Wall clock time and date at job start Mon Mar 8 2021 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36095 * 116.99780 * 2 1 4 4 C 1.38955 * 120.08609 * 90.00085 * 3 2 1 5 5 O 1.36001 * 120.04937 * 0.02562 * 4 3 2 6 6 C 1.42895 * 117.00183 * 179.72185 * 5 4 3 7 7 C 1.53001 * 109.46905 * 180.02562 * 6 5 4 8 8 H 1.08997 * 112.91079 * 43.75197 * 7 6 5 9 9 C 1.53779 * 113.61604 * 175.00037 * 7 6 5 10 10 C 1.53785 * 87.08248 * 89.11346 * 9 7 6 11 11 O 1.42904 * 113.61565 * 270.88610 * 10 9 7 12 12 C 1.42898 * 114.00114 * 294.91505 * 11 10 9 13 13 C 1.52994 * 113.61431 * 139.98218 * 10 9 7 14 14 F 1.39899 * 109.47172 * 54.62297 * 13 10 9 15 15 F 1.39899 * 109.47254 * 174.61979 * 13 10 9 16 16 F 1.39899 * 109.47329 * 294.62232 * 13 10 9 17 17 C 1.53780 * 87.07764 * 25.43616 * 10 9 7 18 18 C 1.38694 * 119.90822 * 179.74296 * 4 3 2 19 19 C 1.38197 * 120.08926 * 0.25695 * 18 4 3 20 20 C 1.50699 * 119.91058 * 179.97438 * 19 18 4 21 21 O 1.42899 * 109.47069 * 65.00243 * 20 19 18 22 22 Si 1.86307 * 109.47187 * 184.99883 * 20 19 18 23 23 C 1.38255 * 120.18144 * 359.97438 * 19 18 4 24 24 C 1.38645 * 120.08728 * 0.02562 * 23 19 18 25 25 O 1.35994 * 120.04586 * 180.02562 * 24 23 19 26 26 H 1.08996 * 109.47324 * 299.99870 * 1 2 3 27 27 H 1.09004 * 109.47472 * 59.99971 * 1 2 3 28 28 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47448 * 60.00164 * 6 5 4 30 30 H 1.09000 * 109.47425 * 300.00050 * 6 5 4 31 31 H 1.09004 * 113.61452 * 334.56949 * 9 7 6 32 32 H 1.09000 * 113.61773 * 203.66064 * 9 7 6 33 33 H 1.08998 * 109.47227 * 62.56584 * 12 11 10 34 34 H 1.08994 * 109.47534 * 182.57226 * 12 11 10 35 35 H 1.09005 * 109.46763 * 302.57023 * 12 11 10 36 36 H 1.08996 * 113.61968 * 89.12045 * 17 10 9 37 37 H 1.09010 * 113.61276 * 220.01919 * 17 10 9 38 38 H 1.08004 * 119.95250 * 180.27752 * 18 4 3 39 39 H 1.08998 * 109.47272 * 305.00044 * 20 19 18 40 40 H 0.96703 * 114.00438 * 59.99749 * 21 20 19 41 41 H 1.48498 * 109.99590 * 58.68478 * 22 20 19 42 42 H 1.48497 * 109.99868 * 180.02562 * 22 20 19 43 43 H 1.07999 * 119.95374 * 179.97438 * 23 19 18 44 44 H 0.96704 * 114.00131 * 89.99628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3630 1.8333 1.2023 5 8 2.0561 1.2296 2.3818 6 6 2.4161 1.9228 3.5783 7 6 1.9946 1.0947 4.7939 8 1 2.2308 0.0358 4.6885 9 6 2.4459 1.6958 6.1354 10 6 1.1212 2.4770 6.1413 11 8 1.2020 3.7458 5.4889 12 6 2.0694 4.6784 6.1369 13 6 0.4631 2.5570 7.5201 14 9 1.3738 3.0848 8.4416 15 9 -0.6633 3.3839 7.4519 16 9 0.0770 1.2756 7.9277 17 6 0.5504 1.3613 5.2501 18 6 2.9974 3.0666 1.1980 19 6 3.3103 3.6807 0.0002 20 6 3.9991 5.0210 0.0002 21 8 5.3039 4.8860 0.5670 22 14 4.1437 5.6450 -1.7493 23 6 2.9930 3.0687 -1.1983 24 6 2.3588 1.8358 -1.2026 25 8 2.0476 1.2343 -2.3820 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9124 2.8890 3.6042 30 1 3.4953 2.0750 3.5994 31 1 3.3274 2.3319 6.0543 32 1 2.5240 0.9627 6.9382 33 1 3.0881 4.2907 6.1325 34 1 2.0407 5.6303 5.6068 35 1 1.7411 4.8255 7.1659 36 1 0.1103 0.5367 5.8107 37 1 -0.0984 1.7272 4.4542 38 1 3.2476 3.5476 2.1322 39 1 3.4175 5.7284 0.5913 40 1 5.8778 4.2703 0.0910 41 1 2.7952 5.7595 -2.3607 42 1 4.8219 6.9660 -1.7629 43 1 3.2388 3.5521 -2.1323 44 1 2.7432 0.6563 -2.7243 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_18340330_17321602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:43:50 Heat of formation + Delta-G solvation = -271.752128 kcal Electronic energy + Delta-G solvation = -35088.687848 eV Core-core repulsion = 29753.954909 eV Total energy + Delta-G solvation = -5334.732939 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.20636 -48.75245 -48.63602 -42.03304 -41.42545 -39.52257 -38.96367 -38.08820 -37.26297 -36.45449 -31.96022 -30.75453 -30.31462 -28.37969 -28.21039 -27.51500 -26.94263 -26.03483 -24.01115 -23.12646 -22.64782 -20.73063 -20.01668 -19.69101 -19.48951 -19.28112 -18.59648 -18.31992 -18.07200 -17.48702 -17.40259 -17.04822 -16.62204 -16.39282 -16.25193 -16.03334 -15.80255 -15.73786 -15.57202 -15.52378 -15.46300 -15.18062 -15.12090 -14.88515 -14.82468 -14.69235 -14.35988 -14.11471 -13.96110 -13.48232 -13.40570 -13.29724 -13.05716 -12.84726 -12.65341 -12.59029 -12.40985 -12.15516 -12.01799 -11.86422 -11.80965 -11.73616 -10.93251 -10.80181 -10.55211 -9.69523 -9.28527 -5.09538 -0.12657 0.13633 1.19858 1.51252 1.59776 1.80977 1.92167 1.94711 2.18153 2.49297 2.58249 2.78426 2.82769 3.13808 3.19548 3.30895 3.33014 3.41627 3.51903 3.67599 3.90682 3.93432 4.03087 4.07665 4.09524 4.19842 4.20391 4.28114 4.30096 4.36009 4.41556 4.45527 4.47024 4.50723 4.52360 4.60614 4.65814 4.80734 4.84697 4.87841 5.06385 5.21600 5.32400 5.55556 6.04694 6.41311 6.45501 6.70697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.041 3.959 4 C 0.133 3.867 5 O -0.298 6.298 6 C 0.067 3.933 7 C -0.098 4.098 8 H 0.108 0.892 9 C -0.142 4.142 10 C 0.038 3.962 11 O -0.333 6.333 12 C 0.009 3.991 13 C 0.437 3.563 14 F -0.181 7.181 15 F -0.174 7.174 16 F -0.174 7.174 17 C -0.112 4.112 18 C -0.180 4.180 19 C -0.068 4.068 20 C -0.068 4.068 21 O -0.537 6.537 22 Si 0.687 3.313 23 C -0.168 4.168 24 C 0.136 3.864 25 O -0.486 6.486 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.380 0.620 41 H -0.255 1.255 42 H -0.252 1.252 43 H 0.140 0.860 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -1.294 -1.526 4.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.236 6.236 3 C -0.004 4.004 4 C 0.086 3.914 5 O -0.211 6.211 6 C -0.008 4.008 7 C -0.116 4.116 8 H 0.126 0.874 9 C -0.180 4.180 10 C -0.004 4.004 11 O -0.251 6.251 12 C -0.087 4.087 13 C 0.383 3.617 14 F -0.163 7.163 15 F -0.155 7.155 16 F -0.156 7.156 17 C -0.149 4.149 18 C -0.198 4.198 19 C -0.069 4.069 20 C -0.179 4.179 21 O -0.343 6.343 22 Si 0.589 3.411 23 C -0.187 4.187 24 C 0.091 3.909 25 O -0.297 6.297 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.228 0.772 41 H -0.180 1.180 42 H -0.177 1.177 43 H 0.157 0.843 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.449 -0.227 -1.706 2.993 hybrid contribution -0.052 0.169 1.205 1.218 sum 2.396 -0.058 -0.500 2.449 Atomic orbital electron populations 1.23018 0.78586 1.03364 1.00683 1.86074 1.20187 1.23234 1.94056 1.18358 1.04045 0.88676 0.89370 1.19204 0.95444 0.91157 0.85575 1.86123 1.77081 1.46158 1.11700 1.22815 1.00428 0.95993 0.81582 1.22059 0.95806 1.01758 0.91969 0.87389 1.23599 0.96098 0.99781 0.98488 1.24050 0.99426 0.88160 0.88773 1.88083 1.66997 1.20945 1.49048 1.23162 0.93690 0.92988 0.98852 1.21161 0.77627 0.73989 0.88953 1.93188 1.66848 1.86410 1.69827 1.93222 1.53292 1.72425 1.96587 1.93182 1.91499 1.39136 1.91749 1.23272 0.97879 0.94776 0.98971 1.21047 1.03989 0.95313 0.99497 1.19997 0.97890 0.96725 0.92303 1.25080 0.85536 0.96045 1.11253 1.86512 1.22346 1.68037 1.57395 0.94674 0.84990 0.83902 0.77555 1.21102 1.03218 0.96438 0.97913 1.18314 0.96645 0.91450 0.84541 1.84793 1.45858 1.64648 1.34416 0.93572 0.93296 0.88684 0.89757 0.91226 0.88655 0.86830 0.92596 0.87981 0.92630 0.86440 0.88380 0.84339 0.86600 0.77221 1.17996 1.17721 0.84275 0.74355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.04 11.13 101.05 1.13 1.17 16 2 O -0.32 -1.08 9.99 -45.30 -0.45 -1.53 16 3 C 0.04 0.11 5.75 -39.03 -0.22 -0.12 16 4 C 0.13 0.27 6.70 -39.15 -0.26 0.01 16 5 O -0.30 -0.53 9.92 -34.34 -0.34 -0.87 16 6 C 0.07 -0.05 4.32 37.16 0.16 0.11 16 7 C -0.10 0.18 4.20 -89.81 -0.38 -0.19 16 8 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 9 C -0.14 0.36 6.52 -25.92 -0.17 0.19 16 10 C 0.04 -0.03 0.85 -89.81 -0.08 -0.10 16 11 O -0.33 -0.01 8.35 -35.23 -0.29 -0.30 16 12 C 0.01 -0.01 10.44 101.05 1.05 1.04 16 13 C 0.44 0.42 2.52 37.15 0.09 0.51 16 14 F -0.18 -0.22 15.26 2.25 0.03 -0.19 16 15 F -0.17 -0.48 17.09 2.25 0.04 -0.44 16 16 F -0.17 -0.18 15.82 2.25 0.04 -0.15 16 17 C -0.11 0.15 6.89 -25.92 -0.18 -0.03 16 18 C -0.18 -0.12 8.67 -39.43 -0.34 -0.46 16 19 C -0.07 0.00 5.35 -104.63 -0.56 -0.56 16 20 C -0.07 0.06 2.80 36.01 0.10 0.16 16 21 O -0.54 0.44 12.83 -35.23 -0.45 -0.01 16 22 Si 0.69 -0.96 29.79 -169.99 -5.06 -6.02 16 23 C -0.17 0.01 8.60 -39.43 -0.34 -0.33 16 24 C 0.14 0.18 6.71 -39.15 -0.26 -0.08 16 25 O -0.49 -0.21 13.29 -34.29 -0.46 -0.66 16 26 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.08 -0.04 5.64 -51.93 -0.29 -0.33 16 30 H 0.07 -0.12 7.66 -51.93 -0.40 -0.52 16 31 H 0.09 -0.32 6.69 -51.93 -0.35 -0.67 16 32 H 0.11 -0.38 8.07 -51.93 -0.42 -0.80 16 33 H 0.06 -0.17 6.75 -51.93 -0.35 -0.52 16 34 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 35 H 0.06 -0.05 6.26 -51.93 -0.33 -0.38 16 36 H 0.12 -0.26 7.00 -51.93 -0.36 -0.62 16 37 H 0.10 -0.06 8.10 -51.92 -0.42 -0.48 16 38 H 0.14 -0.04 6.29 -52.48 -0.33 -0.37 16 39 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 40 H 0.38 -1.75 8.70 45.56 0.40 -1.35 16 41 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 42 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 43 H 0.14 -0.27 4.89 -52.49 -0.26 -0.52 16 44 H 0.40 -1.63 9.06 45.56 0.41 -1.21 16 LS Contribution 371.80 15.07 5.60 5.60 Total: 0.00 -8.04 371.80 -6.02 -14.07 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: -4.42 Total: -10.81 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.26 Total: 1.32 kcal Atomic # 8 Polarization: -1.38 SS G_CDS: -1.99 Total: -3.38 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.11 Total: -0.78 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.06 Total: -6.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -8.04 -6.02 -14.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_17321602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -257.685 kcal (2) G-P(sol) polarization free energy of solvation -8.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds