Wall clock time and date at job start Mon Mar 8 2021 08:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86297 * 109.47215 * 2 1 4 4 C 1.50700 * 109.47147 * 120.00387 * 2 1 3 5 5 C 1.38185 * 119.99875 * 254.97954 * 4 2 1 6 6 C 1.38255 * 120.10251 * 180.02562 * 5 4 2 7 7 C 1.38362 * 120.11346 * 359.97241 * 6 5 4 8 8 Cl 1.73598 * 119.99927 * 180.02562 * 7 6 5 9 9 C 1.38445 * 120.00634 * 359.79082 * 7 6 5 10 10 F 1.35105 * 120.05287 * 180.24772 * 9 7 6 11 11 C 1.38678 * 120.00641 * 74.99696 * 4 2 1 12 12 O 1.35952 * 120.05720 * 359.95412 * 11 4 2 13 13 C 1.42903 * 116.99815 * 90.00071 * 12 11 4 14 14 C 1.53002 * 109.47260 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47067 * 305.00171 * 14 13 12 16 16 C 1.53005 * 109.46982 * 64.99823 * 14 13 12 17 17 C 1.52999 * 109.47159 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47317 * 300.00546 * 17 16 14 19 19 H 1.09002 * 109.47153 * 299.99641 * 18 17 16 20 20 O 1.42896 * 109.46906 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47060 * 59.99960 * 18 17 16 22 22 C 1.52997 * 109.47143 * 185.00153 * 14 13 12 23 23 H 0.96702 * 114.00051 * 300.00074 * 1 2 3 24 24 H 1.09005 * 109.47195 * 240.00040 * 2 1 3 25 25 H 1.48507 * 109.99816 * 178.67963 * 3 2 1 26 26 H 1.48498 * 110.00005 * 299.99791 * 3 2 1 27 27 H 1.08000 * 119.94790 * 359.97438 * 5 4 2 28 28 H 1.07995 * 119.94327 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46851 * 60.00049 * 13 12 11 30 30 H 1.09000 * 109.47185 * 300.00111 * 13 12 11 31 31 H 1.09000 * 109.47360 * 300.00293 * 16 14 13 32 32 H 1.09002 * 109.46935 * 60.00267 * 16 14 13 33 33 H 1.08996 * 109.46929 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.46716 * 60.00455 * 17 16 14 35 35 H 0.96699 * 114.00604 * 59.99725 * 20 18 17 36 36 H 1.08992 * 109.47399 * 59.99823 * 21 18 17 37 37 H 1.09004 * 109.46724 * 180.02562 * 21 18 17 38 38 H 1.08993 * 109.47194 * 59.99677 * 22 14 13 39 39 H 1.09002 * 109.46695 * 299.99691 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4540 0.0164 2.2830 6 6 2.9160 -0.6332 3.4126 7 6 2.8559 -2.0132 3.4931 8 17 3.4362 -2.8258 4.9132 9 6 2.3286 -2.7457 2.4433 10 9 2.2649 -4.0929 2.5231 11 6 1.8694 -2.0938 1.3063 12 8 1.3548 -2.8102 0.2718 13 6 2.2684 -3.2325 -0.7427 14 6 1.5118 -4.0186 -1.8153 15 1 0.9700 -4.8412 -1.3485 16 6 0.5211 -3.0919 -2.5231 17 6 -0.2350 -3.8778 -3.5961 18 6 0.7598 -4.4354 -4.6160 19 1 1.3016 -3.6126 -5.0825 20 8 0.0535 -5.1698 -5.6179 21 6 1.7503 -5.3621 -3.9082 22 6 2.5063 -4.5766 -2.8353 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7702 0.0322 26 1 1.5615 2.4678 -1.2085 27 1 2.5025 1.0937 2.2227 28 1 3.3244 -0.0626 4.2335 29 1 3.0353 -3.8677 -0.2993 30 1 2.7374 -2.3591 -1.1958 31 1 -0.1873 -2.6943 -1.7964 32 1 1.0630 -2.2693 -2.9898 33 1 -0.9411 -3.2177 -4.1000 34 1 -0.7768 -4.7006 -3.1297 35 1 -0.5934 -4.6443 -6.1082 36 1 1.2086 -6.1848 -3.4418 37 1 2.4594 -5.7589 -4.6348 38 1 3.2120 -5.2367 -2.3311 39 1 3.0481 -3.7540 -3.3021 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18323488_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:42:34 Heat of formation + Delta-G solvation = -152.006730 kcal Electronic energy + Delta-G solvation = -25224.711601 eV Core-core repulsion = 21267.181374 eV Total energy + Delta-G solvation = -3957.530227 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.091 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.18570 -41.45741 -40.21447 -38.82007 -37.97627 -37.26581 -36.68910 -32.50752 -32.24921 -31.88310 -30.76861 -27.18922 -26.35823 -24.07334 -23.76361 -22.99061 -22.40149 -20.95624 -19.47197 -18.77863 -18.42900 -18.24032 -17.54716 -17.34928 -16.72998 -16.56749 -16.30410 -16.12156 -15.58836 -15.52731 -15.45949 -14.92692 -14.67875 -14.52102 -14.17833 -14.07820 -13.89527 -13.54490 -13.38028 -13.31387 -13.24726 -12.57747 -12.49023 -12.29210 -12.20264 -12.10648 -11.98942 -11.75868 -11.65866 -11.30325 -11.11077 -10.76330 -10.45381 -9.94507 -9.93243 -5.01519 -0.40719 -0.30606 0.78782 1.23671 1.66062 1.91591 1.98166 2.39244 2.81925 3.17401 3.36512 3.51157 3.57759 3.63183 3.67774 3.72350 3.84123 3.97871 4.01423 4.09586 4.17086 4.24248 4.28351 4.39090 4.41627 4.43388 4.47384 4.56256 4.66593 4.76285 4.81871 4.91152 4.96410 4.99072 5.02474 5.08462 5.12316 5.23452 5.31172 5.37195 6.19634 6.77274 6.81319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.074 4.074 3 Si 0.788 3.212 4 C -0.110 4.110 5 C -0.085 4.085 6 C -0.073 4.073 7 C -0.069 4.069 8 Cl -0.047 7.047 9 C 0.063 3.937 10 F -0.136 7.136 11 C 0.085 3.915 12 O -0.328 6.328 13 C 0.068 3.932 14 C -0.082 4.082 15 H 0.070 0.930 16 C -0.102 4.102 17 C -0.146 4.146 18 C 0.103 3.897 19 H 0.064 0.936 20 O -0.589 6.589 21 C -0.112 4.112 22 C -0.104 4.104 23 H 0.395 0.605 24 H 0.100 0.900 25 H -0.274 1.274 26 H -0.297 1.297 27 H 0.187 0.813 28 H 0.183 0.817 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.393 0.607 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 7.525 1.360 7.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.183 4.183 3 Si 0.692 3.308 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.091 4.091 7 C -0.096 4.096 8 Cl -0.018 7.018 9 C 0.042 3.958 10 F -0.114 7.114 11 C 0.040 3.960 12 O -0.245 6.245 13 C -0.006 4.006 14 C -0.101 4.101 15 H 0.089 0.911 16 C -0.140 4.140 17 C -0.184 4.184 18 C 0.044 3.956 19 H 0.082 0.918 20 O -0.398 6.398 21 C -0.150 4.150 22 C -0.141 4.141 23 H 0.245 0.755 24 H 0.118 0.882 25 H -0.200 1.200 26 H -0.225 1.225 27 H 0.203 0.797 28 H 0.200 0.800 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.210 7.108 0.708 7.477 hybrid contribution -0.235 -1.121 -0.191 1.161 sum 1.976 5.987 0.517 6.326 Atomic orbital electron populations 1.86550 1.16488 1.82189 1.50108 1.25345 0.85989 1.11143 0.95797 0.93778 0.78078 0.73386 0.85582 1.20927 0.99400 0.91890 0.98934 1.21326 0.96350 1.01606 0.90943 1.21419 0.97608 0.90022 1.00049 1.21186 1.04347 0.94560 0.89551 1.98421 1.86811 1.79562 1.37020 1.18184 1.03694 0.77521 0.96388 1.91510 1.94294 1.29134 1.96466 1.18501 0.99096 0.90570 0.87827 1.86115 1.34934 1.71437 1.32044 1.22993 0.91548 0.98437 0.87612 1.21164 0.96948 0.97907 0.94055 0.91144 1.21413 0.97954 0.97432 0.97192 1.22214 0.98581 1.00159 0.97453 1.21887 0.92291 0.93614 0.87791 0.91816 1.86477 1.58171 1.42635 1.52486 1.21443 0.97734 0.98180 0.97635 1.21429 0.97109 1.00368 0.95213 0.75500 0.88240 1.20021 1.22494 0.79669 0.79959 0.92680 0.91541 0.91746 0.91324 0.90679 0.92293 0.75704 0.92145 0.90922 0.90293 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.80 12.88 -148.98 -1.92 -1.12 16 2 C -0.07 0.23 2.38 71.24 0.17 0.40 16 3 Si 0.79 -5.52 29.92 68.60 2.05 -3.46 16 4 C -0.11 0.25 5.27 -19.77 -0.10 0.14 16 5 C -0.08 0.65 8.66 22.26 0.19 0.84 16 6 C -0.07 0.41 9.83 22.30 0.22 0.63 16 7 C -0.07 -0.09 6.32 22.35 0.14 0.05 16 8 Cl -0.05 -0.13 28.61 -2.72 -0.08 -0.21 16 9 C 0.06 0.35 7.28 22.47 0.16 0.51 16 10 F -0.14 -1.38 16.68 44.97 0.75 -0.63 16 11 C 0.09 0.33 5.70 22.53 0.13 0.46 16 12 O -0.33 -2.03 8.83 -93.00 -0.82 -2.85 16 13 C 0.07 0.13 5.21 71.98 0.38 0.51 16 14 C -0.08 -0.11 2.43 -10.79 -0.03 -0.13 16 15 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 16 C -0.10 -0.13 5.10 30.60 0.16 0.03 16 17 C -0.15 -0.15 5.54 30.59 0.17 0.02 16 18 C 0.10 0.13 3.47 30.59 0.11 0.24 16 19 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 20 O -0.59 -2.18 13.32 -148.98 -1.98 -4.17 16 21 C -0.11 -0.18 5.57 30.58 0.17 -0.01 16 22 C -0.10 0.12 5.20 30.58 0.16 0.28 16 23 H 0.40 -3.95 8.70 -74.06 -0.64 -4.60 16 24 H 0.10 -0.09 6.55 -2.38 -0.02 -0.10 16 25 H -0.27 0.88 7.11 99.48 0.71 1.58 16 26 H -0.30 -0.36 7.11 99.48 0.71 0.35 16 27 H 0.19 -2.86 5.12 -2.91 -0.01 -2.87 16 28 H 0.18 -2.13 8.06 -2.91 -0.02 -2.15 16 29 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 -0.05 7.10 -2.39 -0.02 -0.07 16 31 H 0.06 0.31 7.82 -2.39 -0.02 0.30 16 32 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.39 -1.64 9.08 -74.06 -0.67 -2.32 16 36 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 Total: 0.00 -17.89 336.27 -0.17 -18.06 By element: Atomic # 1 Polarization: -9.42 SS G_CDS: -0.19 Total: -9.61 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 2.02 Total: 3.98 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -4.72 Total: -8.13 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.75 Total: -0.63 kcal Atomic # 14 Polarization: -5.52 SS G_CDS: 2.05 Total: -3.46 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -17.89 -0.17 -18.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18323488_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.946 kcal (2) G-P(sol) polarization free energy of solvation -17.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds