Wall clock time and date at job start Mon Mar 8 2021 10:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36091 * 116.99877 * 2 1 4 4 C 1.38960 * 120.09137 * 89.99799 * 3 2 1 5 5 O 1.35995 * 120.04487 * 0.02562 * 4 3 2 6 6 C 1.38688 * 119.90928 * 179.74512 * 4 3 2 7 7 C 1.38200 * 120.08937 * 0.25173 * 6 4 3 8 8 C 1.50703 * 119.91033 * 180.02562 * 7 6 4 9 9 O 1.42899 * 109.47008 * 119.99998 * 8 7 6 10 10 Si 1.86299 * 109.46929 * 0.02562 * 8 7 6 11 11 H 1.48496 * 109.47307 * 59.99945 * 10 8 7 12 12 H 1.48505 * 109.47134 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46979 * 299.99445 * 10 8 7 14 14 C 1.38250 * 120.18379 * 0.02562 * 7 6 4 15 15 C 1.38647 * 120.08448 * 359.97438 * 14 7 6 16 16 O 1.35997 * 120.04250 * 179.97438 * 15 14 7 17 17 C 1.42902 * 117.00108 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.46930 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.47360 * 65.00385 * 18 17 16 20 20 Si 1.63101 * 114.00537 * 179.97438 * 19 18 17 21 21 C 1.86305 * 109.46799 * 299.99804 * 20 19 18 22 22 C 1.86299 * 109.47104 * 59.99245 * 20 19 18 23 23 C 1.86301 * 109.47306 * 179.97438 * 20 19 18 24 24 C 1.52997 * 109.47014 * 59.99998 * 23 20 19 25 25 C 1.52999 * 109.47034 * 179.97438 * 23 20 19 26 26 C 1.52994 * 109.46993 * 299.99812 * 23 20 19 27 27 H 1.09003 * 109.47404 * 300.00210 * 1 2 3 28 28 H 1.09006 * 109.47137 * 60.00464 * 1 2 3 29 29 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 30 30 H 0.96700 * 114.00111 * 269.72567 * 5 4 3 31 31 H 1.08002 * 119.95283 * 180.22961 * 6 4 3 32 32 H 1.08996 * 109.47504 * 239.99925 * 8 7 6 33 33 H 0.96696 * 114.00531 * 299.99737 * 9 8 7 34 34 H 1.07994 * 119.95771 * 179.97438 * 14 7 6 35 35 H 1.08995 * 109.47167 * 299.99600 * 17 16 15 36 36 H 1.08999 * 109.46799 * 59.99601 * 17 16 15 37 37 H 1.09007 * 109.46957 * 184.99757 * 18 17 16 38 38 H 1.08998 * 109.47626 * 305.00008 * 18 17 16 39 39 H 1.08994 * 109.47209 * 59.99662 * 21 20 19 40 40 H 1.09000 * 109.46815 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.46612 * 299.99922 * 21 20 19 42 42 H 1.09005 * 109.47234 * 60.00662 * 22 20 19 43 43 H 1.09000 * 109.47037 * 179.97438 * 22 20 19 44 44 H 1.08994 * 109.47268 * 300.00562 * 22 20 19 45 45 H 1.08996 * 109.47515 * 59.99590 * 24 23 20 46 46 H 1.09003 * 109.46933 * 180.02562 * 24 23 20 47 47 H 1.09004 * 109.46871 * 299.99424 * 24 23 20 48 48 H 1.09001 * 109.47091 * 59.99432 * 25 23 20 49 49 H 1.08994 * 109.47245 * 179.97438 * 25 23 20 50 50 H 1.09005 * 109.47299 * 299.99746 * 25 23 20 51 51 H 1.09004 * 109.47630 * 60.00124 * 26 23 20 52 52 H 1.09003 * 109.47077 * 180.02562 * 26 23 20 53 53 H 1.09008 * 109.47426 * 299.99785 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3631 1.8334 1.2023 5 8 2.0561 1.2298 2.3817 6 6 2.9974 3.0667 1.1979 7 6 3.3103 3.6806 0.0000 8 6 4.0002 5.0205 -0.0001 9 8 5.2541 4.9106 -0.6765 10 14 4.2888 5.5704 1.7563 11 1 5.1420 4.5744 2.4530 12 1 4.9692 6.8904 1.7563 13 1 2.9859 5.6845 2.4597 14 6 2.9923 3.0690 -1.1984 15 6 2.3581 1.8361 -1.2027 16 8 2.0451 1.2355 -2.3820 17 6 2.3997 1.9315 -3.5787 18 6 1.9719 1.1066 -4.7941 19 8 0.5468 1.0057 -4.8237 20 14 -0.0315 0.1445 -6.0824 21 6 0.4960 0.9475 -7.6786 22 6 0.6412 -1.5912 -6.0085 23 6 -1.8918 0.0932 -5.9974 24 6 -2.4446 1.5185 -6.0578 25 6 -2.4342 -0.7141 -7.1785 26 6 -2.3244 -0.5665 -4.6865 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.1817 1.4592 2.7251 31 1 3.2469 3.5481 2.1320 32 1 3.3742 5.7515 -0.5119 33 1 5.8634 4.2761 -0.2750 34 1 3.2381 3.5522 -2.1324 35 1 1.8962 2.8979 -3.5996 36 1 3.4788 2.0833 -3.6045 37 1 2.3205 1.5937 -5.7048 38 1 2.4054 0.1088 -4.7270 39 1 1.5844 0.9772 -7.7281 40 1 0.1092 0.3722 -8.5198 41 1 0.1024 1.9631 -7.7218 42 1 0.3326 -2.0611 -5.0746 43 1 0.2544 -2.1669 -6.8494 44 1 1.7296 -1.5615 -6.0580 45 1 -2.1363 1.9886 -6.9916 46 1 -3.5330 1.4885 -6.0076 47 1 -2.0582 2.0940 -5.2165 48 1 -2.0403 -1.7296 -7.1359 49 1 -3.5226 -0.7445 -7.1285 50 1 -2.1260 -0.2437 -8.1122 51 1 -1.9380 0.0090 -3.8452 52 1 -3.4129 -0.5969 -4.6370 53 1 -1.9306 -1.5820 -4.6435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_10902662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:32 Heat of formation + Delta-G solvation = -217.741855 kcal Electronic energy + Delta-G solvation = -31582.065774 eV Core-core repulsion = 27350.518623 eV Total energy + Delta-G solvation = -4231.547151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 358.186 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86850 -39.84060 -38.99666 -38.20829 -37.71267 -36.83413 -36.44406 -32.06755 -30.79013 -30.28654 -29.31846 -29.06349 -28.23821 -27.84152 -27.38391 -26.18287 -24.67906 -22.94118 -22.60949 -20.42576 -19.91582 -18.68585 -18.48672 -18.29771 -18.06300 -17.46381 -16.81067 -16.37509 -16.19146 -16.09601 -15.95991 -15.82725 -15.58243 -15.47201 -15.33065 -14.96216 -14.85339 -14.73435 -14.39213 -13.95972 -13.63249 -13.49315 -13.35708 -13.30150 -13.18267 -13.04298 -12.96072 -12.93088 -12.78922 -12.67111 -12.56241 -12.40380 -12.18241 -12.00248 -11.93016 -11.79441 -11.73342 -11.66346 -11.51390 -11.26600 -10.89039 -10.46218 -10.32097 -10.05765 -9.71513 -9.29439 -0.13010 0.11172 1.16200 1.47424 1.51433 1.53084 1.78425 1.91667 2.01760 2.13370 2.21879 2.47648 2.73945 3.10185 3.43265 3.66293 3.90165 3.93653 3.96972 4.09038 4.11620 4.12626 4.20998 4.30742 4.35155 4.39636 4.43048 4.46762 4.47150 4.60016 4.65921 4.73854 4.75627 4.77119 4.79079 4.80172 4.81636 4.82956 4.88203 4.99366 5.03776 5.08460 5.09029 5.19253 5.20784 5.32789 5.37623 5.40337 5.42979 5.49049 5.59176 5.64808 6.07152 6.43539 6.67104 6.75333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.339 6.339 3 C 0.015 3.985 4 C 0.128 3.872 5 O -0.496 6.496 6 C -0.184 4.184 7 C -0.064 4.064 8 C -0.074 4.074 9 O -0.547 6.547 10 Si 0.978 3.022 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.254 1.254 14 C -0.179 4.179 15 C 0.123 3.877 16 O -0.310 6.310 17 C 0.044 3.956 18 C 0.076 3.924 19 O -0.637 6.637 20 Si 1.316 2.684 21 C -0.514 4.514 22 C -0.521 4.521 23 C -0.383 4.383 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.135 4.135 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.410 0.590 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.390 0.610 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.065 0.935 51 H 0.052 0.948 52 H 0.048 0.952 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 2.851 -2.165 3.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.256 6.256 3 C -0.030 4.030 4 C 0.082 3.918 5 O -0.309 6.309 6 C -0.202 4.202 7 C -0.064 4.064 8 C -0.185 4.185 9 O -0.354 6.354 10 Si 0.803 3.197 11 H -0.183 1.183 12 H -0.196 1.196 13 H -0.178 1.178 14 C -0.197 4.197 15 C 0.076 3.924 16 O -0.223 6.223 17 C -0.030 4.030 18 C 0.001 3.999 19 O -0.597 6.597 20 Si 1.446 2.554 21 C -0.617 4.617 22 C -0.622 4.622 23 C -0.425 4.425 24 C -0.193 4.193 25 C -0.198 4.198 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.269 0.731 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.239 0.761 34 H 0.176 0.824 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.067 0.933 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.253 3.078 -1.557 3.458 hybrid contribution -0.720 -0.675 -0.285 1.028 sum -0.974 2.403 -1.841 3.180 Atomic orbital electron populations 1.23127 0.77954 1.04301 1.00895 1.86134 1.21193 1.24069 1.94224 1.18566 1.04518 0.89569 0.90317 1.18372 0.98301 0.90579 0.84508 1.84840 1.41152 1.70546 1.34339 1.21259 1.04857 0.95100 0.99024 1.20151 0.97255 0.97165 0.91872 1.25009 0.87164 0.95606 1.10736 1.86486 1.25219 1.66413 1.57259 0.85263 0.80829 0.79432 0.74186 1.18302 1.19599 1.17838 1.21214 1.03380 0.94737 1.00388 1.19388 0.95406 0.91808 0.85756 1.86221 1.77197 1.46674 1.12205 1.23381 1.01300 0.96748 0.81610 1.22353 0.79417 1.01104 0.97048 1.85388 1.23667 1.81271 1.69329 0.76204 0.63150 0.60249 0.55834 1.27040 1.06434 1.08495 1.19702 1.27161 1.07140 1.23413 1.04466 1.25914 1.20870 0.97947 0.97772 1.21528 1.00756 0.95045 1.01923 1.21600 1.01174 0.99802 0.97183 1.21518 1.01097 1.00263 0.96366 0.92513 0.93614 0.87724 0.73063 0.84035 0.84546 0.76065 0.82369 0.89906 0.88460 0.87500 0.91248 0.90602 0.90379 0.90797 0.91822 0.90430 0.91138 0.91821 0.93390 0.92671 0.92040 0.93133 0.91584 0.92844 0.93270 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.13 113.37 1.26 1.36 16 2 O -0.34 -3.46 9.99 -70.44 -0.70 -4.16 16 3 C 0.02 0.13 5.75 22.63 0.13 0.26 16 4 C 0.13 0.70 6.71 22.55 0.15 0.86 16 5 O -0.50 -1.98 13.29 -79.54 -1.06 -3.04 16 6 C -0.18 -0.40 8.60 22.37 0.19 -0.21 16 7 C -0.06 -0.01 5.39 -19.87 -0.11 -0.12 16 8 C -0.07 0.23 2.82 71.24 0.20 0.43 16 9 O -0.55 1.18 12.76 -148.98 -1.90 -0.72 16 10 Si 0.98 -2.17 25.06 68.60 1.72 -0.45 16 11 H -0.26 0.16 7.11 99.48 0.71 0.87 16 12 H -0.27 -0.23 7.11 99.48 0.71 0.47 16 13 H -0.25 0.39 7.11 99.48 0.71 1.09 16 14 C -0.18 -0.22 8.60 22.37 0.19 -0.03 16 15 C 0.12 0.72 6.70 22.55 0.15 0.87 16 16 O -0.31 -1.83 9.88 -73.42 -0.73 -2.56 16 17 C 0.04 -0.07 5.12 71.98 0.37 0.30 16 18 C 0.08 -0.22 5.50 71.98 0.40 0.17 16 19 O -0.64 -0.34 8.52 -144.34 -1.23 -1.57 16 20 Si 1.32 -3.21 8.45 68.60 0.58 -2.63 16 21 C -0.51 1.84 8.50 113.37 0.96 2.80 16 22 C -0.52 0.31 8.50 113.37 0.96 1.28 16 23 C -0.38 0.12 0.53 -10.80 -0.01 0.11 16 24 C -0.14 -0.02 7.84 71.98 0.56 0.55 16 25 C -0.14 0.17 7.85 71.98 0.56 0.74 16 26 C -0.14 -0.20 7.85 71.98 0.56 0.37 16 27 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.05 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.41 -2.37 9.06 -74.06 -0.67 -3.04 16 31 H 0.14 -0.05 4.87 -2.91 -0.01 -0.06 16 32 H 0.14 -0.82 7.96 -2.39 -0.02 -0.84 16 33 H 0.39 -2.96 8.70 -74.06 -0.64 -3.60 16 34 H 0.16 -0.44 6.29 -2.91 -0.02 -0.46 16 35 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16 36 H 0.10 -0.58 7.66 -2.39 -0.02 -0.60 16 37 H 0.11 -0.96 7.21 -2.38 -0.02 -0.98 16 38 H 0.07 -0.24 7.21 -2.39 -0.02 -0.25 16 39 H 0.07 -0.39 7.48 -2.39 -0.02 -0.41 16 40 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 41 H 0.07 -0.25 7.79 -2.38 -0.02 -0.26 16 42 H 0.06 0.10 7.79 -2.38 -0.02 0.08 16 43 H 0.08 -0.12 7.79 -2.39 -0.02 -0.14 16 44 H 0.07 -0.10 7.48 -2.39 -0.02 -0.12 16 45 H 0.06 -0.12 7.80 -2.39 -0.02 -0.13 16 46 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.05 0.05 7.97 -2.38 -0.02 0.03 16 48 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 49 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 50 H 0.07 -0.21 7.79 -2.38 -0.02 -0.23 16 51 H 0.05 0.14 7.97 -2.38 -0.02 0.12 16 52 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 53 H 0.06 0.04 7.79 -2.38 -0.02 0.02 16 Total: 0.00 -18.00 425.37 3.58 -14.42 By element: Atomic # 1 Polarization: -9.36 SS G_CDS: 0.34 Total: -9.01 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.55 Total: 9.73 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -5.62 Total: -12.05 kcal Atomic # 14 Polarization: -5.38 SS G_CDS: 2.30 Total: -3.08 kcal Total: -18.00 3.58 -14.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_10902662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.324 kcal (2) G-P(sol) polarization free energy of solvation -17.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds