Wall clock time and date at job start Mon Mar 8 2021 09:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 C 1.52999 * 109.47046 * 240.00840 * 2 1 3 5 5 Si 1.86295 * 109.47531 * 120.00448 * 2 1 3 6 6 C 1.86301 * 109.46959 * 300.00265 * 5 2 1 7 7 C 1.86296 * 109.47268 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47026 * 60.00013 * 5 2 1 9 9 C 1.42896 * 113.99897 * 179.97438 * 8 5 2 10 10 C 1.53006 * 109.47265 * 180.02562 * 9 8 5 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 8 12 12 O 1.42905 * 109.46728 * 180.02562 * 11 10 9 13 13 C 1.35896 * 117.00039 * 179.97438 * 12 11 10 14 14 C 1.38719 * 120.05266 * 179.72534 * 13 12 11 15 15 C 1.38176 * 119.96294 * 179.67714 * 14 13 12 16 16 C 1.50701 * 119.96778 * 180.32023 * 15 14 13 17 17 O 1.42906 * 109.46632 * 300.29837 * 16 15 14 18 18 Si 1.86294 * 109.47230 * 180.29894 * 16 15 14 19 19 H 1.48509 * 109.47126 * 59.99598 * 18 16 15 20 20 H 1.48500 * 109.47137 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46886 * 300.00030 * 18 16 15 22 22 C 1.38223 * 120.06438 * 0.61811 * 15 14 13 23 23 C 1.38379 * 120.10378 * 359.67680 * 22 15 14 24 24 Br 1.89102 * 119.98447 * 180.02562 * 23 22 15 25 25 C 1.38215 * 120.03619 * 0.02562 * 23 22 15 26 26 H 1.09007 * 109.47216 * 299.98865 * 1 2 3 27 27 H 1.09000 * 109.47794 * 59.99750 * 1 2 3 28 28 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46930 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47788 * 300.00643 * 3 2 1 31 31 H 1.09010 * 109.46787 * 60.00605 * 3 2 1 32 32 H 1.09005 * 109.47172 * 299.99514 * 4 2 1 33 33 H 1.09000 * 109.47305 * 59.99111 * 4 2 1 34 34 H 1.08995 * 109.47215 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46738 * 179.97438 * 6 5 2 36 36 H 1.09005 * 109.46861 * 299.99560 * 6 5 2 37 37 H 1.08995 * 109.47384 * 59.99925 * 6 5 2 38 38 H 1.08994 * 109.47376 * 300.00249 * 7 5 2 39 39 H 1.09005 * 109.47331 * 59.99963 * 7 5 2 40 40 H 1.09000 * 109.47532 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.47075 * 60.00299 * 9 8 5 42 42 H 1.08996 * 109.47405 * 300.00475 * 9 8 5 43 43 H 1.09000 * 109.46866 * 60.00127 * 10 9 8 44 44 H 1.09001 * 109.46611 * 300.00244 * 10 9 8 45 45 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 46 46 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 47 47 H 1.08001 * 120.01508 * 359.97089 * 14 13 12 48 48 H 1.08999 * 109.47050 * 60.29772 * 16 15 14 49 49 H 0.96697 * 113.99606 * 299.99767 * 17 16 15 50 50 H 1.08002 * 119.95201 * 179.70279 * 22 15 14 51 51 H 1.07996 * 120.03394 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 14 2.1511 -0.8783 1.5210 6 6 1.5301 -0.0002 3.0422 7 6 4.0141 -0.8776 1.5213 8 8 1.6075 -2.4161 1.5209 9 6 2.0297 -3.1818 2.6510 10 6 1.4649 -4.5999 2.5461 11 6 1.9164 -5.4196 3.7565 12 8 1.3894 -6.7443 3.6581 13 6 1.6992 -7.6076 4.6608 14 6 1.2163 -8.9078 4.6321 15 6 1.5380 -9.7860 5.6492 16 6 1.0194 -11.2006 5.6144 17 8 -0.4095 -11.1838 5.6038 18 14 1.6187 -12.1189 7.1204 19 1 1.1225 -11.4396 8.3443 20 1 1.1072 -13.5126 7.0864 21 1 3.1035 -12.1361 7.1313 22 6 2.3298 -9.3666 6.7016 23 6 2.8079 -8.0685 6.7362 24 35 3.8915 -7.4985 8.1773 25 6 2.4938 -7.1882 5.7179 26 1 -0.3634 0.5137 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 1.6767 -1.7488 -1.2495 33 1 1.6765 -0.2072 -2.1393 34 1 3.1299 -0.7207 -1.2496 35 1 1.8931 -0.5144 3.9321 36 1 1.8934 1.0275 3.0423 37 1 0.4401 -0.0003 3.0423 38 1 4.3778 -1.3910 0.6313 39 1 4.3770 0.1503 1.5216 40 1 4.3775 -1.3911 2.4114 41 1 1.6656 -2.7121 3.5647 42 1 3.1185 -3.2256 2.6740 43 1 1.8293 -5.0695 1.6324 44 1 0.3760 -4.5564 2.5229 45 1 1.5516 -4.9500 4.6700 46 1 3.0053 -5.4632 3.7801 47 1 0.5933 -9.2347 3.8127 48 1 1.3836 -11.6990 4.7160 49 1 -0.8035 -10.7544 6.3754 50 1 2.5761 -10.0532 7.4981 51 1 2.8673 -6.1753 5.7447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_17850308_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:35 Heat of formation + Delta-G solvation = -143.236415 kcal Electronic energy + Delta-G solvation = -27352.261209 eV Core-core repulsion = 23421.491237 eV Total energy + Delta-G solvation = -3930.769972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 404.098 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.47138 -39.41711 -38.17760 -37.38493 -36.82444 -33.86816 -33.34720 -31.70460 -30.31002 -29.36957 -29.05497 -27.83922 -27.37422 -27.35591 -26.30340 -23.61843 -22.99308 -21.95446 -20.41386 -19.22958 -18.06225 -17.92353 -17.50359 -17.34100 -17.03962 -16.32704 -16.03183 -15.98245 -15.68366 -15.32558 -15.03062 -14.85966 -14.80039 -14.63988 -14.50997 -14.33779 -13.94293 -13.64691 -13.38477 -13.29458 -13.22852 -13.15939 -13.14666 -12.95152 -12.92751 -12.75267 -12.40284 -12.39467 -12.20071 -12.14247 -12.01173 -11.73270 -11.70115 -11.66689 -11.52745 -11.40792 -11.33431 -11.29177 -10.51698 -10.30451 -10.05259 -9.93949 -9.41412 -0.12970 0.07423 0.44174 1.11840 1.43040 1.44161 1.50421 1.79086 1.88793 2.10311 2.13534 2.35836 2.53089 3.38344 3.56210 3.76540 3.81123 3.88703 3.95871 4.08066 4.10543 4.12524 4.12939 4.19910 4.35159 4.37105 4.42572 4.46934 4.50455 4.62558 4.75051 4.75454 4.78906 4.80130 4.82967 4.83034 4.88277 4.98303 5.00433 5.06203 5.09518 5.09574 5.10250 5.15286 5.22259 5.35310 5.40373 5.41325 5.45092 5.55489 5.61503 5.65370 6.24448 6.67124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.319 2.681 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.079 3.921 10 C -0.120 4.120 11 C 0.050 3.950 12 O -0.319 6.319 13 C 0.135 3.865 14 C -0.115 4.115 15 C -0.071 4.071 16 C -0.075 4.075 17 O -0.547 6.547 18 Si 0.970 3.030 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.255 1.255 22 C -0.145 4.145 23 C -0.055 4.055 24 Br -0.042 7.042 25 C -0.179 4.179 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.146 0.854 48 H 0.134 0.866 49 H 0.390 0.610 50 H 0.137 0.863 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 1.572 1.372 2.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.004 3.996 10 C -0.158 4.158 11 C -0.024 4.024 12 O -0.233 6.233 13 C 0.088 3.912 14 C -0.134 4.134 15 C -0.072 4.072 16 C -0.185 4.185 17 O -0.354 6.354 18 Si 0.793 3.207 19 H -0.174 1.174 20 H -0.193 1.193 21 H -0.179 1.179 22 C -0.165 4.165 23 C -0.134 4.134 24 Br 0.044 6.956 25 C -0.200 4.200 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.163 0.837 48 H 0.152 0.848 49 H 0.240 0.760 50 H 0.154 0.846 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.745 0.840 1.760 2.617 hybrid contribution -0.124 1.087 -0.146 1.103 sum 1.621 1.927 1.614 2.991 Atomic orbital electron populations 1.21543 0.94335 1.01734 1.01814 1.25966 1.00369 1.03090 1.13348 1.21601 1.01295 0.94694 1.02185 1.21542 1.01029 0.99995 0.96862 0.76140 0.62505 0.52575 0.63933 1.27099 1.06858 1.09867 1.18157 1.27099 1.25200 1.05046 1.04640 1.85321 1.79701 1.46687 1.48257 1.22008 0.99203 0.90983 0.87418 1.21478 1.02892 0.93714 0.97681 1.22962 0.99634 0.79661 1.00185 1.86086 1.71131 1.22912 1.43149 1.18983 0.94193 0.90468 0.87535 1.20530 1.01906 0.90465 1.00542 1.20183 0.96737 0.97062 0.93263 1.25012 0.85054 0.94968 1.13489 1.86511 1.16880 1.82166 1.49878 0.85385 0.80044 0.78884 0.76339 1.17380 1.19316 1.17863 1.21041 1.00540 0.95075 0.99812 1.21554 1.00554 0.96042 0.95279 1.96800 1.66171 1.90286 1.42336 1.21374 1.02692 1.01578 0.94344 0.92054 0.93445 0.92576 0.91773 0.93245 0.91776 0.92573 0.93446 0.92058 0.90783 0.90416 0.91219 0.91217 0.90418 0.90782 0.90743 0.90755 0.90403 0.90410 0.90022 0.90040 0.83666 0.84805 0.76023 0.84579 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 2 C -0.39 0.35 0.53 -10.79 -0.01 0.34 16 3 C -0.14 0.24 7.85 71.98 0.56 0.81 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 5 Si 1.32 -4.72 8.45 68.60 0.58 -4.14 16 6 C -0.52 1.74 8.50 113.37 0.96 2.70 16 7 C -0.52 1.73 8.50 113.37 0.96 2.70 16 8 O -0.64 0.65 8.56 -148.98 -1.28 -0.63 16 9 C 0.08 -0.37 5.12 71.98 0.37 0.00 16 10 C -0.12 0.36 5.95 30.60 0.18 0.54 16 11 C 0.05 -0.20 4.74 71.98 0.34 0.14 16 12 O -0.32 -0.54 10.14 -92.39 -0.94 -1.48 16 13 C 0.13 0.23 6.69 22.51 0.15 0.38 16 14 C -0.12 -0.16 9.55 22.37 0.21 0.06 16 15 C -0.07 0.00 5.39 -19.88 -0.11 -0.10 16 16 C -0.07 0.17 2.82 71.24 0.20 0.37 16 17 O -0.55 0.58 12.76 -148.98 -1.90 -1.33 16 18 Si 0.97 -1.73 25.07 68.60 1.72 -0.01 16 19 H -0.25 0.37 7.11 99.48 0.71 1.08 16 20 H -0.27 -0.36 7.11 99.48 0.71 0.35 16 21 H -0.25 0.14 7.11 99.48 0.71 0.85 16 22 C -0.14 -0.14 8.41 22.30 0.19 0.05 16 23 C -0.05 -0.09 6.22 22.30 0.14 0.05 16 24 Br -0.04 -0.06 33.70 -20.37 -0.69 -0.74 16 25 C -0.18 -0.04 8.78 22.38 0.20 0.15 16 26 H 0.06 -0.08 7.79 -2.38 -0.02 -0.10 16 27 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.06 0.06 7.97 -2.38 -0.02 0.04 16 29 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 30 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 -0.21 7.79 -2.38 -0.02 -0.23 16 32 H 0.06 0.06 7.97 -2.38 -0.02 0.04 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 35 H 0.07 -0.35 7.48 -2.39 -0.02 -0.37 16 36 H 0.08 -0.29 7.79 -2.38 -0.02 -0.31 16 37 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 38 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 39 H 0.08 -0.29 7.79 -2.38 -0.02 -0.31 16 40 H 0.07 -0.35 7.48 -2.39 -0.02 -0.37 16 41 H 0.07 -0.60 7.21 -2.39 -0.02 -0.61 16 42 H 0.07 -0.59 7.21 -2.39 -0.02 -0.61 16 43 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.08 -0.55 7.66 -2.39 -0.02 -0.57 16 46 H 0.08 -0.55 7.66 -2.39 -0.02 -0.57 16 47 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 48 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 49 H 0.39 -2.83 8.70 -74.06 -0.64 -3.48 16 50 H 0.14 -0.07 4.87 -2.91 -0.01 -0.09 16 51 H 0.16 -0.56 6.30 -2.91 -0.02 -0.57 16 Total: 0.00 -10.32 424.31 4.00 -6.32 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: 1.01 Total: -7.23 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.49 Total: 9.23 kcal Atomic # 8 Polarization: 0.68 SS G_CDS: -4.11 Total: -3.43 kcal Atomic # 14 Polarization: -6.45 SS G_CDS: 2.30 Total: -4.15 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.69 Total: -0.74 kcal Total: -10.32 4.00 -6.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.920 kcal (2) G-P(sol) polarization free energy of solvation -10.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds