Wall clock time and date at job start Mon Mar 8 2021 11:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36091 * 116.99877 * 2 1 4 4 C 1.38960 * 120.09137 * 89.99799 * 3 2 1 5 5 O 1.35995 * 120.04487 * 0.02562 * 4 3 2 6 6 C 1.38688 * 119.90928 * 179.74512 * 4 3 2 7 7 C 1.38200 * 120.08937 * 0.25173 * 6 4 3 8 8 C 1.50703 * 119.91033 * 180.02562 * 7 6 4 9 9 O 1.42899 * 109.47008 * 119.99998 * 8 7 6 10 10 Si 1.86299 * 109.46929 * 0.02562 * 8 7 6 11 11 H 1.48496 * 109.47307 * 59.99945 * 10 8 7 12 12 H 1.48505 * 109.47134 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46979 * 299.99445 * 10 8 7 14 14 C 1.38250 * 120.18379 * 0.02562 * 7 6 4 15 15 C 1.38647 * 120.08448 * 359.97438 * 14 7 6 16 16 O 1.35997 * 120.04250 * 179.97438 * 15 14 7 17 17 C 1.42902 * 117.00108 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.46930 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.46946 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47330 * 180.02562 * 19 18 17 21 21 Si 1.63103 * 114.00410 * 180.02562 * 20 19 18 22 22 C 1.86299 * 109.46666 * 299.99966 * 21 20 19 23 23 C 1.86302 * 109.47055 * 59.99542 * 21 20 19 24 24 C 1.86293 * 109.47286 * 180.02562 * 21 20 19 25 25 C 1.53001 * 109.47408 * 59.99502 * 24 21 20 26 26 C 1.52999 * 109.47211 * 179.97438 * 24 21 20 27 27 C 1.53001 * 109.46987 * 299.99575 * 24 21 20 28 28 H 1.09006 * 109.47137 * 60.00464 * 1 2 3 29 29 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47404 * 300.00210 * 1 2 3 31 31 H 0.96700 * 114.00111 * 269.72567 * 5 4 3 32 32 H 1.08002 * 119.95283 * 180.22961 * 6 4 3 33 33 H 1.08996 * 109.47504 * 239.99925 * 8 7 6 34 34 H 0.96696 * 114.00531 * 299.99737 * 9 8 7 35 35 H 1.07994 * 119.95771 * 179.97438 * 14 7 6 36 36 H 1.08995 * 109.47167 * 299.99600 * 17 16 15 37 37 H 1.08999 * 109.46799 * 59.99601 * 17 16 15 38 38 H 1.09006 * 109.47765 * 299.99836 * 18 17 16 39 39 H 1.08999 * 109.47204 * 60.00463 * 18 17 16 40 40 H 1.08995 * 109.47274 * 300.00289 * 19 18 17 41 41 H 1.08998 * 109.47194 * 60.00193 * 19 18 17 42 42 H 1.09004 * 109.47459 * 59.99654 * 22 21 20 43 43 H 1.08998 * 109.46948 * 179.97438 * 22 21 20 44 44 H 1.09009 * 109.47302 * 299.99779 * 22 21 20 45 45 H 1.08998 * 109.46835 * 60.00425 * 23 21 20 46 46 H 1.08998 * 109.46986 * 180.02562 * 23 21 20 47 47 H 1.08995 * 109.46971 * 300.00490 * 23 21 20 48 48 H 1.08998 * 109.46732 * 60.00152 * 25 24 21 49 49 H 1.09004 * 109.46905 * 180.02562 * 25 24 21 50 50 H 1.08998 * 109.47236 * 300.00183 * 25 24 21 51 51 H 1.09000 * 109.46929 * 59.99600 * 26 24 21 52 52 H 1.08994 * 109.47346 * 180.02562 * 26 24 21 53 53 H 1.08998 * 109.47109 * 299.99959 * 26 24 21 54 54 H 1.08998 * 109.47043 * 60.00193 * 27 24 21 55 55 H 1.09004 * 109.47312 * 180.02562 * 27 24 21 56 56 H 1.09000 * 109.47187 * 300.00421 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3631 1.8334 1.2023 5 8 2.0561 1.2298 2.3817 6 6 2.9974 3.0667 1.1979 7 6 3.3103 3.6806 0.0000 8 6 4.0002 5.0205 -0.0001 9 8 5.2541 4.9106 -0.6765 10 14 4.2888 5.5704 1.7563 11 1 5.1420 4.5744 2.4530 12 1 4.9692 6.8904 1.7563 13 1 2.9859 5.6845 2.4597 14 6 2.9923 3.0690 -1.1984 15 6 2.3581 1.8361 -1.2027 16 8 2.0451 1.2355 -2.3820 17 6 2.3997 1.9315 -3.5787 18 6 1.9719 1.1066 -4.7941 19 6 2.3509 1.8520 -6.0754 20 8 1.9509 1.0819 -7.2107 21 14 2.3047 1.7779 -8.6427 22 6 1.4410 3.4242 -8.7631 23 6 4.1458 2.0317 -8.7717 24 6 1.7308 0.6733 -10.0287 25 6 0.2187 0.4654 -9.9225 26 6 2.0621 1.3266 -11.3720 27 6 2.4396 -0.6789 -9.9300 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.1817 1.4592 2.7251 32 1 3.2469 3.5481 2.1320 33 1 3.3742 5.7515 -0.5119 34 1 5.8634 4.2761 -0.2750 35 1 3.2381 3.5522 -2.1324 36 1 1.8962 2.8979 -3.5996 37 1 3.4788 2.0833 -3.6045 38 1 2.4757 0.1401 -4.7731 39 1 0.8929 0.9545 -4.7685 40 1 1.8469 2.8182 -6.0963 41 1 3.4299 2.0045 -6.1014 42 1 1.7763 4.0707 -7.9521 43 1 1.6778 3.8895 -9.7199 44 1 0.3637 3.2757 -8.6876 45 1 4.6511 1.0685 -8.7012 46 1 4.3822 2.4973 -9.7284 47 1 4.4811 2.6782 -7.9607 48 1 -0.2863 1.4288 -9.9928 49 1 -0.1170 -0.1812 -10.7332 50 1 -0.0178 0.0003 -8.9655 51 1 3.1393 1.4750 -11.4479 52 1 1.7259 0.6806 -12.1829 53 1 1.5568 2.2898 -11.4421 54 1 2.2032 -1.1441 -8.9731 55 1 2.1042 -1.3251 -10.7413 56 1 3.5169 -0.5308 -10.0057 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_18527726.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:29:50 Heat of formation + Delta-G solvation = -224.248135 kcal Electronic energy + Delta-G solvation = -32553.787864 eV Core-core repulsion = 28166.420960 eV Total energy + Delta-G solvation = -4387.366904 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 372.202 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.90483 -39.85957 -39.01433 -38.28715 -38.02802 -36.82516 -36.54903 -33.58452 -31.56136 -30.59122 -29.36792 -29.05278 -28.25271 -27.83744 -27.37351 -27.01382 -25.92963 -23.76168 -22.89873 -22.25102 -20.41687 -19.90757 -18.71664 -18.53619 -18.22991 -17.61519 -17.54542 -17.37740 -16.65248 -16.18363 -16.02605 -15.96154 -15.92300 -15.82818 -15.51620 -15.21309 -15.17828 -14.85610 -14.75769 -14.59661 -14.00148 -13.96418 -13.73537 -13.45205 -13.36400 -13.32390 -13.16561 -12.95325 -12.95157 -12.89014 -12.82816 -12.69864 -12.56356 -12.38721 -12.33437 -12.15837 -11.94157 -11.86014 -11.70134 -11.69029 -11.64872 -11.35105 -11.30115 -10.90844 -10.46969 -10.30028 -10.05029 -9.73227 -9.33954 -0.14909 0.08159 1.15858 1.42303 1.47251 1.52802 1.79227 1.91793 2.01591 2.14040 2.20209 2.51843 2.70890 3.09178 3.41979 3.65530 3.88087 3.88721 3.92730 3.97055 4.09409 4.12611 4.12948 4.21355 4.34288 4.36085 4.39601 4.40443 4.43573 4.46793 4.47929 4.59990 4.74980 4.75882 4.76145 4.79494 4.80890 4.82848 4.83277 4.85694 4.99724 5.00381 5.05350 5.07529 5.09493 5.09857 5.18842 5.22081 5.35224 5.37633 5.41212 5.45191 5.55468 5.61856 5.65888 6.03529 6.40555 6.66300 6.74288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.341 6.341 3 C 0.017 3.983 4 C 0.129 3.871 5 O -0.496 6.496 6 C -0.182 4.182 7 C -0.064 4.064 8 C -0.074 4.074 9 O -0.547 6.547 10 Si 0.977 3.023 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.253 1.253 14 C -0.176 4.176 15 C 0.122 3.878 16 O -0.318 6.318 17 C 0.050 3.950 18 C -0.119 4.119 19 C 0.081 3.919 20 O -0.641 6.641 21 Si 1.317 2.683 22 C -0.517 4.517 23 C -0.518 4.518 24 C -0.385 4.385 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.411 0.589 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.390 0.610 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.054 0.946 51 H 0.063 0.937 52 H 0.048 0.952 53 H 0.064 0.936 54 H 0.054 0.946 55 H 0.047 0.953 56 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 4.768 -0.416 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.258 6.258 3 C -0.028 4.028 4 C 0.083 3.917 5 O -0.309 6.309 6 C -0.200 4.200 7 C -0.064 4.064 8 C -0.185 4.185 9 O -0.354 6.354 10 Si 0.802 3.198 11 H -0.184 1.184 12 H -0.196 1.196 13 H -0.177 1.177 14 C -0.195 4.195 15 C 0.075 3.925 16 O -0.232 6.232 17 C -0.024 4.024 18 C -0.157 4.157 19 C 0.006 3.994 20 O -0.601 6.601 21 Si 1.447 2.553 22 C -0.619 4.619 23 C -0.620 4.620 24 C -0.427 4.427 25 C -0.194 4.194 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.270 0.730 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.068 0.932 53 H 0.083 0.917 54 H 0.073 0.927 55 H 0.066 0.934 56 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.185 4.617 0.070 4.767 hybrid contribution -0.393 -0.252 -0.446 0.646 sum -1.578 4.365 -0.376 4.656 Atomic orbital electron populations 1.23149 0.77787 1.04417 1.00990 1.86144 1.21345 1.24066 1.94226 1.18574 1.04459 0.89465 0.90300 1.18363 0.98277 0.90563 0.84501 1.84845 1.41203 1.70536 1.34305 1.21283 1.04615 0.95055 0.99075 1.20155 0.97239 0.97205 0.91843 1.25006 0.87175 0.95602 1.10698 1.86487 1.25237 1.66414 1.57246 0.85279 0.80871 0.79427 0.74252 1.18424 1.19627 1.17723 1.21220 1.03152 0.94645 1.00454 1.19340 0.95897 0.91847 0.85410 1.86129 1.77339 1.47242 1.12457 1.22981 1.01600 0.96290 0.81529 1.21471 1.03344 0.99966 0.90937 1.21995 1.00039 0.93273 0.84131 1.85320 1.83411 1.60725 1.30651 0.76175 0.63682 0.60745 0.54708 1.27077 1.08948 1.20577 1.05256 1.27101 1.24677 1.05000 1.05233 1.25960 0.99968 1.05975 1.10831 1.21541 0.94491 1.01812 1.01559 1.21598 1.01867 1.00616 0.95670 1.21543 1.00230 0.96121 1.01551 0.93506 0.87671 0.92379 0.72983 0.83983 0.84360 0.76073 0.82247 0.89582 0.90087 0.90900 0.90516 0.90507 0.90790 0.90693 0.90361 0.91171 0.91325 0.90367 0.90758 0.91974 0.93433 0.92659 0.91790 0.93241 0.91704 0.92681 0.93413 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 11.13 113.37 1.26 1.31 16 2 O -0.34 -3.15 9.99 -70.44 -0.70 -3.85 16 3 C 0.02 0.12 5.75 22.63 0.13 0.25 16 4 C 0.13 0.58 6.71 22.55 0.15 0.73 16 5 O -0.50 -1.57 13.29 -79.54 -1.06 -2.63 16 6 C -0.18 -0.22 8.60 22.37 0.19 -0.03 16 7 C -0.06 0.05 5.39 -19.87 -0.11 -0.06 16 8 C -0.07 0.30 2.82 71.24 0.20 0.50 16 9 O -0.55 1.54 12.76 -148.98 -1.90 -0.36 16 10 Si 0.98 -2.83 25.06 68.60 1.72 -1.11 16 11 H -0.26 0.28 7.11 99.48 0.71 0.99 16 12 H -0.27 -0.09 7.11 99.48 0.71 0.62 16 13 H -0.25 0.59 7.11 99.48 0.71 1.30 16 14 C -0.18 -0.02 8.60 22.37 0.19 0.17 16 15 C 0.12 0.58 6.70 22.55 0.15 0.73 16 16 O -0.32 -1.55 9.92 -79.58 -0.79 -2.34 16 17 C 0.05 -0.12 4.74 71.98 0.34 0.22 16 18 C -0.12 0.17 5.95 30.59 0.18 0.35 16 19 C 0.08 -0.31 5.12 71.98 0.37 0.06 16 20 O -0.64 0.16 8.56 -148.98 -1.28 -1.12 16 21 Si 1.32 -4.14 8.45 68.60 0.58 -3.56 16 22 C -0.52 1.73 8.50 113.37 0.96 2.69 16 23 C -0.52 1.44 8.50 113.37 0.96 2.41 16 24 C -0.39 0.21 0.53 -10.79 -0.01 0.21 16 25 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 26 C -0.14 0.21 7.85 71.98 0.56 0.78 16 27 C -0.14 -0.12 7.85 71.98 0.56 0.45 16 28 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 -0.14 8.14 -2.39 -0.02 -0.15 16 31 H 0.41 -2.78 9.06 -74.06 -0.67 -3.45 16 32 H 0.14 -0.17 4.87 -2.91 -0.01 -0.19 16 33 H 0.14 -1.00 7.96 -2.39 -0.02 -1.02 16 34 H 0.39 -3.14 8.70 -74.06 -0.64 -3.78 16 35 H 0.16 -0.64 6.29 -2.91 -0.02 -0.66 16 36 H 0.09 -0.55 7.66 -2.39 -0.02 -0.57 16 37 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 38 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 39 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.08 -0.59 7.21 -2.39 -0.02 -0.61 16 41 H 0.07 -0.52 7.21 -2.39 -0.02 -0.53 16 42 H 0.07 -0.36 7.48 -2.38 -0.02 -0.38 16 43 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 44 H 0.07 -0.17 7.79 -2.38 -0.02 -0.19 16 45 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 46 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 47 H 0.07 -0.31 7.48 -2.39 -0.02 -0.33 16 48 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 49 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 50 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 51 H 0.06 -0.19 7.80 -2.39 -0.02 -0.21 16 52 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 53 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 54 H 0.05 0.10 7.96 -2.39 -0.02 0.08 16 55 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 56 H 0.06 -0.04 7.80 -2.39 -0.02 -0.06 16 Total: 0.00 -17.73 446.93 3.56 -14.18 By element: Atomic # 1 Polarization: -10.77 SS G_CDS: 0.30 Total: -10.46 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.68 Total: 11.26 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -5.73 Total: -10.30 kcal Atomic # 14 Polarization: -6.97 SS G_CDS: 2.30 Total: -4.67 kcal Total: -17.73 3.56 -14.18 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_18527726.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.073 kcal (2) G-P(sol) polarization free energy of solvation -17.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds