1.86308 * 109.47257 * 194.99886 * 20 19 7 23 23 C 1.38172 * 119.94194 * 359.49792 * 19 7 6 24 24 C 1.38245 * 120.05332 * 0.48636 * 23 19 7 25 25 H 1.09004 * 109.46970 * 300.00074 * 1 2 3 26 26 H 1.09003 * 109.47284 * 59.99877 * 1 2 3 27 27 H 1.08996 * 109.47146 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47343 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47078 * 300.00249 * 3 2 1 30 30 H 1.09004 * 109.47196 * 60.00064 * 3 2 1 31 31 H 1.08996 * 109.47194 * 300.00235 * 4 2 1 32 32 H 1.09003 * 109.46717 * 59.99888 * 4 2 1 33 33 H 1.08995 * 109.47254 * 179.97438 * 4 2 1 34 34 H 1.08007 * 120.02789 * 0.02562 * 6 5 2 35 35 H 1.08992 * 109.47198 * 60.00388 * 9 8 7 36 36 H 1.08997 * 109.46749 * 300.00150 * 9 8 7 37 37 H 1.09001 * 109.47289 * 299.99953 * 12 10 9 38 38 H 1.09004 * 109.47261 * 59.99697 * 12 10 9 39 39 H 1.08996 * 109.47134 * 180.02562 * 13 12 10 40 40 H 1.08992 * 109.47534 * 59.99520 * 13 12 10 41 41 H 0.96699 * 113.99523 * 60.00960 * 16 14 13 42 42 H 1.09001 * 109.47600 * 179.97438 * 17 14 13 43 43 H 1.09004 * 109.47006 * 59.99907 * 17 14 13 44 44 H 1.08993 * 109.47839 * 299.99931 * 18 10 9 45 45 H 1.09000 * 109.47160 * 60.00369 * 18 10 9 46 46 H 1.09001 * 109.47090 * 315.00190 * 20 19 7 47 47 H 0.96700 * 114.00235 * 59.99706 * 21 20 19 48 48 H 1.48502 * 109.99804 * 179.97438 * 22 20 19 49 49 H 1.48493 * 110.00020 * 301.32221 * 22 20 19 50 50 H 1.07999 * 119.97561 * 180.22981 * 23 19 7 51 51 H 1.07996 * 119.94727 * 179.74743 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6983 -2.0327 1.4485 7 6 2.1607 -2.6861 2.5819 8 8 1.8339 -3.9873 2.7983 9 6 1.0100 -4.6211 1.8177 10 6 0.7499 -6.0713 2.2304 11 1 1.7007 -6.5788 2.3931 12 6 -0.0684 -6.0948 3.5229 13 6 -0.3280 -7.5449 3.9359 14 6 -1.1041 -8.2596 2.8278 15 1 -2.0551 -7.7524 2.6650 16 8 -1.3461 -9.6143 3.2133 17 6 -0.2858 -8.2361 1.5352 18 6 -0.0265 -6.7854 1.1222 19 6 2.9529 -2.0074 3.4962 20 6 3.4517 -2.7122 4.7312 21 8 4.5122 -3.6018 4.3765 22 14 4.0795 -1.4539 5.9534 23 6 3.2882 -0.6861 3.2711 24 6 2.8265 -0.0375 2.1409 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.0778 -2.5578 0.7373 35 1 1.5152 -4.6028 0.8521 36 1 0.0615 -4.0896 1.7417 37 1 0.4846 -5.5860 4.3124 38 1 -1.0193 -5.5872 3.3602 39 1 -0.9114 -7.5617 4.8564 40 1 0.6229 -8.0522 4.0986 41 1 -1.8609 -9.7057 4.0267 42 1 -0.8385 -8.7457 0.7459 43 1 0.6652 -8.7434 1.6980 44 1 -0.9772 -6.2778 0.9595 45 1 0.5565 -6.7686 0.2013 46 1 2.6364 -3.2795 5.1802 47 1 5.2732 -3.1647 3.9704 48 1 4.5738 -2.1363 7.1763 49 1 5.1700 -0.6524 5.3424 50 1 3.9080 -0.1582 3.9807 51 1 3.0863 0.9966 1.9688 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_16982350_16737256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:12:57 Heat of formation + Delta-G solvation = -116.868177 kcal Electronic energy + Delta-G solvation = -28555.995811 eV Core-core repulsion = 24807.092599 eV Total energy + Delta-G solvation = -3748.903213 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.202 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.66477 -40.27363 -39.17448 -38.30607 -36.86160 -36.33886 -32.19687 -31.92671 -31.81469 -30.84849 -28.19350 -28.13711 -26.73842 -26.53525 -23.83921 -23.42057 -22.96689 -21.94108 -20.96359 -20.40549 -18.82235 -18.24260 -17.92047 -17.13607 -17.08627 -16.79186 -16.35270 -16.00671 -15.79206 -15.50719 -15.24850 -15.14028 -15.06311 -14.76132 -14.60098 -14.58545 -14.11632 -13.70469 -13.56864 -13.43000 -13.23258 -13.13368 -13.03864 -12.92061 -12.72712 -12.58516 -12.51493 -12.30643 -12.16614 -11.98887 -11.81676 -11.75652 -11.70156 -11.55986 -11.46143 -11.41745 -11.11486 -10.74086 -10.51867 -9.80132 -9.12421 -4.94471 0.22144 0.45796 1.30311 1.55516 1.92515 2.17906 2.65817 3.20639 3.42638 3.54384 3.61513 3.66991 3.72289 3.78643 3.86621 4.01825 4.04723 4.08824 4.12744 4.18968 4.28186 4.31006 4.33846 4.35438 4.37947 4.45281 4.48653 4.49562 4.58837 4.69125 4.74807 4.76317 4.79696 4.88114 4.94239 4.95896 5.01087 5.01954 5.02906 5.06168 5.08289 5.12131 5.15114 5.20454 5.29862 5.30376 5.35231 5.40075 5.40870 5.47145 5.66825 5.81136 6.44264 6.51445 6.83765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.027 4.027 6 C -0.209 4.209 7 C 0.142 3.858 8 O -0.318 6.318 9 C 0.062 3.938 10 C -0.083 4.083 11 H 0.066 0.934 12 C -0.106 4.106 13 C -0.147 4.147 14 C 0.102 3.898 15 H 0.066 0.934 16 O -0.591 6.591 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.168 4.168 20 C -0.073 4.073 21 O -0.547 6.547 22 Si 0.771 3.229 23 C -0.084 4.084 24 C -0.160 4.160 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.393 0.607 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.381 0.619 48 H -0.304 1.304 49 H -0.272 1.272 50 H 0.145 0.855 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 4.886 -1.886 6.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.027 4.027 6 C -0.227 4.227 7 C 0.096 3.904 8 O -0.231 6.231 9 C -0.013 4.013 10 C -0.101 4.101 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.185 4.185 14 C 0.044 3.956 15 H 0.084 0.916 16 O -0.399 6.399 17 C -0.151 4.151 18 C -0.140 4.140 19 C -0.169 4.169 20 C -0.181 4.181 21 O -0.355 6.355 22 Si 0.676 3.324 23 C -0.101 4.101 24 C -0.178 4.178 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.243 0.757 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.230 0.770 48 H -0.233 1.233 49 H -0.198 1.198 50 H 0.163 0.837 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.006 4.477 -1.583 5.620 hybrid contribution 0.633 -0.659 -0.297 0.961 sum -2.373 3.818 -1.880 4.872 Atomic orbital electron populations 1.21886 0.93002 1.02167 1.02446 1.19582 0.96183 0.95515 0.91848 1.21985 1.01322 0.94233 1.02728 1.21895 1.00940 1.00241 0.96541 1.19883 0.94589 0.92767 0.95469 1.21202 1.06453 0.96411 0.98667 1.18923 0.94154 0.83532 0.93742 1.86114 1.66434 1.22031 1.48523 1.22979 0.94118 0.93281 0.90877 1.21156 0.99636 0.92915 0.96412 0.91514 1.21451 1.00196 0.95913 0.96778 1.22219 1.01049 0.96204 0.99024 1.21907 0.97636 0.81921 0.94178 0.91579 1.86482 1.77915 1.27135 1.48370 1.21476 1.00095 0.97114 0.96432 1.21434 1.01077 0.93974 0.97468 1.19655 1.03673 0.94991 0.98535 1.25075 0.92836 1.00515 0.99655 1.86603 1.29545 1.36906 1.82445 0.94077 0.85031 0.78482 0.74794 1.21145 0.98462 0.92647 0.97873 1.21293 1.00359 1.01539 0.94642 0.92516 0.91394 0.92539 0.92135 0.91646 0.91655 0.92601 0.91302 0.93026 0.84558 0.91555 0.90748 0.92057 0.90718 0.90616 0.92592 0.75724 0.90961 0.92406 0.89952 0.90153 0.87605 0.77037 1.23262 1.19780 0.83734 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.44 8.29 71.98 0.60 1.04 16 2 C -0.03 0.07 0.85 -52.93 -0.05 0.03 16 3 C -0.15 0.56 7.13 71.98 0.51 1.07 16 4 C -0.14 0.33 8.29 71.98 0.60 0.93 16 5 C -0.03 -0.01 4.76 -19.88 -0.09 -0.11 16 6 C -0.21 -0.38 7.70 22.36 0.17 -0.21 16 7 C 0.14 0.68 6.66 22.50 0.15 0.82 16 8 O -0.32 -1.75 9.00 -92.46 -0.83 -2.59 16 9 C 0.06 -0.01 4.12 71.98 0.30 0.29 16 10 C -0.08 0.02 2.43 -10.79 -0.03 -0.01 16 11 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 12 C -0.11 0.02 5.10 30.59 0.16 0.18 16 13 C -0.15 -0.01 5.55 30.59 0.17 0.16 16 14 C 0.10 0.04 3.47 30.60 0.11 0.15 16 15 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 16 O -0.59 -1.88 13.32 -148.98 -1.98 -3.86 16 17 C -0.11 -0.07 5.57 30.61 0.17 0.10 16 18 C -0.10 0.29 5.21 30.61 0.16 0.45 16 19 C -0.17 -0.60 5.27 -19.77 -0.10 -0.71 16 20 C -0.07 -0.28 2.38 71.23 0.17 -0.11 16 21 O -0.55 -4.00 12.88 -148.98 -1.92 -5.92 16 22 Si 0.77 0.17 30.26 68.60 2.08 2.25 16 23 C -0.08 -0.06 8.66 22.26 0.19 0.13 16 24 C -0.16 -0.01 8.97 22.28 0.20 0.19 16 25 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.06 -0.18 7.39 -2.39 -0.02 -0.20 16 28 H 0.06 -0.22 7.51 -2.39 -0.02 -0.24 16 29 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 -0.28 7.51 -2.39 -0.02 -0.30 16 31 H 0.05 -0.13 7.39 -2.39 -0.02 -0.15 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.14 -0.11 5.34 -2.91 -0.02 -0.13 16 35 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 36 H 0.07 -0.20 7.66 -2.39 -0.02 -0.22 16 37 H 0.06 0.17 7.82 -2.39 -0.02 0.15 16 38 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.39 -1.85 9.08 -74.06 -0.67 -2.52 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.11 0.52 7.83 -2.39 -0.02 0.50 16 47 H 0.38 0.47 8.70 -74.06 -0.64 -0.18 16 48 H -0.30 -2.41 7.11 99.48 0.71 -1.71 16 49 H -0.27 -0.54 6.68 99.48 0.66 0.12 16 50 H 0.15 -0.38 4.87 -2.91 -0.01 -0.39 16 51 H 0.15 -0.49 5.89 -2.91 -0.02 -0.51 16 Total: 0.00 -13.71 388.27 0.31 -13.40 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -0.41 Total: -7.67 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 3.38 Total: 4.39 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -4.74 Total: -12.36 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: 2.08 Total: 2.25 kcal Total: -13.71 0.31 -13.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_16982350_16737256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.472 kcal (2) G-P(sol) polarization free energy of solvation -13.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds