Wall clock time and date at job start Mon Mar 8 2021 10:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36093 * 117.00398 * 2 1 4 4 C 1.38966 * 120.08568 * 89.99971 * 3 2 1 5 5 O 1.36000 * 120.04321 * 0.02645 * 4 3 2 6 6 C 1.42898 * 116.99717 * 179.71978 * 5 4 3 7 7 C 1.53000 * 109.47043 * 179.97438 * 6 5 4 8 8 H 1.09002 * 112.84949 * 45.33633 * 7 6 5 9 9 C 1.53781 * 113.61707 * 176.53192 * 7 6 5 10 10 C 1.53777 * 87.08336 * 140.06298 * 9 7 6 11 11 H 1.09008 * 113.61204 * 89.11878 * 10 9 7 12 12 O 1.42896 * 113.61697 * 219.93327 * 10 9 7 13 13 C 1.53775 * 87.07992 * 334.56762 * 10 9 7 14 14 C 1.38679 * 119.90727 * 179.74856 * 4 3 2 15 15 C 1.38201 * 120.09299 * 0.25418 * 14 4 3 16 16 C 1.50702 * 119.91508 * 179.97438 * 15 14 4 17 17 O 1.42909 * 109.46958 * 300.00377 * 16 15 14 18 18 Si 1.86293 * 109.47558 * 180.02562 * 16 15 14 19 19 C 1.38256 * 120.18178 * 359.97438 * 15 14 4 20 20 C 1.38649 * 120.08291 * 0.02562 * 19 15 14 21 21 O 1.35993 * 120.04143 * 180.02562 * 20 19 15 22 22 H 1.09005 * 109.46942 * 300.00098 * 1 2 3 23 23 H 1.09004 * 109.47188 * 59.99132 * 1 2 3 24 24 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46793 * 60.00315 * 6 5 4 26 26 H 1.08992 * 109.47352 * 300.00252 * 6 5 4 27 27 H 1.08997 * 113.61673 * 254.61847 * 9 7 6 28 28 H 1.09009 * 113.61202 * 25.43077 * 9 7 6 29 29 H 0.96694 * 114.00132 * 179.97438 * 12 10 9 30 30 H 1.08993 * 113.61636 * 270.87622 * 13 10 9 31 31 H 1.09008 * 113.61006 * 139.97865 * 13 10 9 32 32 H 1.08004 * 119.95247 * 180.27654 * 14 4 3 33 33 H 1.09001 * 109.46986 * 59.99438 * 16 15 14 34 34 H 0.96704 * 113.99597 * 299.99196 * 17 16 15 35 35 H 1.48500 * 110.00050 * 58.68108 * 18 16 15 36 36 H 1.48503 * 110.00324 * 180.02562 * 18 16 15 37 37 H 1.07995 * 119.95845 * 179.97438 * 19 15 14 38 38 H 0.96704 * 113.99797 * 89.99908 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 2.3632 1.8332 1.2024 5 8 2.0561 1.2295 2.3818 6 6 2.4162 1.9225 3.5784 7 6 1.9935 1.0951 4.7939 8 1 2.2539 0.0408 4.6996 9 6 2.4123 1.7153 6.1373 10 6 1.0425 1.2736 6.6788 11 1 1.0430 0.2681 7.0998 12 8 0.4302 2.2354 7.5401 13 6 0.5375 1.3335 5.2276 14 6 2.9976 3.0664 1.1981 15 6 3.3105 3.6805 0.0002 16 6 3.9993 5.0209 0.0002 17 8 3.1805 5.9773 0.6763 18 14 4.2794 5.5753 -1.7561 19 6 2.9933 3.0686 -1.1982 20 6 2.3590 1.8357 -1.2026 21 8 2.0479 1.2343 -2.3820 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9125 2.8888 3.6042 26 1 3.4953 2.0746 3.5995 27 1 3.2531 1.2072 6.6096 28 1 2.5396 2.7972 6.0980 29 1 -0.4319 1.9634 7.8835 30 1 0.1507 2.3111 4.9399 31 1 -0.1355 0.5170 4.9654 32 1 3.2477 3.5474 2.1322 33 1 4.9578 4.9368 0.5124 34 1 2.3101 6.1038 0.2744 35 1 2.9824 5.6634 -2.4739 36 1 4.9587 6.8958 -1.7698 37 1 3.2391 3.5519 -2.1322 38 1 2.7435 0.6562 -2.7242 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_11354860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:50:10 Heat of formation + Delta-G solvation = -140.853816 kcal Electronic energy + Delta-G solvation = -22802.627010 eV Core-core repulsion = 19193.007413 eV Total energy + Delta-G solvation = -3609.619597 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94283 -40.59652 -39.37174 -39.06944 -38.15467 -36.67308 -35.99174 -31.92025 -30.66023 -29.37953 -28.29876 -26.77874 -26.17627 -24.39668 -22.96381 -22.65987 -20.64440 -19.89336 -18.85841 -18.66602 -18.18587 -18.11992 -17.54805 -17.21619 -16.53358 -16.23781 -16.19338 -16.10093 -15.85746 -15.56522 -15.31272 -15.00415 -14.51081 -14.11637 -13.61953 -13.51046 -13.34550 -13.22597 -12.77454 -12.68764 -12.66437 -12.36437 -12.25756 -12.02193 -11.76483 -11.74777 -11.26286 -10.93827 -10.77817 -10.72796 -9.74529 -9.36637 -4.94443 -0.19208 0.08371 1.25032 1.59914 1.85998 1.93790 2.14756 2.73785 3.11892 3.27448 3.30995 3.41899 3.52275 3.56990 3.76952 3.85602 3.90372 3.96479 4.11514 4.16500 4.20025 4.34742 4.36931 4.37739 4.41515 4.52267 4.64335 4.70700 4.71957 4.75607 4.83400 4.93820 5.01654 5.08133 5.17159 5.30467 5.36292 5.99758 6.39716 6.42217 6.75176 6.83772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.017 3.983 4 C 0.120 3.880 5 O -0.314 6.314 6 C 0.066 3.934 7 C -0.104 4.104 8 H 0.108 0.892 9 C -0.120 4.120 10 C 0.075 3.925 11 H 0.100 0.900 12 O -0.581 6.581 13 C -0.163 4.163 14 C -0.184 4.184 15 C -0.061 4.061 16 C -0.081 4.081 17 O -0.544 6.544 18 Si 0.768 3.232 19 C -0.168 4.168 20 C 0.134 3.866 21 O -0.497 6.497 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.387 0.613 35 H -0.286 1.286 36 H -0.298 1.298 37 H 0.157 0.843 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -2.094 -0.262 2.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.253 6.253 3 C -0.028 4.028 4 C 0.073 3.927 5 O -0.227 6.227 6 C -0.008 4.008 7 C -0.123 4.123 8 H 0.126 0.874 9 C -0.157 4.157 10 C 0.016 3.984 11 H 0.118 0.882 12 O -0.390 6.390 13 C -0.201 4.201 14 C -0.203 4.203 15 C -0.062 4.062 16 C -0.190 4.190 17 O -0.352 6.352 18 Si 0.673 3.327 19 C -0.186 4.186 20 C 0.089 3.911 21 O -0.310 6.310 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.128 0.872 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.236 0.764 35 H -0.213 1.213 36 H -0.226 1.226 37 H 0.174 0.826 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.561 -1.210 -0.505 2.039 hybrid contribution -1.390 0.108 0.597 1.517 sum 0.171 -1.103 0.092 1.119 Atomic orbital electron populations 1.23095 0.77949 1.04309 1.00344 1.86033 1.21044 1.24058 1.94196 1.18649 1.05038 0.88950 0.90205 1.19375 0.95898 0.91715 0.85702 1.86143 1.77336 1.46958 1.12297 1.23015 1.00890 0.95460 0.81468 1.22290 0.97303 1.00974 0.91704 0.87365 1.23069 0.96994 1.02107 0.93554 1.23395 0.93945 0.92813 0.88231 0.88246 1.86478 1.39307 1.46207 1.66966 1.23733 0.96493 1.02662 0.97184 1.21154 1.04335 0.94575 1.00231 1.20055 0.97410 0.96703 0.92039 1.25286 0.96682 0.85614 1.11438 1.86583 1.31636 1.60945 1.56079 0.93957 0.82485 0.82404 0.73822 1.21279 1.02315 0.96202 0.98840 1.18394 0.96473 0.91830 0.84423 1.84736 1.47153 1.65147 1.34013 0.93986 0.93459 0.87151 0.91475 0.90443 0.89080 0.89464 0.75486 0.90119 0.90612 0.83570 0.84680 0.76390 1.21288 1.22579 0.82590 0.72240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 11.13 113.37 1.26 1.40 16 2 O -0.34 -2.86 9.98 -70.45 -0.70 -3.57 16 3 C 0.02 0.11 5.75 22.63 0.13 0.24 16 4 C 0.12 0.69 6.70 22.55 0.15 0.84 16 5 O -0.31 -1.84 9.92 -79.60 -0.79 -2.63 16 6 C 0.07 0.03 4.57 71.98 0.33 0.36 16 7 C -0.10 0.12 4.01 -10.27 -0.04 0.08 16 8 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 9 C -0.12 0.20 7.47 31.12 0.23 0.43 16 10 C 0.07 -0.10 5.21 31.12 0.16 0.06 16 11 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 12 O -0.58 -0.80 13.67 -148.98 -2.04 -2.83 16 13 C -0.16 0.12 7.47 31.12 0.23 0.35 16 14 C -0.18 -0.43 8.60 22.37 0.19 -0.23 16 15 C -0.06 -0.01 5.39 -19.87 -0.11 -0.12 16 16 C -0.08 0.15 2.82 71.24 0.20 0.35 16 17 O -0.54 -0.71 12.76 -148.98 -1.90 -2.61 16 18 Si 0.77 -2.09 29.78 68.60 2.04 -0.05 16 19 C -0.17 -0.04 8.60 22.37 0.19 0.15 16 20 C 0.13 0.47 6.71 22.55 0.15 0.62 16 21 O -0.50 -0.70 13.29 -79.53 -1.06 -1.75 16 22 H 0.04 0.17 8.14 -2.38 -0.02 0.15 16 23 H 0.05 0.17 8.14 -2.38 -0.02 0.15 16 24 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 25 H 0.07 0.00 7.40 -2.39 -0.02 -0.01 16 26 H 0.08 -0.13 7.66 -2.39 -0.02 -0.15 16 27 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.09 -0.02 8.10 -2.38 -0.02 -0.04 16 29 H 0.40 -2.60 9.12 -74.06 -0.68 -3.27 16 30 H 0.08 0.10 7.92 -2.39 -0.02 0.08 16 31 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 32 H 0.15 0.05 6.29 -2.91 -0.02 0.03 16 33 H 0.14 -0.58 7.96 -2.39 -0.02 -0.60 16 34 H 0.39 -1.41 8.70 -74.05 -0.64 -2.06 16 35 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 36 H -0.30 -1.38 7.11 99.48 0.71 -0.68 16 37 H 0.16 -0.58 4.87 -2.91 -0.01 -0.59 16 38 H 0.42 -3.19 9.06 -74.05 -0.67 -3.86 16 Total: 0.00 -18.60 322.12 -2.20 -20.79 By element: Atomic # 1 Polarization: -11.04 SS G_CDS: -0.84 Total: -11.88 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.09 Total: 4.54 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -6.49 Total: -13.40 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.04 Total: -0.05 kcal Total: -18.60 -2.20 -20.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_11354860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.061 kcal (2) G-P(sol) polarization free energy of solvation -18.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds