Wall clock time and date at job start Mon Mar 8 2021 07:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86304 * 109.47195 * 2 1 4 4 C 1.86299 * 109.47275 * 239.99980 * 2 1 3 5 5 C 1.86808 * 109.47086 * 120.00100 * 2 1 3 6 6 C 1.38236 * 119.99926 * 90.00060 * 5 2 1 7 7 C 1.38238 * 119.99523 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00126 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99645 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.46921 * 90.00153 * 9 8 7 11 11 C 1.35901 * 116.99894 * 179.97438 * 10 9 8 12 12 C 1.38718 * 120.05205 * 180.02562 * 11 10 9 13 13 C 1.38169 * 119.96275 * 180.02562 * 12 11 10 14 14 C 1.50706 * 119.96610 * 179.97438 * 13 12 11 15 15 O 1.42897 * 109.46933 * 299.97628 * 14 13 12 16 16 Si 1.86298 * 109.47131 * 179.97438 * 14 13 12 17 17 H 1.48498 * 109.47112 * 60.00141 * 16 14 13 18 18 H 1.48503 * 109.47182 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47055 * 299.99874 * 16 14 13 20 20 C 1.38223 * 120.06782 * 359.94404 * 13 12 11 21 21 C 1.38376 * 120.10330 * 0.02562 * 20 13 12 22 22 Br 1.89100 * 119.98412 * 180.02562 * 21 20 13 23 23 C 1.38215 * 120.03577 * 0.02562 * 21 20 13 24 24 C 1.38236 * 119.99992 * 0.26006 * 8 7 6 25 25 C 1.38233 * 119.99722 * 270.01914 * 5 2 1 26 26 H 1.09001 * 109.47498 * 300.00060 * 1 2 3 27 27 H 1.08994 * 109.47315 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46970 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46799 * 300.00083 * 3 2 1 31 31 H 1.08999 * 109.47124 * 60.00357 * 3 2 1 32 32 H 1.09004 * 109.47165 * 299.99896 * 4 2 1 33 33 H 1.09004 * 109.47094 * 59.99610 * 4 2 1 34 34 H 1.08998 * 109.47423 * 179.97438 * 4 2 1 35 35 H 1.07997 * 119.99905 * 0.02562 * 6 5 2 36 36 H 1.08004 * 119.99519 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47107 * 330.00230 * 9 8 7 38 38 H 1.09003 * 109.47007 * 210.00449 * 9 8 7 39 39 H 1.07998 * 120.01545 * 359.97438 * 12 11 10 40 40 H 1.09004 * 109.47155 * 59.97408 * 14 13 12 41 41 H 0.96704 * 113.99985 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.95057 * 180.02562 * 20 13 12 43 43 H 1.07998 * 120.03719 * 179.73126 * 23 21 20 44 44 H 1.08001 * 119.99930 * 179.72769 * 24 8 7 45 45 H 1.08004 * 120.00263 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2432 1.4910 7 6 3.1763 -2.8949 2.6199 8 6 3.4067 -2.1840 3.7828 9 6 3.9079 -2.8946 5.0136 10 8 5.3369 -2.8956 5.0142 11 6 5.9529 -3.5009 6.0635 12 6 7.3381 -3.5384 6.1284 13 6 7.9625 -4.1547 7.1958 14 6 9.4674 -4.1959 7.2661 15 8 9.9789 -4.8837 6.1227 16 14 9.9925 -5.0890 8.8144 17 1 9.4599 -6.4750 8.7912 18 1 11.4753 -5.1301 8.8834 19 1 9.4608 -4.3742 10.0026 20 6 7.2084 -4.7330 8.1995 21 6 5.8264 -4.6968 8.1378 22 35 4.7980 -5.4883 9.5132 23 6 5.1974 -4.0822 7.0716 24 6 3.1716 -0.8222 3.8184 25 6 2.7156 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2702 -0.8899 31 1 2.1207 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5364 -2.7986 0.5823 36 1 3.3559 -3.9596 2.5932 37 1 3.5438 -3.9220 5.0135 38 1 3.5444 -2.3804 5.9033 39 1 7.9280 -3.0867 5.3446 40 1 9.8583 -3.1786 7.2831 41 1 10.9435 -4.9487 6.1018 42 1 7.6984 -5.2139 9.0331 43 1 4.1188 -4.0577 7.0212 44 1 3.3474 -0.2675 4.7282 45 1 2.5349 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_17850308_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:52:47 Heat of formation + Delta-G solvation = -51.525933 kcal Electronic energy + Delta-G solvation = -24739.873055 eV Core-core repulsion = 21085.470435 eV Total energy + Delta-G solvation = -3654.402619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56189 -40.14123 -38.98133 -37.44308 -33.77599 -33.20023 -31.88990 -31.75288 -30.38293 -29.42696 -28.29251 -28.26835 -27.67744 -26.61549 -23.64903 -23.49599 -22.74171 -21.70041 -19.08409 -18.54648 -18.03336 -17.66693 -17.14506 -17.01079 -16.06554 -15.93726 -15.68266 -15.57631 -14.95784 -14.73112 -14.52297 -14.34857 -14.09343 -14.08249 -14.05072 -13.86393 -13.72683 -13.63276 -13.38796 -13.14092 -13.11333 -12.96544 -12.84751 -12.61439 -12.51669 -12.24085 -12.03251 -11.92654 -11.82810 -11.55894 -11.46388 -10.92515 -10.78156 -10.75639 -10.43834 -9.94076 -9.81498 -9.70199 -9.46151 -0.16808 0.02750 0.13810 0.38915 0.51350 1.09347 1.42309 1.47682 1.83281 1.87138 1.96141 2.02692 2.24345 2.30095 2.66784 2.99605 3.24637 3.62604 3.68928 3.73849 3.77904 3.87424 4.00417 4.10695 4.12511 4.21644 4.26004 4.37757 4.52585 4.53857 4.70409 4.83550 4.84886 4.85052 4.88907 4.89572 4.90066 4.90953 4.96075 4.99086 5.12124 5.15233 5.33230 5.39094 5.55864 5.58823 5.59506 5.68181 5.70933 6.11026 6.16788 6.78991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.104 4.104 9 C 0.096 3.904 10 O -0.314 6.314 11 C 0.134 3.866 12 C -0.115 4.115 13 C -0.035 4.035 14 C -0.079 4.079 15 O -0.560 6.560 16 Si 0.965 3.035 17 H -0.270 1.270 18 H -0.245 1.245 19 H -0.255 1.255 20 C -0.146 4.146 21 C -0.053 4.053 22 Br -0.039 7.039 23 C -0.181 4.181 24 C -0.121 4.121 25 C -0.103 4.103 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.129 0.871 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 2.525 -1.628 3.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.104 4.104 9 C 0.022 3.978 10 O -0.228 6.228 11 C 0.087 3.913 12 C -0.134 4.134 13 C -0.036 4.036 14 C -0.189 4.189 15 O -0.369 6.369 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.169 1.169 19 H -0.179 1.179 20 C -0.166 4.166 21 C -0.133 4.133 22 Br 0.047 6.953 23 C -0.201 4.201 24 C -0.139 4.139 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.163 0.837 40 H 0.125 0.875 41 H 0.253 0.747 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.147 0.853 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.260 1.803 -0.590 1.915 hybrid contribution 0.468 0.056 -0.103 0.483 sum 0.208 1.859 -0.693 1.995 Atomic orbital electron populations 1.26276 1.21472 1.04485 1.04616 0.77163 0.65230 0.64599 0.61539 1.26278 1.06374 1.19388 1.04910 1.26291 1.06368 1.08509 1.15858 1.28072 1.02297 0.99570 1.11232 1.21394 0.97357 0.95251 0.98150 1.21386 0.99168 1.00477 0.92989 1.19581 1.01517 0.94574 0.94729 1.21825 0.77550 1.01274 0.97153 1.86188 1.22199 1.72737 1.41703 1.18988 0.92303 0.92935 0.87045 1.20516 0.91245 1.02049 0.99622 1.19259 0.94995 0.95919 0.93400 1.24728 0.91507 1.02979 0.99714 1.86459 1.28471 1.78585 1.43405 0.85465 0.80584 0.79389 0.75664 1.19442 1.16860 1.17874 1.20990 0.92364 1.02500 1.00718 1.21506 0.94165 1.02068 0.95571 1.96784 1.70358 1.80952 1.47190 1.21333 1.01406 1.02883 0.94492 1.21388 0.99103 0.93674 0.99716 1.21402 0.97328 1.00787 0.92595 0.91340 0.90641 0.91392 0.91379 0.90616 0.90864 0.90932 0.90619 0.91401 0.84290 0.85538 0.89963 0.89697 0.83693 0.87519 0.74707 0.84630 0.82883 0.85315 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.74 8.65 113.37 0.98 2.72 16 2 Si 1.13 -6.39 12.32 68.60 0.85 -5.54 16 3 C -0.46 1.96 8.53 113.37 0.97 2.93 16 4 C -0.46 1.87 8.53 113.37 0.97 2.83 16 5 C -0.37 0.15 4.59 22.27 0.10 0.26 16 6 C -0.10 -0.11 9.29 22.27 0.21 0.10 16 7 C -0.12 -0.37 9.70 22.27 0.22 -0.15 16 8 C -0.10 -0.36 5.51 -19.87 -0.11 -0.47 16 9 C 0.10 0.16 4.87 71.24 0.35 0.51 16 10 O -0.31 -1.87 10.12 -92.43 -0.94 -2.80 16 11 C 0.13 0.72 6.69 22.51 0.15 0.87 16 12 C -0.12 -0.58 9.55 22.37 0.21 -0.36 16 13 C -0.03 -0.13 5.42 -19.88 -0.11 -0.24 16 14 C -0.08 0.10 2.81 71.24 0.20 0.30 16 15 O -0.56 0.28 12.74 -148.98 -1.90 -1.62 16 16 Si 0.97 -1.02 25.07 68.60 1.72 0.70 16 17 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 18 H -0.25 0.55 7.11 99.48 0.71 1.26 16 19 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 20 C -0.15 -0.70 8.41 22.30 0.19 -0.51 16 21 C -0.05 -0.27 6.22 22.30 0.14 -0.13 16 22 Br -0.04 -0.16 33.70 -20.37 -0.69 -0.84 16 23 C -0.18 -0.71 8.78 22.38 0.20 -0.51 16 24 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 25 C -0.10 -0.07 9.29 22.27 0.21 0.14 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 32 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 33 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 35 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 36 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.08 -0.05 7.60 -2.39 -0.02 -0.07 16 38 H 0.08 -0.10 7.61 -2.39 -0.02 -0.11 16 39 H 0.15 0.55 8.06 -2.91 -0.02 0.52 16 40 H 0.11 -0.64 7.96 -2.39 -0.02 -0.66 16 41 H 0.40 -3.97 8.74 -74.05 -0.65 -4.62 16 42 H 0.14 0.43 4.87 -2.91 -0.01 0.41 16 43 H 0.15 0.07 6.30 -2.91 -0.02 0.05 16 44 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 45 H 0.14 -0.51 7.43 -2.91 -0.02 -0.53 16 Total: 0.00 -13.53 395.05 5.23 -8.30 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: 1.10 Total: -6.37 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.08 Total: 8.18 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: -2.83 Total: -4.43 kcal Atomic # 14 Polarization: -7.41 SS G_CDS: 2.57 Total: -4.84 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -0.69 Total: -0.84 kcal Total: -13.53 5.23 -8.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_17850308_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.224 kcal (2) G-P(sol) polarization free energy of solvation -13.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds