Wall clock time and date at job start Mon Mar 8 2021 08:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47045 * 2 1 4 4 C 1.53000 * 109.47579 * 239.99865 * 2 1 3 5 5 Si 1.86303 * 109.47345 * 119.99506 * 2 1 3 6 6 C 1.86304 * 109.46995 * 300.00336 * 5 2 1 7 7 C 1.86296 * 109.47397 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.46791 * 60.00190 * 5 2 1 9 9 C 1.42903 * 113.99666 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.46830 * 179.97438 * 9 8 5 11 11 O 1.42903 * 109.47067 * 64.99696 * 10 9 8 12 12 C 1.42899 * 114.00038 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46965 * 180.02562 * 12 11 10 14 14 O 1.42893 * 109.47411 * 65.00156 * 13 12 11 15 15 C 1.35904 * 117.00492 * 179.97438 * 14 13 12 16 16 C 1.38713 * 120.05607 * 179.97438 * 15 14 13 17 17 C 1.38165 * 119.96737 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.97200 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46700 * 299.97940 * 18 17 16 20 20 Si 1.86292 * 109.47376 * 179.97438 * 18 17 16 21 21 H 1.48506 * 109.47234 * 179.97438 * 20 18 17 22 22 H 1.48498 * 109.47451 * 299.99953 * 20 18 17 23 23 H 1.48499 * 109.47311 * 60.00124 * 20 18 17 24 24 C 1.38235 * 120.06577 * 0.02562 * 17 16 15 25 25 C 1.38377 * 120.09774 * 359.97438 * 24 17 16 26 26 Br 1.89096 * 119.98022 * 179.97438 * 25 24 17 27 27 C 1.38215 * 120.03789 * 0.02562 * 25 24 17 28 28 H 1.08997 * 109.47332 * 300.00325 * 1 2 3 29 29 H 1.08999 * 109.46907 * 60.00686 * 1 2 3 30 30 H 1.08994 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47300 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46708 * 299.99436 * 3 2 1 33 33 H 1.08997 * 109.47321 * 59.99668 * 3 2 1 34 34 H 1.09004 * 109.46672 * 300.00034 * 4 2 1 35 35 H 1.09001 * 109.47021 * 59.99468 * 4 2 1 36 36 H 1.08995 * 109.47568 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46940 * 180.02562 * 6 5 2 38 38 H 1.08994 * 109.47100 * 299.99392 * 6 5 2 39 39 H 1.09000 * 109.46802 * 59.99995 * 6 5 2 40 40 H 1.09004 * 109.46735 * 300.00171 * 7 5 2 41 41 H 1.09004 * 109.47316 * 59.99968 * 7 5 2 42 42 H 1.08993 * 109.47314 * 180.02562 * 7 5 2 43 43 H 1.09002 * 109.46983 * 60.00309 * 9 8 5 44 44 H 1.08997 * 109.47207 * 299.99580 * 9 8 5 45 45 H 1.09006 * 109.47453 * 305.00194 * 10 9 8 46 46 H 1.08998 * 109.47591 * 184.99961 * 10 9 8 47 47 H 1.09000 * 109.47139 * 60.00238 * 12 11 10 48 48 H 1.09006 * 109.47481 * 300.00401 * 12 11 10 49 49 H 1.09002 * 109.47109 * 304.99895 * 13 12 11 50 50 H 1.09008 * 109.47134 * 185.00269 * 13 12 11 51 51 H 1.08000 * 120.01420 * 0.05015 * 16 15 14 52 52 H 1.08994 * 109.46992 * 59.97647 * 18 17 16 53 53 H 0.96700 * 113.99431 * 179.97438 * 19 18 17 54 54 H 1.07995 * 119.94691 * 179.72563 * 24 17 16 55 55 H 1.07998 * 120.03040 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8781 1.5212 6 6 1.5300 0.0002 3.0423 7 6 4.0140 -0.8774 1.5216 8 8 1.6074 -2.4158 1.5213 9 6 2.0287 -3.1811 2.6522 10 6 1.4629 -4.5988 2.5479 11 8 2.0312 -5.2563 1.4135 12 6 1.5672 -6.5946 1.2244 13 6 2.2386 -7.1973 -0.0112 14 8 3.6440 -7.3136 0.2193 15 6 4.3934 -7.8354 -0.7872 16 6 5.7645 -7.9764 -0.6314 17 6 6.5246 -8.5067 -1.6560 18 6 8.0142 -8.6604 -1.4866 19 8 8.6012 -7.3794 -1.2486 20 14 8.7423 -9.3993 -3.0341 21 1 10.2102 -9.5502 -2.8673 22 1 8.1323 -10.7304 -3.2814 23 1 8.4649 -8.5057 -4.1872 24 6 5.9202 -8.8964 -2.8366 25 6 4.5526 -8.7570 -2.9949 26 35 3.7293 -9.2905 -4.6115 27 6 3.7882 -8.2270 -1.9726 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.8937 -0.5133 3.9323 38 1 1.8933 1.0278 3.0423 39 1 0.4400 0.0001 3.0422 40 1 4.3777 -1.3911 0.6316 41 1 4.3770 0.1504 1.5218 42 1 4.3774 -1.3915 2.4114 43 1 1.6638 -2.7110 3.5654 44 1 3.1175 -3.2250 2.6761 45 1 0.3798 -4.5505 2.4348 46 1 1.7092 -5.1559 3.4518 47 1 0.4863 -6.5879 1.0842 48 1 1.8161 -7.1928 2.1010 49 1 2.0637 -6.5511 -0.8714 50 1 1.8197 -8.1844 -0.2072 51 1 6.2375 -7.6722 0.2906 52 1 8.2178 -9.3163 -0.6403 53 1 9.5605 -7.4025 -1.1293 54 1 6.5168 -9.3065 -3.6379 55 1 2.7208 -8.1187 -2.0962 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_17850308_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:41:50 Heat of formation + Delta-G solvation = -180.783997 kcal Electronic energy + Delta-G solvation = -32142.843485 eV Core-core repulsion = 27736.225517 eV Total energy + Delta-G solvation = -4406.617968 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.44726 -39.55748 -38.85235 -37.53868 -37.25914 -36.82511 -33.69218 -32.54092 -31.43913 -30.36563 -29.57795 -29.15599 -29.05818 -27.83767 -27.38211 -27.07448 -24.16528 -23.60224 -23.43570 -21.91309 -20.41459 -19.12327 -18.52762 -18.13055 -17.94100 -17.65306 -17.49119 -16.61294 -16.34109 -16.19298 -15.89447 -15.77565 -15.56203 -15.43048 -14.89153 -14.85127 -14.75751 -14.64952 -14.48125 -14.14107 -14.01411 -13.91292 -13.60737 -13.52114 -13.36673 -13.18021 -12.99102 -12.95942 -12.92803 -12.81072 -12.66321 -12.47503 -12.40654 -12.29084 -12.07945 -11.99982 -11.81913 -11.77560 -11.68536 -11.53133 -11.48816 -11.44053 -11.17820 -10.54935 -10.41691 -10.28955 -10.04547 -9.90864 -9.40788 -0.13157 0.06993 0.41459 1.10568 1.43187 1.48581 1.55770 1.80608 1.88396 2.06820 2.14731 2.34086 2.50367 2.69569 3.27953 3.70306 3.76897 3.78838 3.94601 4.03852 4.09018 4.11929 4.12549 4.14482 4.16882 4.24632 4.32535 4.40024 4.43599 4.46341 4.50153 4.57816 4.60175 4.68832 4.72492 4.74945 4.79329 4.80346 4.81358 4.83304 4.85076 4.87534 4.99486 5.00934 5.08727 5.09155 5.15858 5.20293 5.33612 5.38137 5.40488 5.44308 5.53941 5.59757 5.64665 6.21021 6.31512 6.80517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.636 6.636 9 C 0.074 3.926 10 C 0.054 3.946 11 O -0.400 6.400 12 C 0.060 3.940 13 C 0.051 3.949 14 O -0.313 6.313 15 C 0.136 3.864 16 C -0.117 4.117 17 C -0.036 4.036 18 C -0.079 4.079 19 O -0.560 6.560 20 Si 0.966 3.034 21 H -0.245 1.245 22 H -0.254 1.254 23 H -0.271 1.271 24 C -0.148 4.148 25 C -0.054 4.054 26 Br -0.040 7.040 27 C -0.182 4.182 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.102 0.898 51 H 0.145 0.855 52 H 0.108 0.892 53 H 0.402 0.598 54 H 0.135 0.865 55 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -1.501 4.793 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.425 4.425 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.442 2.558 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.595 6.595 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.320 6.320 12 C -0.017 4.017 13 C -0.024 4.024 14 O -0.227 6.227 15 C 0.089 3.911 16 C -0.136 4.136 17 C -0.037 4.037 18 C -0.189 4.189 19 O -0.369 6.369 20 Si 0.790 3.210 21 H -0.169 1.169 22 H -0.178 1.178 23 H -0.196 1.196 24 C -0.168 4.168 25 C -0.134 4.134 26 Br 0.046 6.954 27 C -0.202 4.202 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.163 0.837 52 H 0.126 0.874 53 H 0.252 0.748 54 H 0.153 0.847 55 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.785 -1.905 3.295 3.886 hybrid contribution 0.406 0.504 0.499 0.817 sum -0.379 -1.402 3.794 4.062 Atomic orbital electron populations 1.21521 0.94016 1.01715 1.01937 1.25909 1.00583 1.02988 1.12984 1.21600 1.01134 0.94658 1.02331 1.21515 1.00715 0.99894 0.97131 0.76271 0.62068 0.53033 0.64445 1.27021 1.07008 1.09756 1.17701 1.27157 1.26130 1.04664 1.04118 1.85388 1.79238 1.46523 1.48389 1.22316 0.99328 0.90771 0.87687 1.22837 0.98402 0.92076 0.88928 1.87994 1.68543 1.26743 1.48763 1.22677 0.98442 0.83432 0.97111 1.23192 0.77858 1.01889 0.99411 1.86157 1.21142 1.77461 1.37915 1.18998 0.91465 0.93367 0.87285 1.20513 0.90348 1.01622 1.01090 1.19258 0.95023 0.97034 0.92368 1.24725 0.91494 0.91032 1.11644 1.86468 1.27891 1.27371 1.95214 0.85462 0.80099 0.79043 0.76446 1.16887 1.17833 1.19610 1.20975 0.93527 1.04124 0.98174 1.21507 0.94849 1.03498 0.93511 1.96775 1.80699 1.90012 1.27918 1.21345 1.01565 1.04541 0.92791 0.91765 0.93378 0.92652 0.92103 0.93120 0.91496 0.92929 0.93262 0.92643 0.90737 0.90350 0.90800 0.92035 0.90432 0.91217 0.88792 0.91963 0.91565 0.90167 0.88826 0.91265 0.91078 0.87992 0.83685 0.87446 0.74756 0.84741 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.20 7.85 71.98 0.56 0.36 16 2 C -0.38 -0.54 0.53 -10.79 -0.01 -0.54 16 3 C -0.14 -0.02 7.85 71.98 0.56 0.54 16 4 C -0.14 -0.50 7.85 71.98 0.56 0.07 16 5 Si 1.31 -0.71 8.45 68.60 0.58 -0.13 16 6 C -0.51 1.06 8.50 113.37 0.96 2.02 16 7 C -0.52 -0.71 8.50 113.37 0.96 0.25 16 8 O -0.64 -1.70 8.52 -144.33 -1.23 -2.93 16 9 C 0.07 -0.06 5.50 71.98 0.40 0.34 16 10 C 0.05 -0.06 6.32 71.98 0.45 0.40 16 11 O -0.40 -1.71 10.27 -135.05 -1.39 -3.10 16 12 C 0.06 -0.09 6.32 71.98 0.45 0.36 16 13 C 0.05 -0.02 5.12 71.98 0.37 0.35 16 14 O -0.31 -1.72 10.10 -87.83 -0.89 -2.61 16 15 C 0.14 0.77 6.69 22.50 0.15 0.92 16 16 C -0.12 -0.63 9.55 22.37 0.21 -0.42 16 17 C -0.04 -0.15 5.42 -19.88 -0.11 -0.26 16 18 C -0.08 0.07 2.81 71.24 0.20 0.27 16 19 O -0.56 -0.03 12.74 -148.98 -1.90 -1.93 16 20 Si 0.97 -0.64 25.07 68.60 1.72 1.08 16 21 H -0.25 0.48 7.11 99.48 0.71 1.19 16 22 H -0.25 -0.13 7.11 99.48 0.71 0.58 16 23 H -0.27 -1.02 7.11 99.48 0.71 -0.32 16 24 C -0.15 -0.79 8.41 22.30 0.19 -0.60 16 25 C -0.05 -0.30 6.22 22.30 0.14 -0.16 16 26 Br -0.04 -0.18 33.70 -20.37 -0.69 -0.86 16 27 C -0.18 -0.78 8.78 22.38 0.20 -0.58 16 28 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 29 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.05 0.13 7.97 -2.39 -0.02 0.11 16 31 H 0.06 -0.05 7.79 -2.38 -0.02 -0.07 16 32 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 34 H 0.05 0.27 7.97 -2.39 -0.02 0.25 16 35 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.05 0.17 7.79 -2.39 -0.02 0.16 16 37 H 0.07 -0.26 7.48 -2.39 -0.02 -0.28 16 38 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 40 H 0.06 0.24 7.79 -2.38 -0.02 0.22 16 41 H 0.08 0.01 7.79 -2.39 -0.02 -0.01 16 42 H 0.07 0.04 7.48 -2.39 -0.02 0.02 16 43 H 0.09 -0.60 7.21 -2.39 -0.02 -0.61 16 44 H 0.06 -0.05 7.21 -2.39 -0.02 -0.07 16 45 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 46 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 49 H 0.07 0.03 7.66 -2.39 -0.02 0.01 16 50 H 0.10 -0.53 7.66 -2.38 -0.02 -0.55 16 51 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 52 H 0.11 -0.63 7.96 -2.39 -0.02 -0.65 16 53 H 0.40 -3.78 8.74 -74.06 -0.65 -4.43 16 54 H 0.14 0.50 4.87 -2.91 -0.01 0.49 16 55 H 0.15 0.07 6.30 -2.91 -0.02 0.05 16 Total: 0.00 -15.73 458.29 3.45 -12.28 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: 0.97 Total: -5.12 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.27 Total: 3.31 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -5.40 Total: -10.56 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.30 Total: 0.96 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.86 kcal Total: -15.73 3.45 -12.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.503 kcal (2) G-P(sol) polarization free energy of solvation -15.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds