Wall clock time and date at job start Mon Mar 8 2021 08:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.53009 * 112.90612 * 66.33784 * 3 2 1 5 5 F 1.39899 * 109.46641 * 283.26984 * 4 3 2 6 6 F 1.39899 * 109.47135 * 43.26735 * 4 3 2 7 7 F 1.39902 * 109.47022 * 163.26852 * 4 3 2 8 8 C 1.53778 * 113.61914 * 295.08420 * 3 2 1 9 9 C 1.53787 * 87.07894 * 270.88604 * 8 3 2 10 10 H 1.08998 * 113.60978 * 219.93345 * 9 8 3 11 11 C 1.52993 * 113.61502 * 89.11630 * 9 8 3 12 12 O 1.42897 * 109.47193 * 174.99787 * 11 9 8 13 13 C 1.35897 * 117.00557 * 179.97438 * 12 11 9 14 14 C 1.38692 * 120.04472 * 0.02562 * 13 12 11 15 15 C 1.38262 * 119.92988 * 180.23191 * 14 13 12 16 16 Br 1.89106 * 119.97904 * 179.74481 * 15 14 13 17 17 C 1.38334 * 120.03521 * 359.48706 * 15 14 13 18 18 C 1.38273 * 120.10254 * 0.51012 * 17 15 14 19 19 C 1.50700 * 119.96607 * 179.77219 * 18 17 15 20 20 O 1.42898 * 109.47340 * 119.97960 * 19 18 17 21 21 Si 1.86302 * 109.47109 * 359.97438 * 19 18 17 22 22 C 1.38125 * 120.06157 * 359.74562 * 18 17 15 23 23 C 1.53780 * 87.07978 * 334.56224 * 9 8 3 24 24 H 1.08993 * 109.47139 * 182.28196 * 1 2 3 25 25 H 1.08999 * 109.47218 * 302.28686 * 1 2 3 26 26 H 1.09003 * 109.46720 * 62.28576 * 1 2 3 27 27 H 1.08999 * 113.61331 * 156.33509 * 8 3 2 28 28 H 1.09000 * 113.68951 * 25.44148 * 8 3 2 29 29 H 1.09001 * 109.47614 * 54.99685 * 11 9 8 30 30 H 1.08998 * 109.47069 * 294.99727 * 11 9 8 31 31 H 1.07999 * 120.03976 * 359.94496 * 14 13 12 32 32 H 1.08004 * 119.95001 * 180.28278 * 17 15 14 33 33 H 1.08999 * 109.46585 * 239.97534 * 19 18 17 34 34 H 0.96698 * 113.99616 * 299.99577 * 20 19 18 35 35 H 1.48502 * 109.99768 * 180.02562 * 21 19 18 36 36 H 1.48499 * 110.00084 * 301.31723 * 21 19 18 37 37 H 1.08005 * 120.01255 * 179.97438 * 22 18 17 38 38 H 1.09002 * 113.60994 * 139.97877 * 23 9 8 39 39 H 1.08991 * 113.61732 * 270.88639 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7357 2.0796 1.2909 5 9 0.4212 2.5582 1.2770 6 9 1.9116 1.2316 2.3896 7 9 2.6233 3.1568 1.3864 8 6 1.7152 2.1113 -1.2761 9 6 2.9883 1.4862 -1.8707 10 1 3.5814 2.1834 -2.4625 11 6 2.7412 0.1580 -2.5887 12 8 3.9530 -0.2836 -3.2038 13 6 3.9060 -1.4572 -3.8873 14 6 2.7179 -2.1686 -3.9648 15 6 2.6740 -3.3648 -4.6568 16 35 1.0565 -4.3394 -4.7572 17 6 3.8111 -3.8462 -5.2802 18 6 4.9963 -3.1381 -5.2040 19 6 6.2346 -3.6681 -5.8800 20 8 6.6899 -2.7222 -6.8496 21 14 5.8392 -5.2812 -6.7240 22 6 5.0463 -1.9453 -4.5093 23 6 3.4879 1.3219 -0.4257 24 1 -0.3633 -1.0268 0.0409 25 1 -0.3633 0.5489 0.8688 26 1 -0.3633 0.4780 -0.9098 27 1 1.7826 3.1902 -1.1365 28 1 0.8006 1.8065 -1.7848 29 1 1.9751 0.2945 -3.3519 30 1 2.4068 -0.5880 -1.8677 31 1 1.8292 -1.7910 -3.4812 32 1 3.7741 -4.7785 -5.8243 33 1 7.0142 -3.8290 -5.1355 34 1 6.0454 -2.5302 -7.5445 35 1 7.0525 -5.8146 -7.3940 36 1 5.3346 -6.2635 -5.7312 37 1 5.9726 -1.3931 -4.4499 38 1 4.0043 0.3787 -0.2469 39 1 4.0399 2.1850 -0.0537 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_17850308_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:11 Heat of formation + Delta-G solvation = -190.049194 kcal Electronic energy + Delta-G solvation = -29684.851386 eV Core-core repulsion = 24806.745353 eV Total energy + Delta-G solvation = -4878.106033 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.022 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.27387 -48.80753 -48.74576 -41.81650 -41.04902 -39.15590 -37.47058 -36.98893 -33.55921 -32.06004 -30.84593 -29.96144 -28.19782 -27.57901 -26.77840 -26.70799 -23.58788 -23.52971 -22.29508 -20.60527 -19.85615 -19.56650 -19.27325 -19.08430 -17.87914 -17.48934 -17.29972 -17.17991 -16.88115 -16.47816 -16.17556 -15.84228 -15.67211 -15.60438 -15.54764 -15.27348 -15.17561 -14.95815 -14.90999 -14.80820 -14.46251 -14.26926 -14.14289 -14.04737 -13.49823 -13.22146 -13.10741 -12.89703 -12.69258 -12.51808 -12.17593 -12.06464 -11.97831 -11.78991 -11.60832 -11.50795 -11.36695 -10.82115 -10.53230 -9.92673 -9.38900 -5.02131 -0.11485 0.10438 0.47992 1.24990 1.51951 1.61450 1.88834 2.00131 2.08491 2.37694 2.55133 2.61639 2.88387 3.29321 3.34241 3.38363 3.49247 3.55938 3.70981 3.79484 3.92430 4.11163 4.12879 4.23894 4.25022 4.29004 4.35591 4.42200 4.48080 4.49971 4.53455 4.64229 4.69741 4.79131 4.82022 4.92329 4.99481 5.05682 5.16890 5.40724 5.70133 6.24079 6.74586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.345 6.345 3 C 0.036 3.964 4 C 0.432 3.568 5 F -0.184 7.184 6 F -0.189 7.189 7 F -0.176 7.176 8 C -0.133 4.133 9 C -0.092 4.092 10 H 0.116 0.884 11 C 0.064 3.936 12 O -0.316 6.316 13 C 0.136 3.864 14 C -0.179 4.179 15 C -0.054 4.054 16 Br -0.039 7.039 17 C -0.133 4.133 18 C -0.071 4.071 19 C -0.068 4.068 20 O -0.550 6.550 21 Si 0.766 3.234 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.111 0.889 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.397 0.603 35 H -0.292 1.292 36 H -0.284 1.284 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 1.669 -3.864 5.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.263 6.263 3 C -0.007 4.007 4 C 0.377 3.623 5 F -0.165 7.165 6 F -0.170 7.170 7 F -0.158 7.158 8 C -0.170 4.170 9 C -0.111 4.111 10 H 0.134 0.866 11 C -0.010 4.010 12 O -0.229 6.229 13 C 0.089 3.911 14 C -0.199 4.199 15 C -0.133 4.133 16 Br 0.047 6.953 17 C -0.152 4.152 18 C -0.073 4.073 19 C -0.178 4.178 20 O -0.358 6.358 21 Si 0.671 3.329 22 C -0.138 4.138 23 C -0.152 4.152 24 H 0.129 0.871 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.133 0.867 34 H 0.247 0.753 35 H -0.220 1.220 36 H -0.211 1.211 37 H 0.158 0.842 38 H 0.107 0.893 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.690 0.426 -3.508 4.442 hybrid contribution 0.006 0.692 1.348 1.515 sum -2.685 1.118 -2.161 3.623 Atomic orbital electron populations 1.23298 0.78709 1.05184 1.02032 1.88076 1.22077 1.22339 1.93846 1.24194 1.00584 0.86364 0.89544 1.21552 0.74094 0.78681 0.87939 1.93178 1.37307 1.89191 1.96862 1.93187 1.95027 1.70897 1.57930 1.93172 1.68564 1.57447 1.96610 1.23630 0.99866 1.01464 0.92047 1.22021 0.97934 0.96121 0.94983 0.86587 1.22940 0.85080 0.96160 0.96863 1.86054 1.37001 1.34907 1.64974 1.18936 0.93600 0.86014 0.92533 1.21342 0.98789 0.95824 1.03983 1.21568 0.93004 0.96484 1.02286 1.96807 1.27831 1.72910 1.97766 1.21017 0.91214 1.01173 1.01816 1.20154 0.95164 0.94367 0.97601 1.25140 0.95331 1.02884 0.94494 1.86491 1.45620 1.63502 1.40166 0.93746 0.82481 0.73199 0.83443 1.20498 0.97772 0.96809 0.98763 1.23340 0.90667 1.05624 0.95602 0.87081 0.93645 0.90881 0.85820 0.87346 0.89934 0.90138 0.83168 0.83464 0.86659 0.75286 1.21981 1.21058 0.84173 0.89312 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.44 113.37 1.18 1.17 16 2 O -0.35 0.25 8.35 -148.98 -1.24 -1.00 16 3 C 0.04 -0.08 0.85 -10.26 -0.01 -0.09 16 4 C 0.43 0.75 2.52 71.99 0.18 0.93 16 5 F -0.18 -0.38 15.27 44.97 0.69 0.31 16 6 F -0.19 -1.16 17.09 44.97 0.77 -0.39 16 7 F -0.18 -0.33 15.82 44.97 0.71 0.38 16 8 C -0.13 0.95 6.52 31.12 0.20 1.16 16 9 C -0.09 0.54 4.20 -10.27 -0.04 0.49 16 10 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 11 C 0.06 -0.24 4.32 71.98 0.31 0.07 16 12 O -0.32 -0.28 10.14 -92.40 -0.94 -1.22 16 13 C 0.14 0.20 6.69 22.50 0.15 0.35 16 14 C -0.18 -0.03 8.78 22.38 0.20 0.16 16 15 C -0.05 -0.04 6.22 22.30 0.14 0.10 16 16 Br -0.04 -0.01 33.70 -20.37 -0.69 -0.70 16 17 C -0.13 0.06 8.41 22.30 0.19 0.25 16 18 C -0.07 0.03 5.39 -19.88 -0.11 -0.08 16 19 C -0.07 0.11 2.82 71.24 0.20 0.31 16 20 O -0.55 0.71 12.77 -148.98 -1.90 -1.20 16 21 Si 0.77 -1.93 29.79 68.60 2.04 0.11 16 22 C -0.12 -0.16 9.55 22.37 0.21 0.05 16 23 C -0.12 0.39 6.89 31.12 0.21 0.61 16 24 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H 0.04 -0.11 6.29 -2.39 -0.02 -0.12 16 26 H 0.07 -0.60 6.74 -2.39 -0.02 -0.62 16 27 H 0.12 -1.10 8.07 -2.39 -0.02 -1.12 16 28 H 0.11 -1.05 6.68 -2.39 -0.02 -1.07 16 29 H 0.08 -0.54 7.66 -2.39 -0.02 -0.56 16 30 H 0.08 -0.21 5.64 -2.39 -0.01 -0.22 16 31 H 0.15 -0.40 6.30 -2.91 -0.02 -0.42 16 32 H 0.15 -0.47 4.87 -2.91 -0.01 -0.49 16 33 H 0.12 -0.10 7.96 -2.39 -0.02 -0.12 16 34 H 0.40 -3.68 8.70 -74.06 -0.64 -4.33 16 35 H -0.29 -1.32 7.11 99.48 0.71 -0.61 16 36 H -0.28 -0.69 7.11 99.48 0.71 0.01 16 37 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 38 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 39 H 0.12 -0.63 7.00 -2.39 -0.02 -0.64 16 Total: 0.00 -13.07 349.07 2.98 -10.09 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: 0.52 Total: -11.88 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 3.02 Total: 5.49 kcal Atomic # 8 Polarization: 0.67 SS G_CDS: -4.08 Total: -3.41 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 2.17 Total: 0.29 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.04 Total: 0.11 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -13.07 2.98 -10.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.962 kcal (2) G-P(sol) polarization free energy of solvation -13.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds