Wall clock time and date at job start Mon Mar 8 2021 08:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47484 * 2 1 4 4 C 1.50702 * 109.46758 * 120.00015 * 2 1 3 5 5 C 1.38228 * 119.96534 * 244.99872 * 4 2 1 6 6 C 1.38384 * 120.10274 * 179.97438 * 5 4 2 7 7 Br 1.89103 * 119.98398 * 179.97438 * 6 5 4 8 8 C 1.38206 * 120.03340 * 0.02562 * 6 5 4 9 9 C 1.38735 * 119.93760 * 359.97438 * 8 6 5 10 10 O 1.35906 * 120.05330 * 179.97438 * 9 8 6 11 11 C 1.42899 * 116.99992 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47052 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47280 * 305.00193 * 12 11 10 14 14 C 1.53002 * 109.46978 * 65.00120 * 12 11 10 15 15 C 1.52997 * 109.46978 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 12 17 17 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 20 20 C 1.52996 * 109.46975 * 184.99658 * 12 11 10 21 21 C 1.38175 * 119.97171 * 65.27439 * 4 2 1 22 22 H 0.96705 * 113.99783 * 300.00479 * 1 2 3 23 23 H 1.08996 * 109.47063 * 239.99264 * 2 1 3 24 24 H 1.48506 * 109.99745 * 299.99776 * 3 2 1 25 25 H 1.48503 * 109.99953 * 61.31546 * 3 2 1 26 26 H 1.07997 * 119.95323 * 359.97438 * 5 4 2 27 27 H 1.08006 * 120.03741 * 179.97438 * 8 6 5 28 28 H 1.08994 * 109.47071 * 59.99544 * 11 10 9 29 29 H 1.09000 * 109.46662 * 299.99954 * 11 10 9 30 30 H 1.09002 * 109.47097 * 299.99801 * 14 12 11 31 31 H 1.09001 * 109.47142 * 59.99766 * 14 12 11 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 12 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 12 34 34 H 0.96698 * 114.00355 * 60.00121 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 16 15 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 12 11 38 38 H 1.09001 * 109.47372 * 300.00372 * 20 12 11 39 39 H 1.07997 * 120.01173 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6386 -0.0117 2.1908 6 6 3.1006 -0.6611 3.3221 7 35 4.0685 0.2980 4.6334 8 6 2.8560 -2.0105 3.4935 9 6 2.1463 -2.7133 2.5307 10 8 1.9048 -4.0404 2.6966 11 6 2.4107 -4.6479 3.8870 12 6 2.0429 -6.1330 3.8976 13 1 0.9649 -6.2412 3.7788 14 6 2.7568 -6.8434 2.7457 15 6 2.3884 -8.3283 2.7559 16 6 2.8197 -8.9517 4.0850 17 1 3.8978 -8.8439 4.2039 18 8 2.4762 -10.3387 4.0943 19 6 2.1059 -8.2413 5.2369 20 6 2.4747 -6.7559 5.2266 21 6 1.6893 -2.0608 1.3950 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5139 -0.8899 24 1 1.5617 2.4678 -1.2086 25 1 1.5880 2.4585 1.2242 26 1 2.8309 1.0427 2.0581 27 1 3.2170 -2.5175 4.3763 28 1 1.9739 -4.1596 4.7580 29 1 3.4951 -4.5416 3.9165 30 1 2.4492 -6.3996 1.7988 31 1 3.8349 -6.7352 2.8645 32 1 1.3103 -8.4361 2.6369 33 1 2.8966 -8.8344 1.9350 34 1 2.8941 -10.8521 3.3895 35 1 2.4134 -8.6850 6.1838 36 1 1.0278 -8.3491 5.1178 37 1 1.9662 -6.2498 6.0473 38 1 3.5528 -6.6477 5.3454 39 1 1.1401 -2.6068 0.6423 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_17850308_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:33:36 Heat of formation + Delta-G solvation = -100.966378 kcal Electronic energy + Delta-G solvation = -21827.514285 eV Core-core repulsion = 18361.633099 eV Total energy + Delta-G solvation = -3465.881186 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54331 -40.21175 -39.13133 -37.58420 -36.67560 -33.61579 -32.40434 -31.82838 -31.40181 -30.21642 -27.39408 -26.28183 -23.91486 -23.46276 -22.90118 -21.80498 -20.88012 -19.20850 -18.22074 -18.02430 -17.49661 -17.26996 -17.12229 -16.39929 -16.20034 -15.63531 -15.50199 -15.23325 -14.88780 -14.78966 -14.42073 -14.22046 -14.01524 -13.70168 -13.38199 -13.21929 -13.10409 -12.79176 -12.73078 -12.24335 -12.19992 -12.10226 -11.77905 -11.68366 -11.57919 -11.47570 -11.38004 -11.09890 -10.73280 -10.70806 -9.97169 -9.40584 -4.95229 -0.13396 0.08834 0.46545 1.23079 1.56962 1.89185 2.06104 2.34846 3.21559 3.33042 3.45542 3.62716 3.68051 3.74601 3.77608 3.90419 4.03830 4.08786 4.10571 4.16934 4.27849 4.32437 4.34815 4.42967 4.47458 4.50957 4.55120 4.60992 4.80253 4.90195 4.96689 5.01629 5.05454 5.08658 5.13721 5.15125 5.17582 5.29785 5.39752 5.43978 6.24345 6.42956 6.85039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.078 4.078 3 Si 0.758 3.242 4 C -0.068 4.068 5 C -0.134 4.134 6 C -0.054 4.054 7 Br -0.039 7.039 8 C -0.179 4.179 9 C 0.135 3.865 10 O -0.317 6.317 11 C 0.057 3.943 12 C -0.083 4.083 13 H 0.074 0.926 14 C -0.108 4.108 15 C -0.147 4.147 16 C 0.101 3.899 17 H 0.064 0.936 18 O -0.591 6.591 19 C -0.114 4.114 20 C -0.104 4.104 21 C -0.120 4.120 22 H 0.387 0.613 23 H 0.134 0.866 24 H -0.296 1.296 25 H -0.280 1.280 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.393 0.607 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -0.338 0.364 3.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.187 4.187 3 Si 0.663 3.337 4 C -0.070 4.070 5 C -0.153 4.153 6 C -0.134 4.134 7 Br 0.046 6.954 8 C -0.199 4.199 9 C 0.088 3.912 10 O -0.231 6.231 11 C -0.017 4.017 12 C -0.102 4.102 13 H 0.093 0.907 14 C -0.146 4.146 15 C -0.185 4.185 16 C 0.042 3.958 17 H 0.082 0.918 18 O -0.400 6.400 19 C -0.151 4.151 20 C -0.141 4.141 21 C -0.139 4.139 22 H 0.237 0.763 23 H 0.152 0.848 24 H -0.224 1.224 25 H -0.206 1.206 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.502 0.577 0.719 3.621 hybrid contribution -1.040 -0.565 -0.092 1.187 sum 2.462 0.013 0.627 2.541 Atomic orbital electron populations 1.86601 1.18021 1.80351 1.50192 1.25216 0.83717 1.11659 0.98143 0.94028 0.90543 0.72207 0.76918 1.20067 0.97239 0.93302 0.96348 1.21055 1.00284 1.00787 0.93206 1.21569 1.01477 0.94669 0.95663 1.96810 1.72421 1.74078 1.52043 1.21359 1.03548 0.93625 1.01407 1.18969 0.94628 0.83532 0.94067 1.86097 1.74321 1.19109 1.43586 1.23118 0.99681 0.93482 0.85467 1.21178 1.01372 0.91246 0.96371 0.90746 1.21484 1.00683 0.94041 0.98367 1.22223 1.01901 0.96525 0.97877 1.21923 0.98302 0.80617 0.94951 0.91819 1.86478 1.75039 1.20819 1.57649 1.21476 1.00670 0.94949 0.98044 1.21448 1.02717 0.93887 0.96070 1.20522 1.02260 0.93972 0.97158 0.76319 0.84814 1.22354 1.20592 0.83525 0.83016 0.90735 0.90388 0.91669 0.90886 0.92239 0.90744 0.75735 0.91159 0.92142 0.89939 0.90094 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.83 12.84 -148.98 -1.91 -2.74 16 2 C -0.08 0.13 2.80 71.24 0.20 0.33 16 3 Si 0.76 -1.80 29.88 68.60 2.05 0.25 16 4 C -0.07 0.02 5.35 -19.88 -0.11 -0.08 16 5 C -0.13 0.04 8.41 22.30 0.19 0.22 16 6 C -0.05 -0.04 6.22 22.30 0.14 0.10 16 7 Br -0.04 -0.02 33.70 -20.37 -0.69 -0.71 16 8 C -0.18 -0.03 8.78 22.38 0.20 0.17 16 9 C 0.13 0.21 6.69 22.50 0.15 0.36 16 10 O -0.32 -0.46 9.67 -92.49 -0.89 -1.35 16 11 C 0.06 -0.20 4.12 71.98 0.30 0.10 16 12 C -0.08 0.28 2.43 -10.80 -0.03 0.26 16 13 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C -0.11 0.31 5.10 30.59 0.16 0.47 16 15 C -0.15 0.31 5.54 30.60 0.17 0.48 16 16 C 0.10 -0.11 3.47 30.60 0.11 0.00 16 17 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 18 O -0.59 -1.17 13.32 -148.98 -1.98 -3.15 16 19 C -0.11 0.13 5.58 30.61 0.17 0.30 16 20 C -0.10 0.52 5.21 30.61 0.16 0.68 16 21 C -0.12 -0.18 9.63 22.37 0.22 0.04 16 22 H 0.39 -1.50 8.70 -74.05 -0.64 -2.14 16 23 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 24 H -0.30 -1.45 7.11 99.48 0.71 -0.75 16 25 H -0.28 -0.40 7.01 99.48 0.70 0.30 16 26 H 0.15 -0.39 4.83 -2.91 -0.01 -0.40 16 27 H 0.15 -0.45 6.30 -2.91 -0.02 -0.47 16 28 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 29 H 0.08 -0.44 7.66 -2.39 -0.02 -0.46 16 30 H 0.06 -0.04 7.82 -2.39 -0.02 -0.06 16 31 H 0.07 -0.32 8.14 -2.39 -0.02 -0.33 16 32 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 -0.28 8.14 -2.39 -0.02 -0.29 16 34 H 0.39 -2.27 9.08 -74.06 -0.67 -2.95 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.14 0.19 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -12.37 334.19 -1.63 -14.01 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: -0.22 Total: -9.71 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 2.01 Total: 3.42 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -4.79 Total: -7.25 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.05 Total: 0.25 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -12.37 -1.63 -14.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.961 kcal (2) G-P(sol) polarization free energy of solvation -12.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds