Wall clock time and date at job start Mon Mar 8 2021 10:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36091 * 116.99877 * 2 1 4 4 C 1.38960 * 120.09137 * 89.99799 * 3 2 1 5 5 O 1.35995 * 120.04487 * 0.02562 * 4 3 2 6 6 C 1.38688 * 119.90928 * 179.74512 * 4 3 2 7 7 C 1.38200 * 120.08937 * 0.25173 * 6 4 3 8 8 C 1.50703 * 119.91033 * 180.02562 * 7 6 4 9 9 O 1.42899 * 109.47008 * 119.99998 * 8 7 6 10 10 Si 1.86299 * 109.46929 * 0.02562 * 8 7 6 11 11 H 1.48496 * 109.47307 * 59.99945 * 10 8 7 12 12 H 1.48505 * 109.47134 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46979 * 299.99445 * 10 8 7 14 14 C 1.38250 * 120.18379 * 0.02562 * 7 6 4 15 15 C 1.38647 * 120.08448 * 359.97438 * 14 7 6 16 16 O 1.35997 * 120.04250 * 179.97438 * 15 14 7 17 17 C 1.42902 * 117.00108 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.46930 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.47360 * 65.00385 * 18 17 16 20 20 Si 1.63101 * 114.00537 * 179.97438 * 19 18 17 21 21 C 1.86305 * 109.46799 * 299.99804 * 20 19 18 22 22 C 1.86299 * 109.47104 * 59.99245 * 20 19 18 23 23 C 1.86301 * 109.47306 * 179.97438 * 20 19 18 24 24 C 1.52997 * 109.47014 * 59.99998 * 23 20 19 25 25 C 1.52999 * 109.47034 * 179.97438 * 23 20 19 26 26 C 1.52994 * 109.46993 * 299.99812 * 23 20 19 27 27 H 1.09003 * 109.47404 * 300.00210 * 1 2 3 28 28 H 1.09006 * 109.47137 * 60.00464 * 1 2 3 29 29 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 30 30 H 0.96700 * 114.00111 * 269.72567 * 5 4 3 31 31 H 1.08002 * 119.95283 * 180.22961 * 6 4 3 32 32 H 1.08996 * 109.47504 * 239.99925 * 8 7 6 33 33 H 0.96696 * 114.00531 * 299.99737 * 9 8 7 34 34 H 1.07994 * 119.95771 * 179.97438 * 14 7 6 35 35 H 1.08995 * 109.47167 * 299.99600 * 17 16 15 36 36 H 1.08999 * 109.46799 * 59.99601 * 17 16 15 37 37 H 1.09007 * 109.46957 * 184.99757 * 18 17 16 38 38 H 1.08998 * 109.47626 * 305.00008 * 18 17 16 39 39 H 1.08994 * 109.47209 * 59.99662 * 21 20 19 40 40 H 1.09000 * 109.46815 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.46612 * 299.99922 * 21 20 19 42 42 H 1.09005 * 109.47234 * 60.00662 * 22 20 19 43 43 H 1.09000 * 109.47037 * 179.97438 * 22 20 19 44 44 H 1.08994 * 109.47268 * 300.00562 * 22 20 19 45 45 H 1.08996 * 109.47515 * 59.99590 * 24 23 20 46 46 H 1.09003 * 109.46933 * 180.02562 * 24 23 20 47 47 H 1.09004 * 109.46871 * 299.99424 * 24 23 20 48 48 H 1.09001 * 109.47091 * 59.99432 * 25 23 20 49 49 H 1.08994 * 109.47245 * 179.97438 * 25 23 20 50 50 H 1.09005 * 109.47299 * 299.99746 * 25 23 20 51 51 H 1.09004 * 109.47630 * 60.00124 * 26 23 20 52 52 H 1.09003 * 109.47077 * 180.02562 * 26 23 20 53 53 H 1.09008 * 109.47426 * 299.99785 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3631 1.8334 1.2023 5 8 2.0561 1.2298 2.3817 6 6 2.9974 3.0667 1.1979 7 6 3.3103 3.6806 0.0000 8 6 4.0002 5.0205 -0.0001 9 8 5.2541 4.9106 -0.6765 10 14 4.2888 5.5704 1.7563 11 1 5.1420 4.5744 2.4530 12 1 4.9692 6.8904 1.7563 13 1 2.9859 5.6845 2.4597 14 6 2.9923 3.0690 -1.1984 15 6 2.3581 1.8361 -1.2027 16 8 2.0451 1.2355 -2.3820 17 6 2.3997 1.9315 -3.5787 18 6 1.9719 1.1066 -4.7941 19 8 0.5468 1.0057 -4.8237 20 14 -0.0315 0.1445 -6.0824 21 6 0.4960 0.9475 -7.6786 22 6 0.6412 -1.5912 -6.0085 23 6 -1.8918 0.0932 -5.9974 24 6 -2.4446 1.5185 -6.0578 25 6 -2.4342 -0.7141 -7.1785 26 6 -2.3244 -0.5665 -4.6865 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.1817 1.4592 2.7251 31 1 3.2469 3.5481 2.1320 32 1 3.3742 5.7515 -0.5119 33 1 5.8634 4.2761 -0.2750 34 1 3.2381 3.5522 -2.1324 35 1 1.8962 2.8979 -3.5996 36 1 3.4788 2.0833 -3.6045 37 1 2.3205 1.5937 -5.7048 38 1 2.4054 0.1088 -4.7270 39 1 1.5844 0.9772 -7.7281 40 1 0.1092 0.3722 -8.5198 41 1 0.1024 1.9631 -7.7218 42 1 0.3326 -2.0611 -5.0746 43 1 0.2544 -2.1669 -6.8494 44 1 1.7296 -1.5615 -6.0580 45 1 -2.1363 1.9886 -6.9916 46 1 -3.5330 1.4885 -6.0076 47 1 -2.0582 2.0940 -5.2165 48 1 -2.0403 -1.7296 -7.1359 49 1 -3.5226 -0.7445 -7.1285 50 1 -2.1260 -0.2437 -8.1122 51 1 -1.9380 0.0090 -3.8452 52 1 -3.4129 -0.5969 -4.6370 53 1 -1.9306 -1.5820 -4.6435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_18340330_10902662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:33 Heat of formation + Delta-G solvation = -220.665593 kcal Electronic energy + Delta-G solvation = -31582.192557 eV Core-core repulsion = 27350.518623 eV Total energy + Delta-G solvation = -4231.673934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 358.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80456 -39.80595 -38.94906 -38.17377 -37.75130 -36.86823 -36.44314 -32.05923 -30.77825 -30.29316 -29.40184 -29.12103 -28.18910 -27.88986 -27.41406 -26.17417 -24.69821 -22.95701 -22.57083 -20.45864 -19.87136 -18.60710 -18.46969 -18.28787 -18.11898 -17.45002 -16.75521 -16.40746 -16.22260 -16.16091 -15.97736 -15.81881 -15.54943 -15.51160 -15.31085 -14.93713 -14.89242 -14.74707 -14.41908 -14.02091 -13.67456 -13.54618 -13.44439 -13.29878 -13.27425 -13.06263 -12.97758 -12.95453 -12.81985 -12.67061 -12.57645 -12.43384 -12.22149 -12.03993 -11.89525 -11.84627 -11.76615 -11.68758 -11.58122 -11.34763 -10.77438 -10.52515 -10.40893 -10.10646 -9.65078 -9.21809 -0.06528 0.17859 1.08021 1.38855 1.40658 1.47311 1.69816 1.86716 1.99060 2.02803 2.26489 2.39237 2.82950 3.09996 3.33707 3.59092 3.82180 3.92848 3.95115 3.98996 4.08590 4.09022 4.14969 4.19858 4.25011 4.36015 4.42835 4.44336 4.47592 4.53245 4.55137 4.62826 4.66569 4.70687 4.73000 4.78143 4.80270 4.82775 4.92416 4.96863 5.07174 5.07797 5.10036 5.14230 5.24989 5.28127 5.32086 5.38818 5.38876 5.45893 5.50060 5.57890 6.10123 6.40867 6.46126 6.77002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.315 6.315 3 C 0.041 3.959 4 C 0.135 3.865 5 O -0.482 6.482 6 C -0.179 4.179 7 C -0.069 4.069 8 C -0.081 4.081 9 O -0.537 6.537 10 Si 0.950 3.050 11 H -0.249 1.249 12 H -0.253 1.253 13 H -0.250 1.250 14 C -0.181 4.181 15 C 0.133 3.867 16 O -0.289 6.289 17 C 0.053 3.947 18 C 0.087 3.913 19 O -0.619 6.619 20 Si 1.286 2.714 21 C -0.512 4.512 22 C -0.511 4.511 23 C -0.374 4.374 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.133 4.133 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.392 0.608 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.379 0.621 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.052 0.948 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 1.995 -1.387 2.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.231 6.231 3 C -0.004 4.004 4 C 0.089 3.911 5 O -0.292 6.292 6 C -0.198 4.198 7 C -0.069 4.069 8 C -0.191 4.191 9 O -0.342 6.342 10 Si 0.773 3.227 11 H -0.172 1.172 12 H -0.176 1.176 13 H -0.174 1.174 14 C -0.200 4.200 15 C 0.086 3.914 16 O -0.202 6.202 17 C -0.022 4.022 18 C 0.012 3.988 19 O -0.579 6.579 20 Si 1.418 2.582 21 C -0.614 4.614 22 C -0.613 4.613 23 C -0.417 4.417 24 C -0.191 4.191 25 C -0.194 4.194 26 C -0.191 4.191 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.249 0.751 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.226 0.774 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.072 0.928 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.808 2.236 -0.791 2.505 hybrid contribution -0.535 -0.399 -0.555 0.867 sum -1.343 1.837 -1.345 2.644 Atomic orbital electron populations 1.23006 0.79080 1.03515 1.00406 1.86194 1.19787 1.23081 1.94010 1.18272 1.03399 0.89339 0.89404 1.18258 0.98020 0.90194 0.84631 1.84901 1.39595 1.70187 1.34504 1.21120 1.04962 0.95408 0.98264 1.19974 0.97912 0.96778 0.92265 1.25008 0.87152 0.96242 1.10741 1.86510 1.24941 1.65880 1.56844 0.85663 0.81754 0.81000 0.74328 1.17220 1.17645 1.17356 1.21043 1.03999 0.95386 0.99525 1.19252 0.95036 0.91221 0.85857 1.86244 1.76840 1.45642 1.11447 1.23101 1.00001 0.96537 0.82559 1.22082 0.80031 1.00627 0.96103 1.85395 1.22743 1.81052 1.68671 0.76734 0.64446 0.61127 0.55923 1.27047 1.05761 1.08528 1.20046 1.27029 1.06764 1.22582 1.04903 1.25765 1.19684 0.98172 0.98119 1.21509 1.01114 0.94807 1.01645 1.21556 1.01523 0.99427 0.96883 1.21503 1.01386 1.00128 0.96035 0.94138 0.92995 0.88633 0.75144 0.84931 0.86012 0.77388 0.84015 0.90567 0.90318 0.90308 0.91311 0.91474 0.90630 0.90856 0.90748 0.90777 0.91482 0.92712 0.92806 0.92241 0.92496 0.92500 0.92528 0.92186 0.92847 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 11.13 101.05 1.13 1.16 16 2 O -0.31 -1.35 9.99 -45.29 -0.45 -1.81 16 3 C 0.04 0.14 5.75 -39.03 -0.22 -0.08 16 4 C 0.13 0.32 6.71 -39.15 -0.26 0.06 16 5 O -0.48 -0.80 13.29 -34.32 -0.46 -1.25 16 6 C -0.18 -0.19 8.60 -39.43 -0.34 -0.53 16 7 C -0.07 -0.03 5.39 -104.63 -0.56 -0.59 16 8 C -0.08 0.08 2.82 36.01 0.10 0.19 16 9 O -0.54 0.26 12.76 -35.23 -0.45 -0.19 16 10 Si 0.95 -0.87 25.06 -169.99 -4.26 -5.13 16 11 H -0.25 0.06 7.11 56.52 0.40 0.46 16 12 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 13 H -0.25 0.13 7.11 56.52 0.40 0.53 16 14 C -0.18 -0.14 8.60 -39.43 -0.34 -0.48 16 15 C 0.13 0.34 6.70 -39.15 -0.26 0.08 16 16 O -0.29 -0.75 9.88 -40.75 -0.40 -1.15 16 17 C 0.05 -0.03 5.12 37.16 0.19 0.16 16 18 C 0.09 -0.11 5.50 37.16 0.20 0.10 16 19 O -0.62 -0.13 8.52 -40.08 -0.34 -0.48 16 20 Si 1.29 -1.52 8.45 -169.99 -1.44 -2.95 16 21 C -0.51 0.63 8.50 101.05 0.86 1.49 16 22 C -0.51 0.22 8.50 101.05 0.86 1.08 16 23 C -0.37 0.15 0.53 -90.62 -0.05 0.10 16 24 C -0.13 0.02 7.84 37.16 0.29 0.31 16 25 C -0.14 0.10 7.85 37.16 0.29 0.39 16 26 C -0.13 -0.02 7.85 37.15 0.29 0.28 16 27 H 0.04 -0.03 8.14 -51.93 -0.42 -0.46 16 28 H 0.05 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.39 -1.24 9.06 45.56 0.41 -0.83 16 31 H 0.13 -0.01 4.87 -52.49 -0.26 -0.27 16 32 H 0.12 -0.27 7.96 -51.93 -0.41 -0.68 16 33 H 0.38 -1.26 8.70 45.56 0.40 -0.87 16 34 H 0.14 -0.11 6.29 -52.49 -0.33 -0.44 16 35 H 0.08 -0.11 7.66 -51.93 -0.40 -0.51 16 36 H 0.08 -0.20 7.66 -51.93 -0.40 -0.59 16 37 H 0.08 -0.29 7.21 -51.92 -0.37 -0.67 16 38 H 0.07 -0.12 7.21 -51.93 -0.37 -0.49 16 39 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 40 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 42 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 43 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 44 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 45 H 0.05 -0.04 7.80 -51.93 -0.40 -0.45 16 46 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 47 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 48 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 49 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 50 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 51 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 52 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 53 H 0.05 -0.01 7.79 -51.92 -0.40 -0.42 16 LS Contribution 425.37 15.07 6.41 6.41 Total: 0.00 -7.72 425.37 -7.12 -14.85 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: -7.91 Total: -12.00 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 2.17 Total: 3.70 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -2.10 Total: -4.87 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: -5.70 Total: -8.08 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -7.72 -7.12 -14.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_10902662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.819 kcal (2) G-P(sol) polarization free energy of solvation -7.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds