Wall clock time and date at job start Mon Mar 8 2021 08:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36087 * 117.00353 * 2 1 4 4 C 1.38963 * 120.09248 * 270.25213 * 3 2 1 5 5 O 1.36002 * 120.03885 * 0.02562 * 4 3 2 6 6 C 1.38683 * 119.91139 * 180.27280 * 4 3 2 7 7 C 1.38208 * 120.08673 * 359.72630 * 6 4 3 8 8 C 1.50699 * 119.90530 * 179.97438 * 7 6 4 9 9 O 1.42903 * 109.47171 * 120.02045 * 8 7 6 10 10 Si 1.86301 * 109.47460 * 0.02562 * 8 7 6 11 11 H 1.48500 * 109.47001 * 299.99834 * 10 8 7 12 12 H 1.48500 * 109.47008 * 59.99833 * 10 8 7 13 13 H 1.48506 * 109.47392 * 179.97438 * 10 8 7 14 14 C 1.38250 * 120.18356 * 0.02562 * 7 6 4 15 15 C 1.38640 * 120.08702 * 359.97438 * 14 7 6 16 16 O 1.35992 * 120.04575 * 179.97438 * 15 14 7 17 17 C 1.42906 * 117.00056 * 0.02562 * 16 15 14 18 18 C 1.50693 * 109.47463 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00207 * 89.99418 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 Si 1.86795 * 120.00205 * 180.02562 * 21 20 19 23 23 C 1.86297 * 109.47192 * 89.99958 * 22 21 20 24 24 C 1.86301 * 109.47283 * 209.99980 * 22 21 20 25 25 C 1.86301 * 109.47118 * 329.99845 * 22 21 20 26 26 C 1.38238 * 119.99693 * 359.97438 * 21 20 19 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 21 20 28 28 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47322 * 300.00458 * 1 2 3 30 30 H 1.09005 * 109.46812 * 60.00156 * 1 2 3 31 31 H 0.96697 * 113.99656 * 270.25537 * 5 4 3 32 32 H 1.08002 * 119.95451 * 179.74451 * 6 4 3 33 33 H 1.08998 * 109.47304 * 240.01675 * 8 7 6 34 34 H 0.96697 * 114.00664 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.95702 * 180.02562 * 14 7 6 36 36 H 1.09000 * 109.46902 * 59.99717 * 17 16 15 37 37 H 1.09001 * 109.46622 * 299.99613 * 17 16 15 38 38 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 39 39 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 40 40 H 1.08999 * 109.47282 * 60.00138 * 23 22 21 41 41 H 1.08997 * 109.47709 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47505 * 300.00288 * 23 22 21 43 43 H 1.08998 * 109.47270 * 60.00089 * 24 22 21 44 44 H 1.08997 * 109.47416 * 180.02562 * 24 22 21 45 45 H 1.09006 * 109.46995 * 300.00168 * 24 22 21 46 46 H 1.09002 * 109.46976 * 60.00696 * 25 22 21 47 47 H 1.09005 * 109.47230 * 179.97438 * 25 22 21 48 48 H 1.08998 * 109.47233 * 299.99787 * 25 22 21 49 49 H 1.08001 * 119.99624 * 180.02562 * 26 21 20 50 50 H 1.07999 * 120.00008 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 2.3586 1.8357 -1.2023 5 8 2.0460 1.2348 -2.3817 6 6 2.9934 3.0687 -1.1980 7 6 3.3109 3.6803 0.0001 8 6 4.0012 5.0199 0.0000 9 8 3.1836 5.9771 0.6762 10 14 4.2822 5.5737 -1.7564 11 1 5.1320 4.5791 -2.4591 12 1 2.9763 5.6898 -2.4537 13 1 4.9619 6.8941 -1.7564 14 6 2.9980 3.0660 1.1984 15 6 2.3634 1.8334 1.2027 16 8 2.0565 1.2297 2.3820 17 6 2.4166 1.9228 3.5787 18 6 2.0003 1.1078 4.7759 19 6 2.8737 0.1860 5.3221 20 6 2.4939 -0.5576 6.4238 21 6 1.2387 -0.3832 6.9761 22 14 0.7258 -1.3874 8.4653 23 6 1.1949 -0.4756 10.0207 24 6 -1.1183 -1.6503 8.4319 25 6 1.5891 -3.0379 8.4287 26 6 0.3635 0.5352 6.4269 27 6 0.7433 1.2787 5.3252 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.7409 0.6566 -2.7248 32 1 3.2396 3.5518 -2.1320 33 1 4.9597 4.9347 0.5120 34 1 3.5662 6.8644 0.7141 35 1 3.2475 3.5474 2.1325 36 1 1.9129 2.8891 3.6045 37 1 3.4957 2.0748 3.5997 38 1 3.8546 0.0501 4.8910 39 1 3.1779 -1.2745 6.8533 40 1 0.6897 0.4901 10.0422 41 1 0.8952 -1.0613 10.8897 42 1 2.2738 -0.3217 10.0404 43 1 -1.3928 -2.1838 7.5219 44 1 -1.4177 -2.2359 9.3010 45 1 -1.6234 -0.6846 8.4533 46 1 2.6680 -2.8840 8.4484 47 1 1.2901 -3.6237 9.2979 48 1 1.3146 -3.5714 7.5187 49 1 -0.6170 0.6717 6.8587 50 1 0.0597 1.9965 4.8964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_18340330_9403676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:59 Heat of formation + Delta-G solvation = -137.358293 kcal Electronic energy + Delta-G solvation = -29868.944327 eV Core-core repulsion = 25757.735737 eV Total energy + Delta-G solvation = -4111.208590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 362.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79227 -40.31900 -39.22066 -38.82549 -37.99977 -36.62310 -33.17811 -31.88053 -31.53586 -30.48172 -29.58251 -28.44655 -28.42095 -28.18165 -27.49182 -25.90799 -23.69071 -23.47888 -22.56892 -21.93371 -19.64689 -18.76736 -18.51767 -18.12093 -18.05865 -17.36715 -17.12827 -16.39943 -16.31548 -16.12214 -15.87528 -15.56974 -15.34895 -15.06802 -14.83875 -14.64937 -14.36088 -14.32616 -14.17074 -14.11750 -13.86350 -13.78224 -13.51827 -13.28091 -13.26968 -13.19173 -13.10892 -13.10033 -12.72271 -12.62177 -12.49652 -12.18414 -12.11172 -11.91434 -11.82429 -11.63505 -11.05612 -10.91004 -10.83757 -10.74088 -10.47194 -9.77462 -9.68514 -9.60957 -9.20780 -0.05832 0.16830 0.20405 0.55341 1.05340 1.37574 1.44836 1.69780 1.84351 1.85146 1.86431 2.14899 2.26155 2.53866 2.87931 3.00950 3.11527 3.42451 3.66857 3.79059 3.79602 3.96078 3.97297 4.11492 4.19677 4.22368 4.26570 4.41101 4.45820 4.51520 4.53949 4.57530 4.67160 4.69684 4.71113 4.74791 4.75432 4.75906 4.76894 4.86999 4.92887 5.00570 5.11981 5.15697 5.29258 5.37798 5.40179 5.45754 5.50057 5.53022 5.62295 5.62799 6.10373 6.12657 6.46640 6.47863 6.76984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.041 3.959 4 C 0.138 3.862 5 O -0.486 6.486 6 C -0.177 4.177 7 C -0.023 4.023 8 C -0.083 4.083 9 O -0.543 6.543 10 Si 0.946 3.054 11 H -0.248 1.248 12 H -0.245 1.245 13 H -0.255 1.255 14 C -0.177 4.177 15 C 0.130 3.870 16 O -0.293 6.293 17 C 0.097 3.903 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.361 4.361 22 Si 1.060 2.940 23 C -0.449 4.449 24 C -0.450 4.450 25 C -0.450 4.450 26 C -0.092 4.092 27 C -0.106 4.106 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.398 0.602 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.383 0.617 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.123 0.877 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 1.323 2.119 3.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.235 6.235 3 C -0.004 4.004 4 C 0.092 3.908 5 O -0.297 6.297 6 C -0.195 4.195 7 C -0.024 4.024 8 C -0.193 4.193 9 O -0.349 6.349 10 Si 0.769 3.231 11 H -0.172 1.172 12 H -0.168 1.168 13 H -0.179 1.179 14 C -0.196 4.196 15 C 0.084 3.916 16 O -0.207 6.207 17 C 0.022 3.978 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.402 4.402 22 Si 1.251 2.749 23 C -0.556 4.556 24 C -0.558 4.558 25 C -0.558 4.558 26 C -0.110 4.110 27 C -0.124 4.124 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.230 0.770 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.141 0.859 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.301 1.045 1.371 2.160 hybrid contribution 0.706 0.565 0.182 0.923 sum 2.007 1.610 1.553 3.006 Atomic orbital electron populations 1.23013 0.78623 1.03301 1.00666 1.86071 1.20182 1.23225 1.94051 1.18338 1.04076 0.88684 0.89326 1.18241 0.96663 0.91362 0.84541 1.84790 1.45790 1.64624 1.34486 1.21076 1.03349 0.97005 0.98119 1.18877 0.97189 0.94042 0.92257 1.24750 0.95908 0.89127 1.09562 1.86499 1.47104 1.21938 1.79389 0.85728 0.81480 0.80603 0.75337 1.17188 1.16816 1.17895 1.21011 1.04325 0.94817 0.99479 1.19229 0.95525 0.91183 0.85693 1.86269 1.76991 1.46008 1.11407 1.21721 1.00383 0.94669 0.80978 1.19425 0.95257 0.98506 0.95589 1.21147 0.99484 0.95204 0.96443 1.21076 0.96343 0.98235 0.95301 1.27482 0.96847 1.04376 1.11517 0.78184 0.66952 0.65811 0.63918 1.26120 1.05625 1.08426 1.15456 1.26136 1.20032 1.04891 1.04695 1.26137 1.07897 1.17024 1.04700 1.21073 0.99347 0.95241 0.95315 1.21144 0.95093 0.99653 0.96500 0.88754 0.93582 0.93281 0.74454 0.84864 0.90062 0.76981 0.84178 0.90786 0.90841 0.86107 0.85876 0.91168 0.91009 0.91162 0.91025 0.90934 0.91177 0.91168 0.90938 0.91014 0.85894 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.10 11.13 101.05 1.13 1.22 16 2 O -0.32 -1.58 9.98 -45.27 -0.45 -2.03 16 3 C 0.04 0.18 5.75 -39.03 -0.22 -0.05 16 4 C 0.14 0.43 6.71 -39.15 -0.26 0.17 16 5 O -0.49 -1.00 13.29 -34.34 -0.46 -1.46 16 6 C -0.18 -0.39 8.60 -39.43 -0.34 -0.73 16 7 C -0.02 -0.04 5.42 -104.63 -0.57 -0.61 16 8 C -0.08 0.05 2.81 36.01 0.10 0.15 16 9 O -0.54 0.15 12.74 -35.23 -0.45 -0.29 16 10 Si 0.95 -0.65 25.06 -169.99 -4.26 -4.91 16 11 H -0.25 0.07 7.11 56.52 0.40 0.47 16 12 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 13 H -0.25 0.20 7.11 56.52 0.40 0.60 16 14 C -0.18 -0.37 8.60 -39.43 -0.34 -0.71 16 15 C 0.13 0.47 6.70 -39.15 -0.26 0.21 16 16 O -0.29 -1.12 9.90 -34.29 -0.34 -1.46 16 17 C 0.10 0.11 4.86 36.00 0.18 0.29 16 18 C -0.09 -0.16 5.51 -104.63 -0.58 -0.74 16 19 C -0.10 -0.16 9.70 -39.58 -0.38 -0.54 16 20 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 21 C -0.36 -0.05 4.59 -39.58 -0.18 -0.23 16 22 Si 1.06 -2.47 12.32 -169.99 -2.09 -4.56 16 23 C -0.45 0.67 8.65 101.05 0.87 1.54 16 24 C -0.45 0.71 8.53 101.05 0.86 1.57 16 25 C -0.45 0.70 8.53 101.05 0.86 1.56 16 26 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 27 C -0.11 -0.16 9.70 -39.58 -0.38 -0.54 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.40 -0.97 9.06 45.56 0.41 -0.56 16 32 H 0.13 0.12 4.87 -52.49 -0.26 -0.13 16 33 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 34 H 0.38 -1.82 8.74 45.56 0.40 -1.43 16 35 H 0.14 0.06 6.29 -52.49 -0.33 -0.27 16 36 H 0.07 0.01 7.61 -51.93 -0.39 -0.39 16 37 H 0.07 -0.02 7.61 -51.93 -0.39 -0.42 16 38 H 0.12 0.03 8.06 -52.49 -0.42 -0.40 16 39 H 0.12 -0.16 7.43 -52.49 -0.39 -0.55 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 43 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 45 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 46 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 47 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 48 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 49 H 0.12 -0.16 7.43 -52.49 -0.39 -0.55 16 50 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 LS Contribution 417.67 15.07 6.29 6.29 Total: 0.00 -8.44 417.67 -8.37 -16.81 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -6.36 Total: -10.10 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.26 Total: 1.71 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -1.70 Total: -5.24 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: -6.35 Total: -9.47 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -8.44 -8.37 -16.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_9403676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.544 kcal (2) G-P(sol) polarization free energy of solvation -8.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds