Wall clock time and date at job start Mon Mar 8 2021 10:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36095 * 116.99780 * 2 1 4 4 C 1.38955 * 120.08609 * 90.00085 * 3 2 1 5 5 O 1.36001 * 120.04937 * 0.02562 * 4 3 2 6 6 C 1.42895 * 117.00183 * 179.72185 * 5 4 3 7 7 C 1.53001 * 109.46905 * 180.02562 * 6 5 4 8 8 H 1.08997 * 112.91079 * 43.75197 * 7 6 5 9 9 C 1.53779 * 113.61604 * 175.00037 * 7 6 5 10 10 C 1.53785 * 87.08248 * 89.11346 * 9 7 6 11 11 O 1.42904 * 113.61565 * 270.88610 * 10 9 7 12 12 C 1.42898 * 114.00114 * 294.91505 * 11 10 9 13 13 C 1.52994 * 113.61431 * 139.98218 * 10 9 7 14 14 F 1.39899 * 109.47172 * 54.62297 * 13 10 9 15 15 F 1.39899 * 109.47254 * 174.61979 * 13 10 9 16 16 F 1.39899 * 109.47329 * 294.62232 * 13 10 9 17 17 C 1.53780 * 87.07764 * 25.43616 * 10 9 7 18 18 C 1.38694 * 119.90822 * 179.74296 * 4 3 2 19 19 C 1.38197 * 120.08926 * 0.25695 * 18 4 3 20 20 C 1.50699 * 119.91058 * 179.97438 * 19 18 4 21 21 O 1.42899 * 109.47069 * 65.00243 * 20 19 18 22 22 Si 1.86307 * 109.47187 * 184.99883 * 20 19 18 23 23 C 1.38255 * 120.18144 * 359.97438 * 19 18 4 24 24 C 1.38645 * 120.08728 * 0.02562 * 23 19 18 25 25 O 1.35994 * 120.04586 * 180.02562 * 24 23 19 26 26 H 1.08996 * 109.47324 * 299.99870 * 1 2 3 27 27 H 1.09004 * 109.47472 * 59.99971 * 1 2 3 28 28 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47448 * 60.00164 * 6 5 4 30 30 H 1.09000 * 109.47425 * 300.00050 * 6 5 4 31 31 H 1.09004 * 113.61452 * 334.56949 * 9 7 6 32 32 H 1.09000 * 113.61773 * 203.66064 * 9 7 6 33 33 H 1.08998 * 109.47227 * 62.56584 * 12 11 10 34 34 H 1.08994 * 109.47534 * 182.57226 * 12 11 10 35 35 H 1.09005 * 109.46763 * 302.57023 * 12 11 10 36 36 H 1.08996 * 113.61968 * 89.12045 * 17 10 9 37 37 H 1.09010 * 113.61276 * 220.01919 * 17 10 9 38 38 H 1.08004 * 119.95250 * 180.27752 * 18 4 3 39 39 H 1.08998 * 109.47272 * 305.00044 * 20 19 18 40 40 H 0.96703 * 114.00438 * 59.99749 * 21 20 19 41 41 H 1.48498 * 109.99590 * 58.68478 * 22 20 19 42 42 H 1.48497 * 109.99868 * 180.02562 * 22 20 19 43 43 H 1.07999 * 119.95374 * 179.97438 * 23 19 18 44 44 H 0.96704 * 114.00131 * 89.99628 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3630 1.8333 1.2023 5 8 2.0561 1.2296 2.3818 6 6 2.4161 1.9228 3.5783 7 6 1.9946 1.0947 4.7939 8 1 2.2308 0.0358 4.6885 9 6 2.4459 1.6958 6.1354 10 6 1.1212 2.4770 6.1413 11 8 1.2020 3.7458 5.4889 12 6 2.0694 4.6784 6.1369 13 6 0.4631 2.5570 7.5201 14 9 1.3738 3.0848 8.4416 15 9 -0.6633 3.3839 7.4519 16 9 0.0770 1.2756 7.9277 17 6 0.5504 1.3613 5.2501 18 6 2.9974 3.0666 1.1980 19 6 3.3103 3.6807 0.0002 20 6 3.9991 5.0210 0.0002 21 8 5.3039 4.8860 0.5670 22 14 4.1437 5.6450 -1.7493 23 6 2.9930 3.0687 -1.1983 24 6 2.3588 1.8358 -1.2026 25 8 2.0476 1.2343 -2.3820 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9124 2.8890 3.6042 30 1 3.4953 2.0750 3.5994 31 1 3.3274 2.3319 6.0543 32 1 2.5240 0.9627 6.9382 33 1 3.0881 4.2907 6.1325 34 1 2.0407 5.6303 5.6068 35 1 1.7411 4.8255 7.1659 36 1 0.1103 0.5367 5.8107 37 1 -0.0984 1.7272 4.4542 38 1 3.2476 3.5476 2.1322 39 1 3.4175 5.7284 0.5913 40 1 5.8778 4.2703 0.0910 41 1 2.7952 5.7595 -2.3607 42 1 4.8219 6.9660 -1.7629 43 1 3.2388 3.5521 -2.1323 44 1 2.7432 0.6563 -2.7243 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_17321602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:43:49 Heat of formation + Delta-G solvation = -271.552194 kcal Electronic energy + Delta-G solvation = -35088.679178 eV Core-core repulsion = 29753.954909 eV Total energy + Delta-G solvation = -5334.724269 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.29359 -48.82527 -48.76389 -42.01773 -41.36676 -39.53184 -38.98937 -38.09509 -37.17345 -36.41779 -31.96480 -30.74710 -30.29514 -28.26972 -28.22714 -27.50530 -26.79539 -26.04190 -24.00904 -23.10046 -22.66251 -20.66324 -20.01659 -19.70281 -19.57156 -19.29260 -18.63634 -18.31801 -18.07592 -17.44179 -17.34667 -17.04377 -16.53365 -16.39322 -16.22504 -16.00128 -15.76583 -15.69207 -15.66486 -15.58368 -15.47216 -15.22194 -15.20905 -14.98672 -14.93268 -14.69528 -14.34152 -14.12496 -13.86827 -13.43577 -13.30389 -13.23192 -12.99151 -12.75044 -12.64233 -12.58820 -12.34117 -12.09408 -12.04198 -11.82479 -11.74618 -11.64138 -10.90592 -10.83625 -10.49195 -9.72321 -9.32521 -5.01274 -0.15840 0.11692 1.27171 1.49690 1.64335 1.85058 1.95875 2.05114 2.16757 2.52720 2.59308 2.77623 2.85990 3.16669 3.27315 3.35182 3.41951 3.46665 3.61067 3.77548 3.89478 3.98050 4.15453 4.21270 4.23268 4.27696 4.33570 4.35364 4.40971 4.41535 4.47096 4.47511 4.48656 4.61998 4.66790 4.75439 4.76652 4.78929 4.86896 4.98708 5.05261 5.20835 5.36716 5.67466 6.02742 6.44677 6.74559 6.78181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.016 3.984 4 C 0.123 3.877 5 O -0.312 6.312 6 C 0.066 3.934 7 C -0.093 4.093 8 H 0.113 0.887 9 C -0.132 4.132 10 C 0.036 3.964 11 O -0.346 6.346 12 C 0.004 3.996 13 C 0.433 3.567 14 F -0.184 7.184 15 F -0.189 7.189 16 F -0.176 7.176 17 C -0.114 4.114 18 C -0.182 4.182 19 C -0.065 4.065 20 C -0.069 4.069 21 O -0.549 6.549 22 Si 0.772 3.228 23 C -0.168 4.168 24 C 0.134 3.866 25 O -0.497 6.497 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.046 0.954 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.397 0.603 41 H -0.291 1.291 42 H -0.294 1.294 43 H 0.157 0.843 44 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -1.459 -1.673 5.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.252 6.252 3 C -0.029 4.029 4 C 0.076 3.924 5 O -0.226 6.226 6 C -0.009 4.009 7 C -0.111 4.111 8 H 0.132 0.868 9 C -0.169 4.169 10 C -0.006 4.006 11 O -0.264 6.264 12 C -0.092 4.092 13 C 0.378 3.622 14 F -0.165 7.165 15 F -0.170 7.170 16 F -0.157 7.157 17 C -0.151 4.151 18 C -0.201 4.201 19 C -0.066 4.066 20 C -0.179 4.179 21 O -0.357 6.357 22 Si 0.678 3.322 23 C -0.186 4.186 24 C 0.088 3.912 25 O -0.311 6.311 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.143 0.857 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.247 0.753 41 H -0.218 1.218 42 H -0.222 1.222 43 H 0.174 0.826 44 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 3.576 -0.426 -1.849 4.048 hybrid contribution -0.411 0.262 1.250 1.342 sum 3.165 -0.165 -0.599 3.226 Atomic orbital electron populations 1.23093 0.77998 1.04286 1.00355 1.86037 1.20977 1.24026 1.94195 1.18641 1.05033 0.88990 0.90208 1.19326 0.95830 0.91655 0.85585 1.86100 1.77381 1.46843 1.12243 1.22924 1.01040 0.95823 0.81090 1.22016 0.95300 1.01939 0.91853 0.86843 1.23628 0.95447 0.99655 0.98193 1.24175 1.00520 0.88225 0.87704 1.88071 1.67579 1.21443 1.49326 1.23291 0.94256 0.93271 0.98356 1.21511 0.77266 0.73610 0.89781 1.93178 1.66779 1.86461 1.70084 1.93187 1.54202 1.72923 1.96686 1.93172 1.91542 1.39152 1.91870 1.23331 0.98232 0.94856 0.98697 1.21160 1.03827 0.94928 1.00170 1.20116 0.97460 0.96870 0.92123 1.25134 0.85675 0.95472 1.11612 1.86481 1.22387 1.68751 1.58057 0.93698 0.81497 0.81339 0.75623 1.21263 1.02720 0.95959 0.98652 1.18405 0.96501 0.91857 0.84444 1.84744 1.47135 1.65145 1.34048 0.93881 0.93594 0.87175 0.90224 0.90116 0.87419 0.85736 0.90973 0.87148 0.93528 0.85701 0.89443 0.83530 0.86870 0.75261 1.21831 1.22178 0.82571 0.72274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.12 11.13 113.37 1.26 1.38 16 2 O -0.34 -2.57 9.99 -70.49 -0.70 -3.27 16 3 C 0.02 0.10 5.75 22.62 0.13 0.23 16 4 C 0.12 0.56 6.70 22.55 0.15 0.71 16 5 O -0.31 -1.29 9.92 -79.62 -0.79 -2.08 16 6 C 0.07 -0.11 4.32 71.98 0.31 0.21 16 7 C -0.09 0.37 4.20 -10.27 -0.04 0.33 16 8 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 9 C -0.13 0.78 6.52 31.12 0.20 0.98 16 10 C 0.04 -0.04 0.85 -10.27 -0.01 -0.05 16 11 O -0.35 -0.11 8.35 -148.98 -1.24 -1.35 16 12 C 0.00 -0.01 10.44 113.37 1.18 1.17 16 13 C 0.43 1.02 2.52 71.98 0.18 1.20 16 14 F -0.18 -0.49 15.26 44.97 0.69 0.20 16 15 F -0.19 -1.24 17.09 44.97 0.77 -0.48 16 16 F -0.18 -0.42 15.82 44.97 0.71 0.29 16 17 C -0.11 0.26 6.89 31.12 0.21 0.47 16 18 C -0.18 -0.23 8.67 22.37 0.19 -0.04 16 19 C -0.06 0.03 5.35 -19.87 -0.11 -0.07 16 20 C -0.07 0.17 2.80 71.24 0.20 0.37 16 21 O -0.55 1.52 12.83 -148.98 -1.91 -0.39 16 22 Si 0.77 -2.45 29.79 68.60 2.04 -0.41 16 23 C -0.17 0.10 8.60 22.37 0.19 0.29 16 24 C 0.13 0.37 6.71 22.55 0.15 0.52 16 25 O -0.50 -0.41 13.29 -79.55 -1.06 -1.47 16 26 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 28 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.08 -0.05 5.64 -2.39 -0.01 -0.07 16 30 H 0.08 -0.33 7.66 -2.39 -0.02 -0.35 16 31 H 0.11 -0.89 6.69 -2.39 -0.02 -0.90 16 32 H 0.12 -0.98 8.07 -2.39 -0.02 -1.00 16 33 H 0.07 -0.50 6.75 -2.39 -0.02 -0.52 16 34 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.05 -0.07 6.26 -2.38 -0.01 -0.09 16 36 H 0.12 -0.51 7.00 -2.39 -0.02 -0.53 16 37 H 0.09 -0.01 8.10 -2.38 -0.02 -0.03 16 38 H 0.15 -0.14 6.29 -2.91 -0.02 -0.16 16 39 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 40 H 0.40 -4.25 8.70 -74.06 -0.64 -4.89 16 41 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 42 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 43 H 0.16 -0.75 4.89 -2.91 -0.01 -0.76 16 44 H 0.42 -3.48 9.06 -74.05 -0.67 -4.16 16 Total: 0.00 -19.03 371.80 2.53 -16.50 By element: Atomic # 1 Polarization: -15.06 SS G_CDS: -0.18 Total: -15.24 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 4.22 Total: 7.70 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -5.71 Total: -8.56 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 2.17 Total: 0.02 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.04 Total: -0.41 kcal Total: -19.03 2.53 -16.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_17321602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.052 kcal (2) G-P(sol) polarization free energy of solvation -19.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds