Wall clock time and date at job start Mon Mar 8 2021 09:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36087 * 116.99531 * 2 1 4 4 C 1.38959 * 120.08912 * 90.00523 * 3 2 1 5 5 O 1.35994 * 120.04619 * 0.02562 * 4 3 2 6 6 C 1.42897 * 117.00186 * 179.72440 * 5 4 3 7 7 C 1.53006 * 109.46881 * 179.97438 * 6 5 4 8 8 H 1.08989 * 112.84969 * 316.19620 * 7 6 5 9 9 C 1.53784 * 113.61171 * 87.50487 * 7 6 5 10 10 C 1.53779 * 87.07962 * 139.97968 * 9 7 6 11 11 H 1.09003 * 113.61800 * 89.11313 * 10 9 7 12 12 O 1.42898 * 113.68934 * 220.00756 * 10 9 7 13 13 C 1.42907 * 113.99946 * 247.53515 * 12 10 9 14 14 C 1.52994 * 109.47046 * 59.99665 * 13 12 10 15 15 C 1.53000 * 109.47371 * 179.97438 * 13 12 10 16 16 C 1.53007 * 109.46948 * 299.99809 * 13 12 10 17 17 C 1.53779 * 87.08153 * 334.56390 * 10 9 7 18 18 C 1.38684 * 119.90987 * 179.74205 * 4 3 2 19 19 C 1.38206 * 120.09091 * 0.25228 * 18 4 3 20 20 C 1.50705 * 119.91322 * 179.97438 * 19 18 4 21 21 O 1.42904 * 109.47154 * 300.00385 * 20 19 18 22 22 Si 1.86300 * 109.47244 * 180.02562 * 20 19 18 23 23 C 1.38253 * 120.18034 * 0.02562 * 19 18 4 24 24 C 1.38640 * 120.08625 * 359.97438 * 23 19 18 25 25 O 1.35997 * 120.04605 * 180.02562 * 24 23 19 26 26 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46893 * 299.99247 * 1 2 3 28 28 H 1.08999 * 109.47516 * 59.99940 * 1 2 3 29 29 H 1.08992 * 109.47198 * 59.99981 * 6 5 4 30 30 H 1.08997 * 109.46749 * 299.99743 * 6 5 4 31 31 H 1.09005 * 113.60951 * 254.52327 * 9 7 6 32 32 H 1.08996 * 113.61961 * 25.42950 * 9 7 6 33 33 H 1.09007 * 109.47222 * 60.00405 * 14 13 12 34 34 H 1.09002 * 109.47478 * 179.97438 * 14 13 12 35 35 H 1.09001 * 109.47258 * 300.00085 * 14 13 12 36 36 H 1.09002 * 109.46922 * 59.99333 * 15 13 12 37 37 H 1.08998 * 109.47287 * 179.97438 * 15 13 12 38 38 H 1.08999 * 109.46751 * 299.99911 * 15 13 12 39 39 H 1.09003 * 109.46796 * 59.99659 * 16 13 12 40 40 H 1.09002 * 109.46658 * 179.97438 * 16 13 12 41 41 H 1.08997 * 109.46950 * 299.99664 * 16 13 12 42 42 H 1.08999 * 113.61946 * 270.88503 * 17 10 9 43 43 H 1.09005 * 113.61625 * 139.98462 * 17 10 9 44 44 H 1.08004 * 119.95648 * 180.23103 * 18 4 3 45 45 H 1.09001 * 109.46848 * 59.99914 * 20 19 18 46 46 H 0.96697 * 113.99918 * 300.00178 * 21 20 19 47 47 H 1.48497 * 109.99719 * 179.97438 * 22 20 19 48 48 H 1.48493 * 109.99828 * 301.31822 * 22 20 19 49 49 H 1.07998 * 119.95777 * 180.02562 * 23 19 18 50 50 H 0.96696 * 114.00448 * 89.99257 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3631 1.8333 1.2023 5 8 2.0563 1.2296 2.3817 6 6 2.4163 1.9227 3.5783 7 6 1.9938 1.0951 4.7938 8 1 0.9942 0.6728 4.6915 9 6 3.0530 0.0744 5.2425 10 6 2.6886 0.4500 6.6885 11 1 1.8794 -0.1500 7.1048 12 8 3.8175 0.5403 7.5600 13 6 3.8568 -0.4727 8.5672 14 6 3.9080 -1.8502 7.9032 15 6 5.1008 -0.2796 9.4366 16 6 2.6038 -0.3734 9.4396 17 6 2.2267 1.8087 6.1360 18 6 2.9974 3.0666 1.1980 19 6 3.3103 3.6807 0.0000 20 6 3.9991 5.0211 0.0000 21 8 3.1803 5.9774 0.6761 22 14 4.2791 5.5754 -1.7564 23 6 2.9921 3.0691 -1.1984 24 6 2.3580 1.8363 -1.2027 25 8 2.0459 1.2352 -2.3820 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.9125 2.8889 3.6041 30 1 3.4954 2.0749 3.5992 31 1 2.8049 -0.9548 4.9829 32 1 4.0700 0.3491 4.9630 33 1 4.8007 -1.9210 7.2817 34 1 3.9385 -2.6229 8.6714 35 1 3.0220 -1.9881 7.2836 36 1 5.0647 0.7018 9.9095 37 1 5.1306 -1.0520 10.2051 38 1 5.9932 -0.3506 8.8148 39 1 1.7177 -0.5112 8.8199 40 1 2.6336 -1.1464 10.2075 41 1 2.5673 0.6079 9.9126 42 1 3.0179 2.5576 6.1008 43 1 1.3117 2.1797 6.5979 44 1 3.2470 3.5479 2.1321 45 1 4.9576 4.9370 0.5121 46 1 2.3098 6.1039 0.2743 47 1 4.9572 6.8964 -1.7701 48 1 5.1026 4.5737 -2.4799 49 1 3.2386 3.5520 -2.1324 50 1 2.7411 0.6574 -2.7252 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_14598386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:06:07 Heat of formation + Delta-G solvation = -139.183795 kcal Electronic energy + Delta-G solvation = -30388.705260 eV Core-core repulsion = 26157.007605 eV Total energy + Delta-G solvation = -4231.697656 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93910 -40.97471 -39.71576 -39.01540 -38.32896 -37.97238 -36.48259 -33.93708 -31.89048 -30.65119 -29.50121 -28.37683 -28.31532 -28.25740 -26.65800 -26.15145 -24.44901 -23.06250 -22.69430 -20.87334 -20.65833 -19.86823 -18.69308 -18.47172 -18.10995 -17.70445 -17.48207 -17.18699 -16.65397 -16.43566 -16.16656 -16.05176 -15.88625 -15.68834 -15.58237 -15.28059 -15.11034 -14.58089 -14.42082 -14.26177 -13.80114 -13.49379 -13.44174 -13.32306 -13.30331 -13.04426 -12.94528 -12.81616 -12.72165 -12.66950 -12.59784 -12.38387 -12.18314 -12.06107 -11.98890 -11.76925 -11.69292 -11.38482 -11.21426 -10.90506 -10.53132 -10.38849 -9.73904 -9.34961 -4.99811 -0.18313 0.08865 1.26324 1.61795 1.87001 1.93552 2.17094 2.70220 2.75857 3.15008 3.38579 3.42739 3.53565 3.62261 3.73737 3.78238 3.87149 3.88671 3.95150 3.96620 4.06234 4.09604 4.14128 4.20679 4.31590 4.39085 4.41155 4.42538 4.46136 4.51101 4.60060 4.65405 4.74128 4.74720 4.74995 4.76327 4.82555 4.83991 4.89344 4.91703 4.98004 5.02125 5.09852 5.13763 5.18303 5.27803 5.30845 5.33298 5.37501 6.01248 6.39044 6.42271 6.70811 6.73317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.339 6.339 3 C 0.017 3.983 4 C 0.120 3.880 5 O -0.314 6.314 6 C 0.068 3.932 7 C -0.102 4.102 8 H 0.107 0.893 9 C -0.149 4.149 10 C 0.061 3.939 11 H 0.101 0.899 12 O -0.381 6.381 13 C 0.098 3.902 14 C -0.174 4.174 15 C -0.140 4.140 16 C -0.177 4.177 17 C -0.121 4.121 18 C -0.184 4.184 19 C -0.064 4.064 20 C -0.073 4.073 21 O -0.551 6.551 22 Si 0.774 3.226 23 C -0.169 4.169 24 C 0.134 3.866 25 O -0.494 6.494 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.115 0.885 46 H 0.396 0.604 47 H -0.295 1.295 48 H -0.283 1.283 49 H 0.157 0.843 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 0.004 0.568 2.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C -0.028 4.028 4 C 0.074 3.926 5 O -0.228 6.228 6 C -0.007 4.007 7 C -0.120 4.120 8 H 0.126 0.874 9 C -0.187 4.187 10 C 0.003 3.997 11 H 0.119 0.881 12 O -0.301 6.301 13 C 0.059 3.941 14 C -0.231 4.231 15 C -0.197 4.197 16 C -0.234 4.234 17 C -0.158 4.158 18 C -0.203 4.203 19 C -0.065 4.065 20 C -0.182 4.182 21 O -0.359 6.359 22 Si 0.679 3.321 23 C -0.187 4.187 24 C 0.088 3.912 25 O -0.308 6.308 26 H 0.126 0.874 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.164 0.836 45 H 0.132 0.868 46 H 0.247 0.753 47 H -0.223 1.223 48 H -0.209 1.209 49 H 0.174 0.826 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.962 0.322 0.441 2.036 hybrid contribution 0.528 -0.610 0.494 0.946 sum -1.433 -0.288 0.936 1.736 Atomic orbital electron populations 1.23109 0.77749 1.04256 1.00614 1.86034 1.21259 1.24061 1.94212 1.18651 1.05063 0.88924 0.90211 1.19371 0.95920 0.91636 0.85712 1.86142 1.77232 1.47079 1.12317 1.23009 1.00314 0.95978 0.81397 1.22263 1.00589 0.97417 0.91766 0.87446 1.23586 0.99166 0.99673 0.96240 1.23656 0.89357 0.97996 0.88673 0.88126 1.88012 1.45524 1.52229 1.44309 1.21681 0.96566 0.87760 0.88069 1.22447 1.02350 0.96806 1.01539 1.21795 0.95869 1.02921 0.99082 1.22447 0.97314 1.03144 1.00471 1.23196 1.02418 0.96842 0.93367 1.21152 1.04315 0.94598 1.00233 1.20129 0.97418 0.96863 0.92067 1.25218 0.96060 0.86109 1.10856 1.86477 1.32158 1.59657 1.57581 0.93566 0.87507 0.76495 0.74514 1.21277 1.02507 0.96194 0.98720 1.18396 0.96496 0.91862 0.84413 1.84730 1.46939 1.65107 1.34020 0.87384 0.93721 0.93149 0.90412 0.91494 0.91193 0.90244 0.92600 0.90523 0.92163 0.92190 0.89721 0.92506 0.91820 0.90409 0.92050 0.89170 0.89157 0.83628 0.86781 0.75340 1.22255 1.20927 0.82592 0.72574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.12 11.13 113.37 1.26 1.39 16 2 O -0.34 -2.99 9.99 -70.39 -0.70 -3.69 16 3 C 0.02 0.12 5.75 22.63 0.13 0.25 16 4 C 0.12 0.74 6.70 22.55 0.15 0.89 16 5 O -0.31 -1.98 9.92 -79.53 -0.79 -2.77 16 6 C 0.07 0.06 4.58 71.98 0.33 0.39 16 7 C -0.10 0.06 4.01 -10.26 -0.04 0.02 16 8 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 9 C -0.15 -0.20 7.47 31.12 0.23 0.03 16 10 C 0.06 0.03 2.82 31.12 0.09 0.12 16 11 H 0.10 -0.16 5.54 -2.39 -0.01 -0.17 16 12 O -0.38 -1.64 10.00 -148.98 -1.49 -3.13 16 13 C 0.10 0.09 1.11 -10.79 -0.01 0.08 16 14 C -0.17 0.05 8.38 71.98 0.60 0.65 16 15 C -0.14 -0.02 8.84 71.98 0.64 0.61 16 16 C -0.18 0.26 8.38 71.98 0.60 0.87 16 17 C -0.12 0.18 7.47 31.12 0.23 0.41 16 18 C -0.18 -0.51 8.60 22.37 0.19 -0.32 16 19 C -0.06 -0.04 5.39 -19.87 -0.11 -0.15 16 20 C -0.07 0.10 2.82 71.24 0.20 0.30 16 21 O -0.55 0.57 12.76 -148.98 -1.90 -1.33 16 22 Si 0.77 -2.11 29.78 68.60 2.04 -0.07 16 23 C -0.17 -0.08 8.60 22.37 0.19 0.11 16 24 C 0.13 0.50 6.71 22.55 0.15 0.65 16 25 O -0.49 -0.81 13.29 -79.58 -1.06 -1.87 16 26 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.04 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.08 -0.11 7.66 -2.39 -0.02 -0.13 16 30 H 0.07 0.04 7.36 -2.39 -0.02 0.02 16 31 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.08 0.28 7.90 -2.39 -0.02 0.27 16 33 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 -0.04 7.02 -2.39 -0.02 -0.05 16 36 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.06 -0.15 6.24 -2.39 -0.01 -0.17 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.09 -0.04 8.10 -2.39 -0.02 -0.06 16 43 H 0.09 -0.34 8.14 -2.38 -0.02 -0.36 16 44 H 0.15 0.13 6.29 -2.91 -0.02 0.11 16 45 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 46 H 0.40 -3.47 8.70 -74.06 -0.64 -4.11 16 47 H -0.29 -1.31 7.11 99.48 0.71 -0.60 16 48 H -0.28 -0.47 7.11 99.48 0.71 0.23 16 49 H 0.16 -0.57 4.87 -2.91 -0.01 -0.58 16 50 H 0.41 -2.64 9.06 -74.06 -0.67 -3.32 16 Total: 0.00 -16.67 401.27 0.62 -16.04 By element: Atomic # 1 Polarization: -9.16 SS G_CDS: -0.32 Total: -9.48 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.85 Total: 6.30 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -5.94 Total: -12.79 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.04 Total: -0.07 kcal Total: -16.67 0.62 -16.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_14598386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.139 kcal (2) G-P(sol) polarization free energy of solvation -16.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds