Wall clock time and date at job start Mon Mar 8 2021 10:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36093 * 117.00398 * 2 1 4 4 C 1.38966 * 120.08568 * 89.99971 * 3 2 1 5 5 O 1.36000 * 120.04321 * 0.02645 * 4 3 2 6 6 C 1.42898 * 116.99717 * 179.71978 * 5 4 3 7 7 C 1.53000 * 109.47043 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.84949 * 45.33633 * 7 6 5 9 9 C 1.53781 * 113.61707 * 176.53192 * 7 6 5 10 10 C 1.53777 * 87.08336 * 140.06298 * 9 7 6 11 11 H 1.09008 * 113.61204 * 89.11878 * 10 9 7 12 12 O 1.42896 * 113.61697 * 219.93327 * 10 9 7 13 13 C 1.53775 * 87.07992 * 334.56762 * 10 9 7 14 14 C 1.38679 * 119.90727 * 179.74856 * 4 3 2 15 15 C 1.38201 * 120.09299 * 0.25418 * 14 4 3 16 16 C 1.50702 * 119.91508 * 179.97438 * 15 14 4 17 17 O 1.42909 * 109.46958 * 300.00377 * 16 15 14 18 18 Si 1.86293 * 109.47558 * 180.02562 * 16 15 14 19 19 C 1.38256 * 120.18178 * 359.97438 * 15 14 4 20 20 C 1.38649 * 120.08291 * 0.02562 * 19 15 14 21 21 O 1.35993 * 120.04143 * 180.02562 * 20 19 15 22 22 H 1.09005 * 109.46942 * 300.00098 * 1 2 3 23 23 H 1.09004 * 109.47188 * 59.99132 * 1 2 3 24 24 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46793 * 60.00315 * 6 5 4 26 26 H 1.08992 * 109.47352 * 300.00252 * 6 5 4 27 27 H 1.08997 * 113.61673 * 254.61847 * 9 7 6 28 28 H 1.09009 * 113.61202 * 25.43077 * 9 7 6 29 29 H 0.96694 * 114.00132 * 179.97438 * 12 10 9 30 30 H 1.08993 * 113.61636 * 270.87622 * 13 10 9 31 31 H 1.09008 * 113.61006 * 139.97865 * 13 10 9 32 32 H 1.08004 * 119.95247 * 180.27654 * 14 4 3 33 33 H 1.09001 * 109.46986 * 59.99438 * 16 15 14 34 34 H 0.96704 * 113.99597 * 299.99196 * 17 16 15 35 35 H 1.48500 * 110.00050 * 58.68108 * 18 16 15 36 36 H 1.48503 * 110.00324 * 180.02562 * 18 16 15 37 37 H 1.07995 * 119.95845 * 179.97438 * 19 15 14 38 38 H 0.96704 * 113.99797 * 89.99908 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 2.3632 1.8332 1.2024 5 8 2.0561 1.2295 2.3818 6 6 2.4162 1.9225 3.5784 7 6 1.9935 1.0951 4.7939 8 1 2.2539 0.0408 4.6996 9 6 2.4123 1.7153 6.1373 10 6 1.0425 1.2736 6.6788 11 1 1.0430 0.2681 7.0998 12 8 0.4302 2.2354 7.5401 13 6 0.5375 1.3335 5.2276 14 6 2.9976 3.0664 1.1981 15 6 3.3105 3.6805 0.0002 16 6 3.9993 5.0209 0.0002 17 8 3.1805 5.9773 0.6763 18 14 4.2794 5.5753 -1.7561 19 6 2.9933 3.0686 -1.1982 20 6 2.3590 1.8357 -1.2026 21 8 2.0479 1.2343 -2.3820 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9125 2.8888 3.6042 26 1 3.4953 2.0746 3.5995 27 1 3.2531 1.2072 6.6096 28 1 2.5396 2.7972 6.0980 29 1 -0.4319 1.9634 7.8835 30 1 0.1507 2.3111 4.9399 31 1 -0.1355 0.5170 4.9654 32 1 3.2477 3.5474 2.1322 33 1 4.9578 4.9368 0.5124 34 1 2.3101 6.1038 0.2744 35 1 2.9824 5.6634 -2.4739 36 1 4.9587 6.8958 -1.7698 37 1 3.2391 3.5519 -2.1322 38 1 2.7435 0.6562 -2.7242 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_18340330_11354860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:50:11 Heat of formation + Delta-G solvation = -137.704053 kcal Electronic energy + Delta-G solvation = -22802.490426 eV Core-core repulsion = 19193.007413 eV Total energy + Delta-G solvation = -3609.483013 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.123 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87744 -40.62122 -39.33324 -38.99753 -38.09129 -36.64352 -36.00160 -31.85909 -30.61020 -29.38364 -28.21585 -26.84200 -26.13275 -24.38447 -22.94759 -22.61651 -20.69226 -19.84843 -18.83812 -18.59341 -18.17533 -18.07271 -17.49682 -17.16780 -16.51266 -16.22543 -16.21052 -16.08192 -15.83253 -15.51186 -15.25699 -14.95986 -14.50774 -14.05937 -13.58748 -13.55249 -13.31989 -13.20416 -12.76884 -12.68273 -12.62554 -12.38540 -12.25461 -11.93213 -11.78874 -11.73474 -11.32389 -10.86133 -10.78903 -10.72408 -9.68172 -9.28199 -5.01082 -0.12445 0.14407 1.19971 1.56926 1.88305 1.92489 2.20084 2.80940 3.09418 3.18871 3.27571 3.36204 3.45602 3.55641 3.71325 3.81204 3.91907 3.96253 4.09117 4.11718 4.20171 4.32636 4.38181 4.45400 4.46046 4.49818 4.57106 4.66487 4.67992 4.79488 4.86486 4.88758 5.01593 5.07200 5.21829 5.25200 5.34560 6.06476 6.29645 6.42842 6.62932 6.71198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.040 3.960 4 C 0.131 3.869 5 O -0.298 6.298 6 C 0.068 3.932 7 C -0.109 4.109 8 H 0.107 0.893 9 C -0.120 4.120 10 C 0.076 3.924 11 H 0.085 0.915 12 O -0.560 6.560 13 C -0.163 4.163 14 C -0.182 4.182 15 C -0.066 4.066 16 C -0.076 4.076 17 O -0.528 6.528 18 Si 0.686 3.314 19 C -0.170 4.170 20 C 0.136 3.864 21 O -0.487 6.487 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.380 0.620 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.377 0.623 35 H -0.258 1.258 36 H -0.255 1.255 37 H 0.141 0.859 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -1.970 -0.191 2.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.236 6.236 3 C -0.005 4.005 4 C 0.085 3.915 5 O -0.211 6.211 6 C -0.007 4.007 7 C -0.127 4.127 8 H 0.125 0.875 9 C -0.157 4.157 10 C 0.017 3.983 11 H 0.103 0.897 12 O -0.366 6.366 13 C -0.201 4.201 14 C -0.201 4.201 15 C -0.067 4.067 16 C -0.186 4.186 17 O -0.334 6.334 18 Si 0.587 3.413 19 C -0.188 4.188 20 C 0.091 3.909 21 O -0.298 6.298 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.228 0.772 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.225 0.775 35 H -0.183 1.183 36 H -0.180 1.180 37 H 0.158 0.842 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.134 -1.057 -0.443 1.612 hybrid contribution -1.230 0.033 0.588 1.364 sum -0.097 -1.023 0.146 1.038 Atomic orbital electron populations 1.23012 0.78646 1.03340 1.00618 1.86072 1.20146 1.23277 1.94056 1.18371 1.04075 0.88653 0.89402 1.19241 0.95391 0.91165 0.85748 1.86171 1.76998 1.46221 1.11734 1.22901 1.00311 0.95457 0.82013 1.22319 0.97447 1.01004 0.91927 0.87520 1.23066 0.96553 1.02447 0.93660 1.23285 0.94112 0.92363 0.88509 0.89699 1.86523 1.38077 1.45264 1.66691 1.23768 0.96349 1.03169 0.96832 1.21050 1.04491 0.94982 0.99555 1.19955 0.97889 0.96571 0.92286 1.25083 0.96427 0.86335 1.10709 1.86607 1.30788 1.60696 1.55321 0.94897 0.85565 0.85127 0.75722 1.21124 1.02847 0.96670 0.98143 1.18315 0.96653 0.91446 0.84524 1.84785 1.45895 1.64660 1.34429 0.93646 0.93308 0.88699 0.91503 0.91336 0.90033 0.88775 0.77189 0.89138 0.90765 0.84275 0.85952 0.77484 1.18264 1.17953 0.84217 0.74317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.06 11.13 101.05 1.13 1.18 16 2 O -0.32 -1.21 9.98 -45.29 -0.45 -1.66 16 3 C 0.04 0.12 5.75 -39.03 -0.22 -0.10 16 4 C 0.13 0.33 6.70 -39.15 -0.26 0.07 16 5 O -0.30 -0.74 9.92 -34.34 -0.34 -1.08 16 6 C 0.07 0.00 4.57 37.16 0.17 0.17 16 7 C -0.11 0.08 4.01 -89.81 -0.36 -0.28 16 8 H 0.11 -0.08 8.14 -51.93 -0.42 -0.51 16 9 C -0.12 0.10 7.47 -25.92 -0.19 -0.09 16 10 C 0.08 -0.05 5.21 -25.92 -0.14 -0.19 16 11 H 0.09 -0.17 8.14 -51.92 -0.42 -0.59 16 12 O -0.56 -0.36 13.67 -35.23 -0.48 -0.84 16 13 C -0.16 0.10 7.47 -25.92 -0.19 -0.09 16 14 C -0.18 -0.20 8.60 -39.43 -0.34 -0.54 16 15 C -0.07 -0.02 5.39 -104.63 -0.56 -0.59 16 16 C -0.08 0.04 2.82 36.01 0.10 0.14 16 17 O -0.53 -0.44 12.76 -35.23 -0.45 -0.89 16 18 Si 0.69 -0.76 29.78 -169.99 -5.06 -5.83 16 19 C -0.17 -0.06 8.60 -39.42 -0.34 -0.40 16 20 C 0.14 0.23 6.71 -39.15 -0.26 -0.03 16 21 O -0.49 -0.37 13.29 -34.29 -0.46 -0.82 16 22 H 0.04 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 24 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 25 H 0.07 -0.02 7.40 -51.93 -0.38 -0.41 16 26 H 0.07 -0.07 7.66 -51.93 -0.40 -0.46 16 27 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 28 H 0.09 -0.03 8.10 -51.92 -0.42 -0.45 16 29 H 0.38 -1.27 9.12 45.56 0.42 -0.85 16 30 H 0.09 0.01 7.92 -51.93 -0.41 -0.40 16 31 H 0.07 -0.06 8.14 -51.92 -0.42 -0.49 16 32 H 0.14 0.02 6.29 -52.48 -0.33 -0.31 16 33 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 34 H 0.38 -0.65 8.70 45.56 0.40 -0.26 16 35 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 36 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 37 H 0.14 -0.19 4.87 -52.49 -0.26 -0.44 16 38 H 0.40 -1.48 9.06 45.56 0.41 -1.06 16 LS Contribution 322.12 15.07 4.85 4.85 Total: 0.00 -8.19 322.12 -7.41 -15.60 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -3.54 Total: -8.58 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.48 Total: -0.74 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -2.18 Total: -5.30 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: -5.06 Total: -5.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -8.19 -7.41 -15.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_11354860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.108 kcal (2) G-P(sol) polarization free energy of solvation -8.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds