Wall clock time and date at job start Mon Mar 8 2021 08:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47484 * 2 1 4 4 C 1.50702 * 109.46758 * 120.00015 * 2 1 3 5 5 C 1.38228 * 119.96534 * 244.99872 * 4 2 1 6 6 C 1.38384 * 120.10274 * 179.97438 * 5 4 2 7 7 Br 1.89103 * 119.98398 * 179.97438 * 6 5 4 8 8 C 1.38206 * 120.03340 * 0.02562 * 6 5 4 9 9 C 1.38735 * 119.93760 * 359.97438 * 8 6 5 10 10 O 1.35906 * 120.05330 * 179.97438 * 9 8 6 11 11 C 1.42899 * 116.99992 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47052 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47280 * 305.00193 * 12 11 10 14 14 C 1.53002 * 109.46978 * 65.00120 * 12 11 10 15 15 C 1.52997 * 109.46978 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 12 17 17 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 20 20 C 1.52996 * 109.46975 * 184.99658 * 12 11 10 21 21 C 1.38175 * 119.97171 * 65.27439 * 4 2 1 22 22 H 0.96705 * 113.99783 * 300.00479 * 1 2 3 23 23 H 1.08996 * 109.47063 * 239.99264 * 2 1 3 24 24 H 1.48506 * 109.99745 * 299.99776 * 3 2 1 25 25 H 1.48503 * 109.99953 * 61.31546 * 3 2 1 26 26 H 1.07997 * 119.95323 * 359.97438 * 5 4 2 27 27 H 1.08006 * 120.03741 * 179.97438 * 8 6 5 28 28 H 1.08994 * 109.47071 * 59.99544 * 11 10 9 29 29 H 1.09000 * 109.46662 * 299.99954 * 11 10 9 30 30 H 1.09002 * 109.47097 * 299.99801 * 14 12 11 31 31 H 1.09001 * 109.47142 * 59.99766 * 14 12 11 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 12 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 12 34 34 H 0.96698 * 114.00355 * 60.00121 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 16 15 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 12 11 38 38 H 1.09001 * 109.47372 * 300.00372 * 20 12 11 39 39 H 1.07997 * 120.01173 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6386 -0.0117 2.1908 6 6 3.1006 -0.6611 3.3221 7 35 4.0685 0.2980 4.6334 8 6 2.8560 -2.0105 3.4935 9 6 2.1463 -2.7133 2.5307 10 8 1.9048 -4.0404 2.6966 11 6 2.4107 -4.6479 3.8870 12 6 2.0429 -6.1330 3.8976 13 1 0.9649 -6.2412 3.7788 14 6 2.7568 -6.8434 2.7457 15 6 2.3884 -8.3283 2.7559 16 6 2.8197 -8.9517 4.0850 17 1 3.8978 -8.8439 4.2039 18 8 2.4762 -10.3387 4.0943 19 6 2.1059 -8.2413 5.2369 20 6 2.4747 -6.7559 5.2266 21 6 1.6893 -2.0608 1.3950 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5139 -0.8899 24 1 1.5617 2.4678 -1.2086 25 1 1.5880 2.4585 1.2242 26 1 2.8309 1.0427 2.0581 27 1 3.2170 -2.5175 4.3763 28 1 1.9739 -4.1596 4.7580 29 1 3.4951 -4.5416 3.9165 30 1 2.4492 -6.3996 1.7988 31 1 3.8349 -6.7352 2.8645 32 1 1.3103 -8.4361 2.6369 33 1 2.8966 -8.8344 1.9350 34 1 2.8941 -10.8521 3.3895 35 1 2.4134 -8.6850 6.1838 36 1 1.0278 -8.3491 5.1178 37 1 1.9662 -6.2498 6.0473 38 1 3.5528 -6.6477 5.3454 39 1 1.1401 -2.6068 0.6423 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_17850308_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:33:37 Heat of formation + Delta-G solvation = -104.793792 kcal Electronic energy + Delta-G solvation = -21827.680254 eV Core-core repulsion = 18361.633099 eV Total energy + Delta-G solvation = -3466.047155 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57190 -40.28311 -39.15874 -37.58985 -36.71323 -33.61540 -32.44770 -31.93385 -31.42871 -30.22228 -27.44096 -26.35574 -23.99719 -23.48949 -22.95465 -21.86126 -20.98520 -19.22885 -18.24969 -18.03755 -17.52932 -17.28616 -17.19478 -16.45837 -16.24131 -15.66329 -15.56897 -15.26909 -14.92560 -14.82869 -14.47005 -14.21231 -14.05666 -13.75181 -13.42108 -13.32293 -13.12132 -12.85917 -12.76796 -12.32441 -12.19766 -12.17415 -11.78511 -11.75587 -11.65633 -11.51606 -11.36559 -11.19847 -10.78253 -10.73353 -9.97618 -9.40861 -5.01976 -0.13264 0.08577 0.47811 1.17131 1.53732 1.86258 2.00176 2.34644 3.09285 3.25591 3.40006 3.49886 3.59108 3.63577 3.73433 3.86623 3.94436 4.01250 4.04541 4.10172 4.19580 4.22155 4.23598 4.33392 4.36857 4.40762 4.46411 4.53949 4.68409 4.83819 4.90193 4.94649 4.97350 5.01643 5.05983 5.06109 5.13836 5.21132 5.31893 5.38327 6.20165 6.30511 6.66462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.073 4.073 3 Si 0.684 3.316 4 C -0.072 4.072 5 C -0.130 4.130 6 C -0.046 4.046 7 Br -0.039 7.039 8 C -0.178 4.178 9 C 0.142 3.858 10 O -0.305 6.305 11 C 0.060 3.940 12 C -0.087 4.087 13 H 0.086 0.914 14 C -0.111 4.111 15 C -0.152 4.152 16 C 0.103 3.897 17 H 0.055 0.945 18 O -0.569 6.569 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.110 4.110 22 H 0.378 0.622 23 H 0.124 0.876 24 H -0.252 1.252 25 H -0.256 1.256 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.379 0.621 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -0.445 0.045 2.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.183 4.183 3 Si 0.585 3.415 4 C -0.074 4.074 5 C -0.150 4.150 6 C -0.125 4.125 7 Br 0.047 6.953 8 C -0.199 4.199 9 C 0.095 3.905 10 O -0.218 6.218 11 C -0.015 4.015 12 C -0.106 4.106 13 H 0.104 0.896 14 C -0.149 4.149 15 C -0.190 4.190 16 C 0.044 3.956 17 H 0.073 0.927 18 O -0.375 6.375 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.129 4.129 22 H 0.225 0.775 23 H 0.142 0.858 24 H -0.177 1.177 25 H -0.181 1.181 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.226 0.774 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.706 0.492 0.393 2.779 hybrid contribution -0.760 -0.516 0.024 0.919 sum 1.946 -0.024 0.417 1.990 Atomic orbital electron populations 1.86630 1.17234 1.79980 1.49347 1.25050 0.84272 1.11126 0.97891 0.94881 0.91727 0.74260 0.80668 1.20063 0.97468 0.93570 0.96262 1.20924 1.00404 1.00321 0.93331 1.21465 1.01200 0.94423 0.95454 1.96814 1.72401 1.74063 1.52003 1.21235 1.03821 0.93678 1.01133 1.18885 0.94395 0.83369 0.93865 1.86109 1.74007 1.19096 1.42608 1.22994 0.98977 0.93692 0.85851 1.21232 1.02100 0.91143 0.96108 0.89584 1.21517 1.00228 0.94394 0.98741 1.22281 1.02712 0.96225 0.97798 1.21844 0.97842 0.81122 0.94797 0.92714 1.86516 1.74410 1.19949 1.56625 1.21448 1.01413 0.93840 0.98190 1.21490 1.01984 0.95060 0.96246 1.20419 1.01977 0.93574 0.96974 0.77468 0.85815 1.17718 1.18095 0.84412 0.84201 0.91540 0.91511 0.90676 0.91703 0.90918 0.91468 0.77350 0.90774 0.90908 0.90718 0.91191 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.37 12.84 -35.23 -0.45 -0.82 16 2 C -0.07 0.06 2.80 36.01 0.10 0.16 16 3 Si 0.68 -0.83 29.88 -169.99 -5.08 -5.91 16 4 C -0.07 0.01 5.35 -104.65 -0.56 -0.55 16 5 C -0.13 -0.01 8.41 -39.53 -0.33 -0.34 16 6 C -0.05 -0.03 6.22 -39.54 -0.25 -0.27 16 7 Br -0.04 -0.02 33.70 -68.01 -2.29 -2.31 16 8 C -0.18 -0.05 8.78 -39.41 -0.35 -0.40 16 9 C 0.14 0.12 6.69 -39.22 -0.26 -0.15 16 10 O -0.30 -0.21 9.67 -19.45 -0.19 -0.40 16 11 C 0.06 -0.09 4.12 37.16 0.15 0.06 16 12 C -0.09 0.15 2.43 -90.62 -0.22 -0.07 16 13 H 0.09 -0.07 8.14 -51.93 -0.42 -0.50 16 14 C -0.11 0.16 5.10 -26.73 -0.14 0.02 16 15 C -0.15 0.18 5.54 -26.73 -0.15 0.04 16 16 C 0.10 -0.06 3.47 -26.73 -0.09 -0.15 16 17 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 18 O -0.57 -0.47 13.32 -35.23 -0.47 -0.94 16 19 C -0.11 0.08 5.58 -26.71 -0.15 -0.07 16 20 C -0.11 0.25 5.21 -26.71 -0.14 0.11 16 21 C -0.11 -0.07 9.63 -39.43 -0.38 -0.45 16 22 H 0.38 -0.77 8.70 45.56 0.40 -0.37 16 23 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 24 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 25 H -0.26 -0.18 7.01 56.52 0.40 0.22 16 26 H 0.14 -0.15 4.83 -52.49 -0.25 -0.40 16 27 H 0.14 -0.15 6.30 -52.48 -0.33 -0.48 16 28 H 0.07 -0.14 7.66 -51.93 -0.40 -0.54 16 29 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 30 H 0.07 -0.04 7.82 -51.93 -0.41 -0.45 16 31 H 0.06 -0.11 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 34 H 0.38 -1.13 9.08 45.56 0.41 -0.72 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.14 0.06 8.06 -52.49 -0.42 -0.37 16 LS Contribution 334.19 15.07 5.04 5.04 Total: 0.00 -5.38 334.19 -11.02 -16.40 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -4.82 Total: -8.99 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.76 Total: -2.07 kcal Atomic # 8 Polarization: -1.05 SS G_CDS: -1.11 Total: -2.16 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.08 Total: -5.91 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -5.38 -11.02 -16.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.395 kcal (2) G-P(sol) polarization free energy of solvation -5.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds