Wall clock time and date at job start Mon Mar 8 2021 09:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36087 * 116.99531 * 2 1 4 4 C 1.38959 * 120.08912 * 90.00523 * 3 2 1 5 5 O 1.35994 * 120.04619 * 0.02562 * 4 3 2 6 6 C 1.42897 * 117.00186 * 179.72440 * 5 4 3 7 7 C 1.53006 * 109.46881 * 179.97438 * 6 5 4 8 8 H 1.08989 * 112.84969 * 316.19620 * 7 6 5 9 9 C 1.53784 * 113.61171 * 87.50487 * 7 6 5 10 10 C 1.53779 * 87.07962 * 139.97968 * 9 7 6 11 11 H 1.09003 * 113.61800 * 89.11313 * 10 9 7 12 12 O 1.42898 * 113.68934 * 220.00756 * 10 9 7 13 13 C 1.42907 * 113.99946 * 247.53515 * 12 10 9 14 14 C 1.52994 * 109.47046 * 59.99665 * 13 12 10 15 15 C 1.53000 * 109.47371 * 179.97438 * 13 12 10 16 16 C 1.53007 * 109.46948 * 299.99809 * 13 12 10 17 17 C 1.53779 * 87.08153 * 334.56390 * 10 9 7 18 18 C 1.38684 * 119.90987 * 179.74205 * 4 3 2 19 19 C 1.38206 * 120.09091 * 0.25228 * 18 4 3 20 20 C 1.50705 * 119.91322 * 179.97438 * 19 18 4 21 21 O 1.42904 * 109.47154 * 300.00385 * 20 19 18 22 22 Si 1.86300 * 109.47244 * 180.02562 * 20 19 18 23 23 C 1.38253 * 120.18034 * 0.02562 * 19 18 4 24 24 C 1.38640 * 120.08625 * 359.97438 * 23 19 18 25 25 O 1.35997 * 120.04605 * 180.02562 * 24 23 19 26 26 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46893 * 299.99247 * 1 2 3 28 28 H 1.08999 * 109.47516 * 59.99940 * 1 2 3 29 29 H 1.08992 * 109.47198 * 59.99981 * 6 5 4 30 30 H 1.08997 * 109.46749 * 299.99743 * 6 5 4 31 31 H 1.09005 * 113.60951 * 254.52327 * 9 7 6 32 32 H 1.08996 * 113.61961 * 25.42950 * 9 7 6 33 33 H 1.09007 * 109.47222 * 60.00405 * 14 13 12 34 34 H 1.09002 * 109.47478 * 179.97438 * 14 13 12 35 35 H 1.09001 * 109.47258 * 300.00085 * 14 13 12 36 36 H 1.09002 * 109.46922 * 59.99333 * 15 13 12 37 37 H 1.08998 * 109.47287 * 179.97438 * 15 13 12 38 38 H 1.08999 * 109.46751 * 299.99911 * 15 13 12 39 39 H 1.09003 * 109.46796 * 59.99659 * 16 13 12 40 40 H 1.09002 * 109.46658 * 179.97438 * 16 13 12 41 41 H 1.08997 * 109.46950 * 299.99664 * 16 13 12 42 42 H 1.08999 * 113.61946 * 270.88503 * 17 10 9 43 43 H 1.09005 * 113.61625 * 139.98462 * 17 10 9 44 44 H 1.08004 * 119.95648 * 180.23103 * 18 4 3 45 45 H 1.09001 * 109.46848 * 59.99914 * 20 19 18 46 46 H 0.96697 * 113.99918 * 300.00178 * 21 20 19 47 47 H 1.48497 * 109.99719 * 179.97438 * 22 20 19 48 48 H 1.48493 * 109.99828 * 301.31822 * 22 20 19 49 49 H 1.07998 * 119.95777 * 180.02562 * 23 19 18 50 50 H 0.96696 * 114.00448 * 89.99257 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3631 1.8333 1.2023 5 8 2.0563 1.2296 2.3817 6 6 2.4163 1.9227 3.5783 7 6 1.9938 1.0951 4.7938 8 1 0.9942 0.6728 4.6915 9 6 3.0530 0.0744 5.2425 10 6 2.6886 0.4500 6.6885 11 1 1.8794 -0.1500 7.1048 12 8 3.8175 0.5403 7.5600 13 6 3.8568 -0.4727 8.5672 14 6 3.9080 -1.8502 7.9032 15 6 5.1008 -0.2796 9.4366 16 6 2.6038 -0.3734 9.4396 17 6 2.2267 1.8087 6.1360 18 6 2.9974 3.0666 1.1980 19 6 3.3103 3.6807 0.0000 20 6 3.9991 5.0211 0.0000 21 8 3.1803 5.9774 0.6761 22 14 4.2791 5.5754 -1.7564 23 6 2.9921 3.0691 -1.1984 24 6 2.3580 1.8363 -1.2027 25 8 2.0459 1.2352 -2.3820 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.9125 2.8889 3.6041 30 1 3.4954 2.0749 3.5992 31 1 2.8049 -0.9548 4.9829 32 1 4.0700 0.3491 4.9630 33 1 4.8007 -1.9210 7.2817 34 1 3.9385 -2.6229 8.6714 35 1 3.0220 -1.9881 7.2836 36 1 5.0647 0.7018 9.9095 37 1 5.1306 -1.0520 10.2051 38 1 5.9932 -0.3506 8.8148 39 1 1.7177 -0.5112 8.8199 40 1 2.6336 -1.1464 10.2075 41 1 2.5673 0.6079 9.9126 42 1 3.0179 2.5576 6.1008 43 1 1.3117 2.1797 6.5979 44 1 3.2470 3.5479 2.1321 45 1 4.9576 4.9370 0.5121 46 1 2.3098 6.1039 0.2743 47 1 4.9572 6.8964 -1.7701 48 1 5.1026 4.5737 -2.4799 49 1 3.2386 3.5520 -2.1324 50 1 2.7411 0.6574 -2.7252 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_18340330_14598386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:06:08 Heat of formation + Delta-G solvation = -141.525203 kcal Electronic energy + Delta-G solvation = -30388.806792 eV Core-core repulsion = 26157.007605 eV Total energy + Delta-G solvation = -4231.799187 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86031 -40.95920 -39.64684 -38.94421 -38.30580 -37.92917 -36.46039 -33.91484 -31.82306 -30.58812 -29.47784 -28.41904 -28.32338 -28.18591 -26.66793 -26.10275 -24.41099 -23.02231 -22.63111 -20.87137 -20.65946 -19.81308 -18.60110 -18.42298 -18.04506 -17.69605 -17.44610 -17.12023 -16.63442 -16.35883 -16.17191 -16.04854 -15.87293 -15.65154 -15.52487 -15.23618 -15.03576 -14.58429 -14.41575 -14.20109 -13.78343 -13.48789 -13.44055 -13.32935 -13.29165 -13.04974 -12.95246 -12.82951 -12.69716 -12.66451 -12.57163 -12.35961 -12.18598 -11.99447 -11.94945 -11.76744 -11.67367 -11.39380 -11.22133 -10.77989 -10.55023 -10.36608 -9.66330 -9.25175 -5.06532 -0.10300 0.16296 1.21681 1.58580 1.90974 1.92625 2.23193 2.70147 2.83829 3.16729 3.34473 3.41789 3.51795 3.59509 3.72278 3.76842 3.86364 3.93544 3.93994 3.97352 4.04440 4.07598 4.16307 4.21463 4.33316 4.39093 4.44147 4.47633 4.49047 4.52395 4.53996 4.62211 4.71597 4.73510 4.75618 4.79075 4.81507 4.86449 4.89261 4.90424 4.97901 5.07623 5.08430 5.12146 5.24057 5.26633 5.28475 5.32829 5.37432 6.09185 6.39280 6.43284 6.48337 6.72672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.040 3.960 4 C 0.132 3.868 5 O -0.298 6.298 6 C 0.069 3.931 7 C -0.109 4.109 8 H 0.104 0.896 9 C -0.147 4.147 10 C 0.062 3.938 11 H 0.092 0.908 12 O -0.361 6.361 13 C 0.105 3.895 14 C -0.176 4.176 15 C -0.139 4.139 16 C -0.179 4.179 17 C -0.126 4.126 18 C -0.182 4.182 19 C -0.068 4.068 20 C -0.069 4.069 21 O -0.538 6.538 22 Si 0.692 3.308 23 C -0.171 4.171 24 C 0.136 3.864 25 O -0.486 6.486 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.140 0.860 45 H 0.117 0.883 46 H 0.380 0.620 47 H -0.252 1.252 48 H -0.256 1.256 49 H 0.140 0.860 50 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -0.255 0.561 2.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.236 6.236 3 C -0.006 4.006 4 C 0.085 3.915 5 O -0.211 6.211 6 C -0.006 4.006 7 C -0.127 4.127 8 H 0.122 0.878 9 C -0.185 4.185 10 C 0.004 3.996 11 H 0.110 0.890 12 O -0.281 6.281 13 C 0.066 3.934 14 C -0.234 4.234 15 C -0.196 4.196 16 C -0.236 4.236 17 C -0.164 4.164 18 C -0.201 4.201 19 C -0.069 4.069 20 C -0.180 4.180 21 O -0.343 6.343 22 Si 0.593 3.407 23 C -0.189 4.189 24 C 0.091 3.909 25 O -0.297 6.297 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.157 0.843 45 H 0.135 0.865 46 H 0.228 0.772 47 H -0.177 1.177 48 H -0.181 1.181 49 H 0.157 0.843 50 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.381 0.078 0.430 1.448 hybrid contribution 0.317 -0.538 0.506 0.804 sum -1.063 -0.460 0.935 1.489 Atomic orbital electron populations 1.23015 0.78620 1.03316 1.00666 1.86076 1.20181 1.23280 1.94059 1.18368 1.04126 0.88661 0.89410 1.19241 0.95364 0.91099 0.85771 1.86171 1.76933 1.46280 1.11746 1.22908 1.00169 0.95563 0.81975 1.22304 1.00803 0.97731 0.91863 0.87772 1.23614 0.99522 0.99639 0.95723 1.23565 0.89526 0.97364 0.89117 0.88988 1.88035 1.44702 1.51569 1.43748 1.21543 0.95974 0.87836 0.88077 1.22472 1.02763 0.96759 1.01401 1.21770 0.96251 1.02673 0.98926 1.22472 0.97694 1.03078 1.00397 1.23232 1.02089 0.97315 0.93764 1.21050 1.04464 0.94975 0.99562 1.20010 0.97906 0.96664 0.92298 1.25107 0.96187 0.86558 1.10160 1.86508 1.30987 1.59843 1.56982 0.94522 0.89118 0.80450 0.76579 1.21119 1.03132 0.96663 0.98013 1.18319 0.96630 0.91477 0.84523 1.84777 1.45818 1.64676 1.34447 0.88774 0.93601 0.93227 0.91428 0.91466 0.90872 0.89116 0.91672 0.91522 0.92270 0.91762 0.91051 0.91766 0.92230 0.91340 0.91593 0.88770 0.90349 0.84265 0.86525 0.77206 1.17732 1.18132 0.84306 0.74429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.05 11.13 101.05 1.13 1.18 16 2 O -0.32 -1.26 9.99 -45.27 -0.45 -1.71 16 3 C 0.04 0.13 5.75 -39.03 -0.22 -0.10 16 4 C 0.13 0.35 6.70 -39.15 -0.26 0.09 16 5 O -0.30 -0.80 9.92 -34.32 -0.34 -1.14 16 6 C 0.07 0.01 4.58 37.16 0.17 0.18 16 7 C -0.11 0.05 4.01 -89.80 -0.36 -0.31 16 8 H 0.10 -0.06 8.14 -51.94 -0.42 -0.49 16 9 C -0.15 -0.03 7.47 -25.92 -0.19 -0.23 16 10 C 0.06 0.00 2.82 -25.92 -0.07 -0.07 16 11 H 0.09 -0.07 5.54 -51.93 -0.29 -0.35 16 12 O -0.36 -0.67 10.00 -35.23 -0.35 -1.02 16 13 C 0.10 0.04 1.11 -90.62 -0.10 -0.06 16 14 C -0.18 0.05 8.38 37.15 0.31 0.36 16 15 C -0.14 0.01 8.84 37.16 0.33 0.34 16 16 C -0.18 0.10 8.38 37.16 0.31 0.42 16 17 C -0.13 0.09 7.47 -25.92 -0.19 -0.10 16 18 C -0.18 -0.23 8.60 -39.43 -0.34 -0.57 16 19 C -0.07 -0.03 5.39 -104.63 -0.56 -0.60 16 20 C -0.07 0.03 2.82 36.01 0.10 0.13 16 21 O -0.54 0.08 12.76 -35.23 -0.45 -0.37 16 22 Si 0.69 -0.77 29.78 -169.99 -5.06 -5.84 16 23 C -0.17 -0.08 8.60 -39.43 -0.34 -0.42 16 24 C 0.14 0.25 6.71 -39.15 -0.26 -0.02 16 25 O -0.49 -0.43 13.29 -34.30 -0.46 -0.88 16 26 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.05 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 -0.05 7.66 -51.93 -0.40 -0.45 16 30 H 0.07 -0.01 7.36 -51.93 -0.38 -0.39 16 31 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.09 0.09 7.90 -51.93 -0.41 -0.32 16 33 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.06 -0.02 7.02 -51.93 -0.36 -0.39 16 36 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.06 -0.06 6.24 -51.93 -0.32 -0.38 16 40 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 42 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 43 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 44 H 0.14 0.05 6.29 -52.48 -0.33 -0.28 16 45 H 0.12 -0.02 7.96 -51.93 -0.41 -0.44 16 46 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 47 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 48 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 49 H 0.14 -0.17 4.87 -52.49 -0.26 -0.43 16 50 H 0.40 -1.25 9.06 45.56 0.41 -0.84 16 LS Contribution 401.27 15.07 6.05 6.05 Total: 0.00 -7.11 401.27 -9.10 -16.21 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -7.47 Total: -11.53 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.56 Total: 0.23 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -2.05 Total: -5.12 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.06 Total: -5.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -7.11 -9.10 -16.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_14598386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.311 kcal (2) G-P(sol) polarization free energy of solvation -7.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds