Wall clock time and date at job start Mon Mar 8 2021 08:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36087 * 117.00353 * 2 1 4 4 C 1.38963 * 120.09248 * 270.25213 * 3 2 1 5 5 O 1.36002 * 120.03885 * 0.02562 * 4 3 2 6 6 C 1.38683 * 119.91139 * 180.27280 * 4 3 2 7 7 C 1.38208 * 120.08673 * 359.72630 * 6 4 3 8 8 C 1.50699 * 119.90530 * 179.97438 * 7 6 4 9 9 O 1.42903 * 109.47171 * 120.02045 * 8 7 6 10 10 Si 1.86301 * 109.47460 * 0.02562 * 8 7 6 11 11 H 1.48500 * 109.47001 * 299.99834 * 10 8 7 12 12 H 1.48500 * 109.47008 * 59.99833 * 10 8 7 13 13 H 1.48506 * 109.47392 * 179.97438 * 10 8 7 14 14 C 1.38250 * 120.18356 * 0.02562 * 7 6 4 15 15 C 1.38640 * 120.08702 * 359.97438 * 14 7 6 16 16 O 1.35992 * 120.04575 * 179.97438 * 15 14 7 17 17 C 1.42906 * 117.00056 * 0.02562 * 16 15 14 18 18 C 1.50693 * 109.47463 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00207 * 89.99418 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 Si 1.86795 * 120.00205 * 180.02562 * 21 20 19 23 23 C 1.86297 * 109.47192 * 89.99958 * 22 21 20 24 24 C 1.86301 * 109.47283 * 209.99980 * 22 21 20 25 25 C 1.86301 * 109.47118 * 329.99845 * 22 21 20 26 26 C 1.38238 * 119.99693 * 359.97438 * 21 20 19 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 21 20 28 28 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47322 * 300.00458 * 1 2 3 30 30 H 1.09005 * 109.46812 * 60.00156 * 1 2 3 31 31 H 0.96697 * 113.99656 * 270.25537 * 5 4 3 32 32 H 1.08002 * 119.95451 * 179.74451 * 6 4 3 33 33 H 1.08998 * 109.47304 * 240.01675 * 8 7 6 34 34 H 0.96697 * 114.00664 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.95702 * 180.02562 * 14 7 6 36 36 H 1.09000 * 109.46902 * 59.99717 * 17 16 15 37 37 H 1.09001 * 109.46622 * 299.99613 * 17 16 15 38 38 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 39 39 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 40 40 H 1.08999 * 109.47282 * 60.00138 * 23 22 21 41 41 H 1.08997 * 109.47709 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.47505 * 300.00288 * 23 22 21 43 43 H 1.08998 * 109.47270 * 60.00089 * 24 22 21 44 44 H 1.08997 * 109.47416 * 180.02562 * 24 22 21 45 45 H 1.09006 * 109.46995 * 300.00168 * 24 22 21 46 46 H 1.09002 * 109.46976 * 60.00696 * 25 22 21 47 47 H 1.09005 * 109.47230 * 179.97438 * 25 22 21 48 48 H 1.08998 * 109.47233 * 299.99787 * 25 22 21 49 49 H 1.08001 * 119.99624 * 180.02562 * 26 21 20 50 50 H 1.07999 * 120.00008 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 2.3586 1.8357 -1.2023 5 8 2.0460 1.2348 -2.3817 6 6 2.9934 3.0687 -1.1980 7 6 3.3109 3.6803 0.0001 8 6 4.0012 5.0199 0.0000 9 8 3.1836 5.9771 0.6762 10 14 4.2822 5.5737 -1.7564 11 1 5.1320 4.5791 -2.4591 12 1 2.9763 5.6898 -2.4537 13 1 4.9619 6.8941 -1.7564 14 6 2.9980 3.0660 1.1984 15 6 2.3634 1.8334 1.2027 16 8 2.0565 1.2297 2.3820 17 6 2.4166 1.9228 3.5787 18 6 2.0003 1.1078 4.7759 19 6 2.8737 0.1860 5.3221 20 6 2.4939 -0.5576 6.4238 21 6 1.2387 -0.3832 6.9761 22 14 0.7258 -1.3874 8.4653 23 6 1.1949 -0.4756 10.0207 24 6 -1.1183 -1.6503 8.4319 25 6 1.5891 -3.0379 8.4287 26 6 0.3635 0.5352 6.4269 27 6 0.7433 1.2787 5.3252 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.7409 0.6566 -2.7248 32 1 3.2396 3.5518 -2.1320 33 1 4.9597 4.9347 0.5120 34 1 3.5662 6.8644 0.7141 35 1 3.2475 3.5474 2.1325 36 1 1.9129 2.8891 3.6045 37 1 3.4957 2.0748 3.5997 38 1 3.8546 0.0501 4.8910 39 1 3.1779 -1.2745 6.8533 40 1 0.6897 0.4901 10.0422 41 1 0.8952 -1.0613 10.8897 42 1 2.2738 -0.3217 10.0404 43 1 -1.3928 -2.1838 7.5219 44 1 -1.4177 -2.2359 9.3010 45 1 -1.6234 -0.6846 8.4533 46 1 2.6680 -2.8840 8.4484 47 1 1.2901 -3.6237 9.2979 48 1 1.3146 -3.5714 7.5187 49 1 -0.6170 0.6717 6.8587 50 1 0.0597 1.9965 4.8964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_18340330_9403676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:58 Heat of formation + Delta-G solvation = -132.743372 kcal Electronic energy + Delta-G solvation = -29868.744209 eV Core-core repulsion = 25757.735737 eV Total energy + Delta-G solvation = -4111.008472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 362.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94981 -40.39226 -39.33191 -38.94828 -38.10058 -36.67257 -33.22624 -31.89792 -31.65053 -30.62640 -29.44345 -28.33642 -28.29992 -28.27059 -27.55419 -25.99336 -23.82641 -23.50205 -22.68204 -21.99257 -19.79884 -18.85733 -18.54191 -18.26066 -18.15925 -17.40041 -17.26010 -16.55931 -16.39487 -16.14777 -15.88408 -15.70102 -15.45619 -15.19469 -14.92329 -14.62252 -14.35043 -14.31312 -14.05906 -14.03676 -13.77185 -13.73477 -13.53546 -13.25448 -13.19637 -13.13848 -13.11605 -12.97011 -12.80768 -12.68326 -12.56388 -12.23164 -12.15422 -11.92844 -11.85572 -11.69626 -11.00597 -10.89931 -10.78713 -10.76292 -10.39660 -9.82175 -9.75696 -9.70167 -9.38572 -0.21093 0.04250 0.13285 0.50687 1.11806 1.44252 1.49347 1.82383 1.89033 1.90598 2.01970 2.09144 2.21200 2.66219 2.72904 2.94645 3.08896 3.38231 3.70508 3.74869 3.78148 3.83343 3.88041 4.09210 4.16182 4.21258 4.24780 4.34709 4.35162 4.39791 4.44080 4.51831 4.68704 4.69662 4.79915 4.84513 4.84723 4.88437 4.88993 4.89391 4.90723 4.96021 4.98448 5.14406 5.16335 5.29646 5.38403 5.55221 5.58308 5.59017 5.67949 5.70125 5.95930 6.10790 6.37803 6.68186 6.79124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.336 6.336 3 C 0.015 3.985 4 C 0.134 3.866 5 O -0.496 6.496 6 C -0.185 4.185 7 C -0.027 4.027 8 C -0.081 4.081 9 O -0.560 6.560 10 Si 0.974 3.026 11 H -0.254 1.254 12 H -0.276 1.276 13 H -0.249 1.249 14 C -0.178 4.178 15 C 0.121 3.879 16 O -0.312 6.312 17 C 0.096 3.904 18 C -0.103 4.103 19 C -0.121 4.121 20 C -0.103 4.103 21 C -0.373 4.373 22 Si 1.127 2.873 23 C -0.461 4.461 24 C -0.463 4.463 25 C -0.463 4.463 26 C -0.103 4.103 27 C -0.122 4.122 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.415 0.585 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.402 0.598 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.140 0.860 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 1.787 2.935 4.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.253 6.253 3 C -0.030 4.030 4 C 0.088 3.912 5 O -0.310 6.310 6 C -0.203 4.203 7 C -0.027 4.027 8 C -0.191 4.191 9 O -0.370 6.370 10 Si 0.799 3.201 11 H -0.178 1.178 12 H -0.201 1.201 13 H -0.172 1.172 14 C -0.197 4.197 15 C 0.075 3.925 16 O -0.226 6.226 17 C 0.022 3.978 18 C -0.103 4.103 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.412 4.412 22 Si 1.314 2.686 23 C -0.567 4.567 24 C -0.570 4.570 25 C -0.570 4.570 26 C -0.121 4.121 27 C -0.140 4.140 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.275 0.725 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.158 0.842 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.948 1.531 2.177 3.298 hybrid contribution 0.495 0.429 -0.087 0.661 sum 2.443 1.960 2.090 3.765 Atomic orbital electron populations 1.23093 0.77961 1.04263 1.00363 1.86031 1.21070 1.24020 1.94194 1.18600 1.05185 0.89028 0.90139 1.18334 0.96590 0.91731 0.84512 1.84735 1.47019 1.65108 1.34154 1.21253 1.03401 0.96789 0.98881 1.19227 0.96556 0.95064 0.91883 1.24756 0.96507 0.87879 1.09934 1.86451 1.47887 1.23293 1.79335 0.85335 0.79518 0.80552 0.74718 1.17834 1.20110 1.17235 1.21183 1.03923 0.94247 1.00322 1.19364 0.95909 0.91770 0.85500 1.86236 1.77352 1.46918 1.12065 1.21846 1.01271 0.94698 0.79970 1.19594 0.95656 0.99088 0.96006 1.21381 0.99952 0.95506 0.97022 1.21398 0.97031 0.98466 0.95205 1.28091 0.96539 1.04271 1.12287 0.77175 0.65547 0.64117 0.61749 1.26257 1.05591 1.08623 1.16256 1.26288 1.20988 1.05095 1.04637 1.26286 1.08359 1.17718 1.04634 1.21388 1.00299 0.95212 0.95215 1.21367 0.95295 1.00242 0.97109 0.87188 0.94038 0.93368 0.72456 0.84000 0.87372 0.74722 0.82662 0.89989 0.89539 0.85439 0.84184 0.91338 0.90595 0.91299 0.91472 0.90569 0.90898 0.90861 0.90571 0.91478 0.84248 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 11.13 113.37 1.26 1.51 16 2 O -0.34 -3.90 9.98 -70.39 -0.70 -4.60 16 3 C 0.02 0.16 5.75 22.63 0.13 0.29 16 4 C 0.13 1.00 6.71 22.55 0.15 1.15 16 5 O -0.50 -2.56 13.29 -79.62 -1.06 -3.62 16 6 C -0.18 -0.93 8.60 22.37 0.19 -0.74 16 7 C -0.03 -0.09 5.42 -19.87 -0.11 -0.20 16 8 C -0.08 0.18 2.81 71.24 0.20 0.38 16 9 O -0.56 0.92 12.74 -148.98 -1.90 -0.97 16 10 Si 0.97 -1.80 25.06 68.60 1.72 -0.08 16 11 H -0.25 0.25 7.11 99.48 0.71 0.96 16 12 H -0.28 -0.88 7.11 99.48 0.71 -0.17 16 13 H -0.25 0.72 7.11 99.48 0.71 1.42 16 14 C -0.18 -0.78 8.60 22.37 0.19 -0.59 16 15 C 0.12 1.02 6.70 22.55 0.15 1.17 16 16 O -0.31 -2.81 9.90 -79.52 -0.79 -3.60 16 17 C 0.10 0.30 4.86 71.23 0.35 0.65 16 18 C -0.10 -0.49 5.51 -19.87 -0.11 -0.59 16 19 C -0.12 -0.45 9.70 22.27 0.22 -0.24 16 20 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 21 C -0.37 -0.11 4.59 22.27 0.10 -0.01 16 22 Si 1.13 -5.85 12.32 68.60 0.85 -5.00 16 23 C -0.46 1.66 8.65 113.37 0.98 2.64 16 24 C -0.46 1.68 8.53 113.37 0.97 2.64 16 25 C -0.46 1.69 8.53 113.37 0.97 2.66 16 26 C -0.10 -0.18 9.29 22.27 0.21 0.03 16 27 C -0.12 -0.48 9.70 22.27 0.22 -0.27 16 28 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.42 -1.65 9.06 -74.06 -0.67 -2.32 16 32 H 0.14 0.34 4.87 -2.91 -0.01 0.33 16 33 H 0.11 -0.81 7.96 -2.39 -0.02 -0.82 16 34 H 0.40 -4.41 8.74 -74.06 -0.65 -5.05 16 35 H 0.16 0.08 6.29 -2.91 -0.02 0.06 16 36 H 0.08 0.07 7.61 -2.39 -0.02 0.05 16 37 H 0.09 -0.02 7.61 -2.39 -0.02 -0.04 16 38 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.14 -0.39 7.43 -2.91 -0.02 -0.41 16 40 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 43 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 44 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 45 H 0.07 -0.30 7.69 -2.38 -0.02 -0.32 16 46 H 0.07 -0.30 7.69 -2.39 -0.02 -0.32 16 47 H 0.08 -0.32 7.96 -2.38 -0.02 -0.34 16 48 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 49 H 0.14 -0.36 7.43 -2.91 -0.02 -0.39 16 50 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 Total: 0.00 -19.84 417.67 4.79 -15.06 By element: Atomic # 1 Polarization: -8.11 SS G_CDS: 0.40 Total: -7.71 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.27 Total: 10.53 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -4.45 Total: -12.79 kcal Atomic # 14 Polarization: -7.65 SS G_CDS: 2.56 Total: -5.08 kcal Total: -19.84 4.79 -15.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_18340330_9403676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.687 kcal (2) G-P(sol) polarization free energy of solvation -19.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds