Wall clock time and date at job start Mon Mar 8 2021 07:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86304 * 109.47195 * 2 1 4 4 C 1.86299 * 109.47275 * 239.99980 * 2 1 3 5 5 C 1.86808 * 109.47086 * 120.00100 * 2 1 3 6 6 C 1.38236 * 119.99926 * 90.00060 * 5 2 1 7 7 C 1.38238 * 119.99523 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00126 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99645 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46921 * 90.00153 * 9 8 7 11 11 C 1.35901 * 116.99894 * 179.97438 * 10 9 8 12 12 C 1.38718 * 120.05205 * 180.02562 * 11 10 9 13 13 C 1.38169 * 119.96275 * 180.02562 * 12 11 10 14 14 C 1.50706 * 119.96610 * 179.97438 * 13 12 11 15 15 O 1.42897 * 109.46933 * 299.97628 * 14 13 12 16 16 Si 1.86298 * 109.47131 * 179.97438 * 14 13 12 17 17 H 1.48498 * 109.47112 * 60.00141 * 16 14 13 18 18 H 1.48503 * 109.47182 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47055 * 299.99874 * 16 14 13 20 20 C 1.38223 * 120.06782 * 359.94404 * 13 12 11 21 21 C 1.38376 * 120.10330 * 0.02562 * 20 13 12 22 22 Br 1.89100 * 119.98412 * 180.02562 * 21 20 13 23 23 C 1.38215 * 120.03577 * 0.02562 * 21 20 13 24 24 C 1.38236 * 119.99992 * 0.26006 * 8 7 6 25 25 C 1.38233 * 119.99722 * 270.01914 * 5 2 1 26 26 H 1.09001 * 109.47498 * 300.00060 * 1 2 3 27 27 H 1.08994 * 109.47315 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46970 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46799 * 300.00083 * 3 2 1 31 31 H 1.08999 * 109.47124 * 60.00357 * 3 2 1 32 32 H 1.09004 * 109.47165 * 299.99896 * 4 2 1 33 33 H 1.09004 * 109.47094 * 59.99610 * 4 2 1 34 34 H 1.08998 * 109.47423 * 179.97438 * 4 2 1 35 35 H 1.07997 * 119.99905 * 0.02562 * 6 5 2 36 36 H 1.08004 * 119.99519 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47107 * 330.00230 * 9 8 7 38 38 H 1.09003 * 109.47007 * 210.00449 * 9 8 7 39 39 H 1.07998 * 120.01545 * 359.97438 * 12 11 10 40 40 H 1.09004 * 109.47155 * 59.97408 * 14 13 12 41 41 H 0.96704 * 113.99985 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.95057 * 180.02562 * 20 13 12 43 43 H 1.07998 * 120.03719 * 179.73126 * 23 21 20 44 44 H 1.08001 * 119.99930 * 179.72769 * 24 8 7 45 45 H 1.08004 * 120.00263 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2432 1.4910 7 6 3.1763 -2.8949 2.6199 8 6 3.4067 -2.1840 3.7828 9 6 3.9079 -2.8946 5.0136 10 8 5.3369 -2.8956 5.0142 11 6 5.9529 -3.5009 6.0635 12 6 7.3381 -3.5384 6.1284 13 6 7.9625 -4.1547 7.1958 14 6 9.4674 -4.1959 7.2661 15 8 9.9789 -4.8837 6.1227 16 14 9.9925 -5.0890 8.8144 17 1 9.4599 -6.4750 8.7912 18 1 11.4753 -5.1301 8.8834 19 1 9.4608 -4.3742 10.0026 20 6 7.2084 -4.7330 8.1995 21 6 5.8264 -4.6968 8.1378 22 35 4.7980 -5.4883 9.5132 23 6 5.1974 -4.0822 7.0716 24 6 3.1716 -0.8222 3.8184 25 6 2.7156 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2702 -0.8899 31 1 2.1207 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5364 -2.7986 0.5823 36 1 3.3559 -3.9596 2.5932 37 1 3.5438 -3.9220 5.0135 38 1 3.5444 -2.3804 5.9033 39 1 7.9280 -3.0867 5.3446 40 1 9.8583 -3.1786 7.2831 41 1 10.9435 -4.9487 6.1018 42 1 7.6984 -5.2139 9.0331 43 1 4.1188 -4.0577 7.0212 44 1 3.3474 -0.2675 4.7282 45 1 2.5349 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_17850308_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:52:48 Heat of formation + Delta-G solvation = -61.658821 kcal Electronic energy + Delta-G solvation = -24740.312450 eV Core-core repulsion = 21085.470435 eV Total energy + Delta-G solvation = -3654.842014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46936 -40.13484 -38.93605 -37.45620 -33.68575 -33.18063 -31.90632 -31.66697 -30.27166 -29.57947 -28.45925 -28.43105 -27.65380 -26.61016 -23.53065 -23.50664 -22.70840 -21.67059 -19.00581 -18.59173 -18.00740 -17.58766 -17.09337 -16.99273 -16.08714 -15.90110 -15.66398 -15.55678 -14.94043 -14.64413 -14.52725 -14.38943 -14.21791 -14.15747 -14.02576 -13.94184 -13.85282 -13.62834 -13.42071 -13.27743 -13.27304 -13.11858 -12.86419 -12.56503 -12.50799 -12.18628 -12.03627 -11.94575 -11.80821 -11.46851 -11.32975 -11.06221 -10.92253 -10.85543 -10.48141 -9.85561 -9.80156 -9.71591 -9.33257 -0.05210 0.13869 0.15218 0.52628 0.52880 1.04789 1.37886 1.45196 1.68134 1.83057 1.83630 1.87431 2.21105 2.40386 2.52486 2.99989 3.21686 3.61149 3.72058 3.75515 3.79791 3.94891 4.02912 4.09358 4.18823 4.19264 4.23289 4.37985 4.48670 4.57894 4.65176 4.68607 4.69929 4.73850 4.74188 4.74844 4.75124 4.95372 4.97656 5.06385 5.13080 5.22974 5.37820 5.42234 5.44220 5.48565 5.52071 5.59535 5.60253 6.08711 6.25819 6.49180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.089 4.089 9 C 0.098 3.902 10 O -0.301 6.301 11 C 0.141 3.859 12 C -0.105 4.105 13 C -0.029 4.029 14 C -0.081 4.081 15 O -0.542 6.542 16 Si 0.939 3.061 17 H -0.243 1.243 18 H -0.252 1.252 19 H -0.246 1.246 20 C -0.135 4.135 21 C -0.044 4.044 22 Br -0.039 7.039 23 C -0.180 4.180 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.383 0.617 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 1.966 -1.205 2.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.089 4.089 9 C 0.023 3.977 10 O -0.214 6.214 11 C 0.094 3.906 12 C -0.124 4.124 13 C -0.030 4.030 14 C -0.191 4.191 15 O -0.348 6.348 16 Si 0.761 3.239 17 H -0.166 1.166 18 H -0.176 1.176 19 H -0.169 1.169 20 C -0.155 4.155 21 C -0.124 4.124 22 Br 0.046 6.954 23 C -0.200 4.200 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.161 0.839 40 H 0.102 0.898 41 H 0.231 0.769 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.397 1.246 -0.176 1.319 hybrid contribution 0.510 0.244 -0.219 0.607 sum 0.114 1.489 -0.395 1.545 Atomic orbital electron populations 1.26123 1.20425 1.04593 1.04517 0.78182 0.66846 0.66131 0.63678 1.26135 1.06507 1.18534 1.04576 1.26138 1.06513 1.08052 1.15065 1.27491 1.02941 0.99514 1.10231 1.21085 0.97464 0.94676 0.97715 1.21158 0.98683 0.99940 0.92569 1.19414 1.01023 0.94185 0.94312 1.21710 0.78440 1.00633 0.96885 1.86211 1.21119 1.72611 1.41482 1.18876 0.92074 0.92747 0.86896 1.20370 0.91082 1.01697 0.99269 1.18986 0.93670 0.96536 0.93844 1.24709 0.92832 1.01659 0.99935 1.86507 1.26521 1.78447 1.43337 0.85832 0.80630 0.81318 0.76153 1.16635 1.17587 1.16929 1.20820 0.92184 1.02204 1.00266 1.21379 0.93924 1.01764 0.95301 1.96797 1.70410 1.80933 1.47212 1.21213 1.00745 1.03215 0.94847 1.21148 0.98777 0.93515 0.98942 1.21080 0.97514 0.99763 0.92605 0.91163 0.91002 0.91161 0.91022 0.90924 0.91172 0.91161 0.90930 0.91018 0.85844 0.86074 0.90794 0.90789 0.83949 0.89844 0.76893 0.85042 0.84125 0.86094 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.73 8.65 101.05 0.87 1.60 16 2 Si 1.06 -2.72 12.32 -169.99 -2.09 -4.81 16 3 C -0.45 0.82 8.53 101.05 0.86 1.68 16 4 C -0.45 0.80 8.53 101.05 0.86 1.66 16 5 C -0.36 0.07 4.59 -39.58 -0.18 -0.11 16 6 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 7 C -0.11 -0.12 9.70 -39.58 -0.38 -0.50 16 8 C -0.09 -0.12 5.51 -104.62 -0.58 -0.69 16 9 C 0.10 0.05 4.87 36.01 0.18 0.22 16 10 O -0.30 -0.77 10.12 -19.43 -0.20 -0.96 16 11 C 0.14 0.33 6.69 -39.22 -0.26 0.07 16 12 C -0.11 -0.23 9.55 -39.43 -0.38 -0.61 16 13 C -0.03 -0.05 5.42 -104.65 -0.57 -0.62 16 14 C -0.08 0.04 2.81 36.01 0.10 0.14 16 15 O -0.54 0.04 12.74 -35.23 -0.45 -0.41 16 16 Si 0.94 -0.50 25.07 -169.99 -4.26 -4.77 16 17 H -0.24 -0.25 7.11 56.52 0.40 0.16 16 18 H -0.25 0.17 7.11 56.52 0.40 0.58 16 19 H -0.25 0.00 7.11 56.52 0.40 0.40 16 20 C -0.13 -0.28 8.41 -39.54 -0.33 -0.61 16 21 C -0.04 -0.10 6.22 -39.54 -0.25 -0.34 16 22 Br -0.04 -0.07 33.70 -68.01 -2.29 -2.36 16 23 C -0.18 -0.30 8.78 -39.40 -0.35 -0.65 16 24 C -0.11 -0.10 9.70 -39.58 -0.38 -0.49 16 25 C -0.09 -0.03 9.29 -39.59 -0.37 -0.39 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.53 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 36 H 0.12 -0.01 8.06 -52.48 -0.42 -0.44 16 37 H 0.07 -0.05 7.60 -51.93 -0.39 -0.44 16 38 H 0.07 -0.06 7.61 -51.93 -0.39 -0.46 16 39 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 41 H 0.38 -1.75 8.74 45.56 0.40 -1.36 16 42 H 0.13 0.15 4.87 -52.49 -0.26 -0.11 16 43 H 0.14 0.01 6.30 -52.49 -0.33 -0.32 16 44 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 45 H 0.12 -0.20 7.43 -52.48 -0.39 -0.59 16 LS Contribution 395.05 15.07 5.95 5.95 Total: 0.00 -5.84 395.05 -10.79 -16.63 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -5.93 Total: -9.22 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.52 Total: -0.05 kcal Atomic # 8 Polarization: -0.73 SS G_CDS: -0.65 Total: -1.38 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: -6.36 Total: -9.58 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -5.84 -10.79 -16.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.028 kcal (2) G-P(sol) polarization free energy of solvation -5.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds