Wall clock time and date at job start Mon Mar 8 2021 10:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 117.00084 * 2 1 4 4 C 1.38525 * 120.07232 * 270.25846 * 3 2 1 5 5 C 1.50698 * 120.00295 * 0.02562 * 4 3 2 6 6 O 1.42901 * 109.46982 * 75.27701 * 5 4 3 7 7 Si 1.86300 * 109.47106 * 195.27575 * 5 4 3 8 8 H 1.48503 * 109.47302 * 59.99607 * 7 5 4 9 9 H 1.48493 * 109.47235 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47111 * 299.99899 * 7 5 4 11 11 C 1.38284 * 119.99315 * 180.27577 * 4 3 2 12 12 C 1.38213 * 120.15087 * 359.72268 * 11 4 3 13 13 C 1.38284 * 120.14471 * 0.02562 * 12 11 4 14 14 C 1.38526 * 119.99985 * 359.97438 * 13 12 11 15 15 O 1.35995 * 120.07539 * 180.02562 * 14 13 12 16 16 C 1.42903 * 116.99587 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47405 * 64.99720 * 17 16 15 19 19 Si 1.63104 * 113.99972 * 179.97438 * 18 17 16 20 20 C 1.86297 * 109.47259 * 300.00387 * 19 18 17 21 21 C 1.86303 * 109.46923 * 60.00303 * 19 18 17 22 22 C 1.86299 * 109.46989 * 180.02562 * 19 18 17 23 23 C 1.53000 * 109.46921 * 59.99970 * 22 19 18 24 24 C 1.52997 * 109.46904 * 180.02562 * 22 19 18 25 25 C 1.52995 * 109.46973 * 300.00341 * 22 19 18 26 26 H 1.09001 * 109.47436 * 59.99312 * 1 2 3 27 27 H 1.08994 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46519 * 299.99754 * 1 2 3 29 29 H 1.08994 * 109.47066 * 315.27157 * 5 4 3 30 30 H 0.96691 * 114.00214 * 60.00247 * 6 5 4 31 31 H 1.08004 * 119.92392 * 179.74480 * 11 4 3 32 32 H 1.08002 * 119.92854 * 179.97438 * 12 11 4 33 33 H 1.07996 * 119.99864 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 35 35 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 36 36 H 1.09002 * 109.46642 * 184.99995 * 17 16 15 37 37 H 1.09002 * 109.47069 * 304.99524 * 17 16 15 38 38 H 1.08998 * 109.47381 * 59.99876 * 20 19 18 39 39 H 1.08999 * 109.47492 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46818 * 299.99971 * 20 19 18 41 41 H 1.08998 * 109.46674 * 59.99804 * 21 19 18 42 42 H 1.08991 * 109.47013 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47060 * 299.99722 * 21 19 18 44 44 H 1.08999 * 109.47189 * 60.00528 * 23 22 19 45 45 H 1.08998 * 109.46838 * 179.97438 * 23 22 19 46 46 H 1.08991 * 109.47403 * 299.99887 * 23 22 19 47 47 H 1.08994 * 109.47445 * 59.99723 * 24 22 19 48 48 H 1.09000 * 109.46663 * 180.02562 * 24 22 19 49 49 H 1.09002 * 109.47015 * 299.99953 * 24 22 19 50 50 H 1.08999 * 109.47775 * 60.00054 * 25 22 19 51 51 H 1.09008 * 109.47049 * 180.02562 * 25 22 19 52 52 H 1.09002 * 109.47582 * 299.99598 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3568 1.8327 -1.1988 5 6 2.0097 1.1658 -2.5048 6 8 0.6051 1.2823 -2.7406 7 14 2.9425 1.9907 -3.8905 8 1 4.4022 1.8698 -3.6454 9 1 2.6010 1.3332 -5.1774 10 1 2.5685 3.4265 -3.9531 11 6 2.9897 3.0622 -1.1969 12 6 3.3089 3.6768 -0.0008 13 6 2.9973 3.0647 1.1994 14 6 2.3632 1.8331 1.2046 15 8 2.0555 1.2300 2.3841 16 6 2.4159 1.9233 3.5805 17 6 1.9934 1.0959 4.7962 18 8 2.7395 -0.1224 4.8259 19 14 2.3749 -1.0932 6.0848 20 6 2.7218 -0.1971 7.6809 21 6 0.5714 -1.5547 6.0111 22 6 3.4154 -2.6363 6.0009 23 6 4.8963 -2.2567 6.0617 24 6 3.0728 -3.5471 7.1815 25 6 3.1310 -3.3723 4.6901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 2.2843 0.1120 -2.4589 30 1 0.2895 2.1947 -2.7935 31 1 3.2349 3.5434 -2.1322 32 1 3.8037 4.6368 -0.0035 33 1 3.2481 3.5469 2.1326 34 1 1.9129 2.8900 3.6059 35 1 3.4951 2.0746 3.6017 36 1 2.1872 1.6630 5.7067 37 1 0.9294 0.8689 4.7292 38 1 2.1133 0.7060 7.7302 39 1 2.4776 -0.8456 8.5222 40 1 3.7769 0.0730 7.7240 41 1 0.3685 -2.0790 5.0772 42 1 0.3278 -2.2038 6.8521 43 1 -0.0370 -0.6517 6.0604 44 1 5.0989 -1.7323 6.9955 45 1 5.5050 -3.1595 6.0130 46 1 5.1400 -1.6080 5.2204 47 1 2.0178 -3.8174 7.1377 48 1 3.6819 -4.4497 7.1325 49 1 3.2751 -3.0229 8.1155 50 1 3.3747 -2.7236 3.8487 51 1 3.7395 -4.2755 4.6412 52 1 2.0760 -3.6428 4.6467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_204903_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:19:27 Heat of formation + Delta-G solvation = -179.936351 kcal Electronic energy + Delta-G solvation = -29259.212962 eV Core-core repulsion = 25347.987372 eV Total energy + Delta-G solvation = -3911.225589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58446 -39.58733 -38.09940 -37.88145 -37.08574 -36.80710 -32.22029 -31.60182 -30.02702 -29.36267 -29.08684 -27.84218 -27.66883 -27.36354 -26.68968 -24.23403 -23.38791 -21.97252 -20.39335 -19.40139 -18.41637 -18.14328 -18.09439 -17.26553 -16.86541 -16.19565 -16.07527 -16.06057 -15.94734 -15.63536 -15.54294 -15.41743 -14.84217 -14.74064 -14.68233 -14.57227 -14.14433 -13.98081 -13.59774 -13.47894 -13.35092 -13.26309 -13.24343 -13.16934 -12.92773 -12.89374 -12.65092 -12.40111 -12.37489 -12.20607 -12.03692 -11.96371 -11.80461 -11.67430 -11.56003 -11.52555 -11.30919 -10.69981 -10.40578 -10.37479 -10.05692 -9.78633 -9.08349 0.11512 0.33647 1.15665 1.42870 1.43003 1.55857 1.73566 1.91766 2.04730 2.16322 2.41831 2.47436 3.05763 3.47969 3.65625 3.74396 3.95586 3.96384 4.06636 4.11769 4.14657 4.15330 4.19762 4.23223 4.41794 4.49672 4.55056 4.58814 4.62980 4.63988 4.68407 4.71829 4.74142 4.74926 4.81963 4.82704 4.89158 5.02837 5.03173 5.13315 5.14603 5.18922 5.19864 5.26116 5.33980 5.36352 5.39821 5.43932 5.52106 5.53801 5.60220 5.61262 6.24982 6.53992 6.79578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.092 3.908 4 C -0.103 4.103 5 C -0.078 4.078 6 O -0.534 6.534 7 Si 0.957 3.043 8 H -0.248 1.248 9 H -0.253 1.253 10 H -0.252 1.252 11 C -0.156 4.156 12 C -0.078 4.078 13 C -0.196 4.196 14 C 0.116 3.884 15 O -0.291 6.291 16 C 0.054 3.946 17 C 0.088 3.912 18 O -0.617 6.617 19 Si 1.286 2.714 20 C -0.512 4.512 21 C -0.510 4.510 22 C -0.374 4.374 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.134 4.134 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.122 0.878 30 H 0.374 0.626 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 3.950 1.697 4.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.047 3.953 4 C -0.104 4.104 5 C -0.188 4.188 6 O -0.339 6.339 7 Si 0.780 3.220 8 H -0.172 1.172 9 H -0.177 1.177 10 H -0.176 1.176 11 C -0.174 4.174 12 C -0.096 4.096 13 C -0.215 4.215 14 C 0.069 3.931 15 O -0.204 6.204 16 C -0.022 4.022 17 C 0.012 3.988 18 O -0.576 6.576 19 Si 1.417 2.583 20 C -0.613 4.613 21 C -0.612 4.612 22 C -0.417 4.417 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.191 4.191 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.220 0.780 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.146 3.340 0.850 3.450 hybrid contribution -0.441 0.561 1.117 1.326 sum -0.587 3.902 1.967 4.409 Atomic orbital electron populations 1.23108 0.78520 1.03267 1.01065 1.86037 1.20207 1.23494 1.94051 1.17729 1.00941 0.87770 0.88828 1.20454 1.00117 0.94708 0.95083 1.24976 0.87964 1.06918 0.98930 1.86539 1.21059 1.31939 1.94393 0.85600 0.79647 0.79186 0.77578 1.17184 1.17714 1.17633 1.20952 1.02265 0.95228 0.98928 1.20917 0.97739 0.99604 0.91318 1.21246 1.04667 0.95765 0.99833 1.19499 0.96145 0.91491 0.85966 1.86248 1.76700 1.45981 1.11463 1.23055 1.01407 0.94832 0.82876 1.22056 0.95444 0.85206 0.96072 1.85418 1.67833 1.35764 1.68606 0.76746 0.63987 0.61695 0.55841 1.27048 1.05331 1.08894 1.20076 1.27020 1.23455 1.05811 1.04926 1.25765 1.04972 1.12849 0.98145 1.21507 0.94508 1.01460 1.01611 1.21556 1.01426 0.99508 0.96875 1.21506 1.01282 1.00249 0.96074 0.91780 0.89239 0.94195 0.85973 0.77959 0.85371 0.85041 0.84788 0.90726 0.90659 0.90462 0.91514 0.91552 0.90633 0.90852 0.90717 0.90775 0.91576 0.92782 0.92795 0.92167 0.92522 0.92504 0.92585 0.91961 0.92857 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 11.11 101.05 1.12 1.20 16 2 O -0.32 -1.49 9.53 -34.22 -0.33 -1.81 16 3 C 0.09 0.33 5.71 -39.12 -0.22 0.11 16 4 C -0.10 -0.19 5.27 -104.50 -0.55 -0.74 16 5 C -0.08 -0.05 2.38 36.00 0.09 0.03 16 6 O -0.53 -0.23 10.84 -35.23 -0.38 -0.61 16 7 Si 0.96 -0.25 25.49 -169.99 -4.33 -4.58 16 8 H -0.25 -0.16 7.11 56.52 0.40 0.25 16 9 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 10 H -0.25 0.20 6.73 56.52 0.38 0.58 16 11 C -0.16 -0.08 8.66 -39.57 -0.34 -0.43 16 12 C -0.08 0.00 10.04 -39.57 -0.40 -0.40 16 13 C -0.20 -0.13 9.04 -39.46 -0.36 -0.49 16 14 C 0.12 0.34 6.70 -39.12 -0.26 0.08 16 15 O -0.29 -0.89 9.89 -40.69 -0.40 -1.29 16 16 C 0.05 -0.02 5.12 37.16 0.19 0.17 16 17 C 0.09 -0.08 5.50 37.16 0.20 0.12 16 18 O -0.62 -0.59 8.52 -40.09 -0.34 -0.94 16 19 Si 1.29 -0.86 8.45 -169.99 -1.44 -2.29 16 20 C -0.51 0.49 8.50 101.05 0.86 1.35 16 21 C -0.51 0.10 8.50 101.05 0.86 0.96 16 22 C -0.37 -0.13 0.53 -90.62 -0.05 -0.18 16 23 C -0.13 -0.08 7.85 37.16 0.29 0.21 16 24 C -0.14 0.02 7.85 37.16 0.29 0.31 16 25 C -0.13 -0.17 7.84 37.15 0.29 0.13 16 26 H 0.06 0.10 6.02 -51.93 -0.31 -0.21 16 27 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 28 H 0.04 0.07 8.14 -51.92 -0.42 -0.35 16 29 H 0.12 0.14 7.82 -51.93 -0.41 -0.26 16 30 H 0.37 -1.11 8.70 45.56 0.40 -0.71 16 31 H 0.13 -0.13 4.88 -52.48 -0.26 -0.39 16 32 H 0.13 -0.31 8.06 -52.49 -0.42 -0.74 16 33 H 0.13 -0.22 6.30 -52.49 -0.33 -0.55 16 34 H 0.07 -0.21 7.66 -51.93 -0.40 -0.61 16 35 H 0.08 -0.07 7.66 -51.93 -0.40 -0.47 16 36 H 0.08 -0.28 7.21 -51.93 -0.37 -0.65 16 37 H 0.07 -0.11 7.21 -51.93 -0.37 -0.49 16 38 H 0.07 -0.11 7.48 -51.93 -0.39 -0.49 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 41 H 0.07 0.04 7.79 -51.93 -0.40 -0.36 16 42 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 43 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 44 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 45 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 46 H 0.06 0.06 7.96 -51.93 -0.41 -0.35 16 47 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 48 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 49 H 0.06 -0.05 7.79 -51.93 -0.40 -0.46 16 50 H 0.06 0.13 7.97 -51.93 -0.41 -0.28 16 51 H 0.05 0.07 8.14 -51.92 -0.42 -0.35 16 52 H 0.05 0.04 7.80 -51.93 -0.40 -0.37 16 LS Contribution 409.72 15.07 6.17 6.17 Total: 0.00 -6.21 409.72 -7.68 -13.89 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -8.65 Total: -10.95 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 2.01 Total: 2.42 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -1.45 Total: -4.65 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.77 Total: -6.88 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -6.21 -7.68 -13.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_204903_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.048 kcal (2) G-P(sol) polarization free energy of solvation -6.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds