Wall clock time and date at job start Mon Mar 8 2021 10:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 117.00084 * 2 1 4 4 C 1.38525 * 120.07232 * 270.25846 * 3 2 1 5 5 C 1.50698 * 120.00295 * 0.02562 * 4 3 2 6 6 O 1.42901 * 109.46982 * 75.27701 * 5 4 3 7 7 Si 1.86300 * 109.47106 * 195.27575 * 5 4 3 8 8 H 1.48503 * 109.47302 * 59.99607 * 7 5 4 9 9 H 1.48493 * 109.47235 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47111 * 299.99899 * 7 5 4 11 11 C 1.38284 * 119.99315 * 180.27577 * 4 3 2 12 12 C 1.38213 * 120.15087 * 359.72268 * 11 4 3 13 13 C 1.38284 * 120.14471 * 0.02562 * 12 11 4 14 14 C 1.38526 * 119.99985 * 359.97438 * 13 12 11 15 15 O 1.35995 * 120.07539 * 180.02562 * 14 13 12 16 16 C 1.42903 * 116.99587 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47405 * 64.99720 * 17 16 15 19 19 Si 1.63104 * 113.99972 * 179.97438 * 18 17 16 20 20 C 1.86297 * 109.47259 * 300.00387 * 19 18 17 21 21 C 1.86303 * 109.46923 * 60.00303 * 19 18 17 22 22 C 1.86299 * 109.46989 * 180.02562 * 19 18 17 23 23 C 1.53000 * 109.46921 * 59.99970 * 22 19 18 24 24 C 1.52997 * 109.46904 * 180.02562 * 22 19 18 25 25 C 1.52995 * 109.46973 * 300.00341 * 22 19 18 26 26 H 1.09001 * 109.47436 * 59.99312 * 1 2 3 27 27 H 1.08994 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46519 * 299.99754 * 1 2 3 29 29 H 1.08994 * 109.47066 * 315.27157 * 5 4 3 30 30 H 0.96691 * 114.00214 * 60.00247 * 6 5 4 31 31 H 1.08004 * 119.92392 * 179.74480 * 11 4 3 32 32 H 1.08002 * 119.92854 * 179.97438 * 12 11 4 33 33 H 1.07996 * 119.99864 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 35 35 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 36 36 H 1.09002 * 109.46642 * 184.99995 * 17 16 15 37 37 H 1.09002 * 109.47069 * 304.99524 * 17 16 15 38 38 H 1.08998 * 109.47381 * 59.99876 * 20 19 18 39 39 H 1.08999 * 109.47492 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46818 * 299.99971 * 20 19 18 41 41 H 1.08998 * 109.46674 * 59.99804 * 21 19 18 42 42 H 1.08991 * 109.47013 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47060 * 299.99722 * 21 19 18 44 44 H 1.08999 * 109.47189 * 60.00528 * 23 22 19 45 45 H 1.08998 * 109.46838 * 179.97438 * 23 22 19 46 46 H 1.08991 * 109.47403 * 299.99887 * 23 22 19 47 47 H 1.08994 * 109.47445 * 59.99723 * 24 22 19 48 48 H 1.09000 * 109.46663 * 180.02562 * 24 22 19 49 49 H 1.09002 * 109.47015 * 299.99953 * 24 22 19 50 50 H 1.08999 * 109.47775 * 60.00054 * 25 22 19 51 51 H 1.09008 * 109.47049 * 180.02562 * 25 22 19 52 52 H 1.09002 * 109.47582 * 299.99598 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3568 1.8327 -1.1988 5 6 2.0097 1.1658 -2.5048 6 8 0.6051 1.2823 -2.7406 7 14 2.9425 1.9907 -3.8905 8 1 4.4022 1.8698 -3.6454 9 1 2.6010 1.3332 -5.1774 10 1 2.5685 3.4265 -3.9531 11 6 2.9897 3.0622 -1.1969 12 6 3.3089 3.6768 -0.0008 13 6 2.9973 3.0647 1.1994 14 6 2.3632 1.8331 1.2046 15 8 2.0555 1.2300 2.3841 16 6 2.4159 1.9233 3.5805 17 6 1.9934 1.0959 4.7962 18 8 2.7395 -0.1224 4.8259 19 14 2.3749 -1.0932 6.0848 20 6 2.7218 -0.1971 7.6809 21 6 0.5714 -1.5547 6.0111 22 6 3.4154 -2.6363 6.0009 23 6 4.8963 -2.2567 6.0617 24 6 3.0728 -3.5471 7.1815 25 6 3.1310 -3.3723 4.6901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 2.2843 0.1120 -2.4589 30 1 0.2895 2.1947 -2.7935 31 1 3.2349 3.5434 -2.1322 32 1 3.8037 4.6368 -0.0035 33 1 3.2481 3.5469 2.1326 34 1 1.9129 2.8900 3.6059 35 1 3.4951 2.0746 3.6017 36 1 2.1872 1.6630 5.7067 37 1 0.9294 0.8689 4.7292 38 1 2.1133 0.7060 7.7302 39 1 2.4776 -0.8456 8.5222 40 1 3.7769 0.0730 7.7240 41 1 0.3685 -2.0790 5.0772 42 1 0.3278 -2.2038 6.8521 43 1 -0.0370 -0.6517 6.0604 44 1 5.0989 -1.7323 6.9955 45 1 5.5050 -3.1595 6.0130 46 1 5.1400 -1.6080 5.2204 47 1 2.0178 -3.8174 7.1377 48 1 3.6819 -4.4497 7.1325 49 1 3.2751 -3.0229 8.1155 50 1 3.3747 -2.7236 3.8487 51 1 3.7395 -4.2755 4.6412 52 1 2.0760 -3.6428 4.6467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_204903_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:19:26 Heat of formation + Delta-G solvation = -173.244332 kcal Electronic energy + Delta-G solvation = -29258.922774 eV Core-core repulsion = 25347.987372 eV Total energy + Delta-G solvation = -3910.935402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64596 -39.63306 -38.22739 -37.85473 -37.09975 -36.84224 -32.24859 -31.59264 -30.03196 -29.31165 -29.07618 -27.85134 -27.80256 -27.39989 -26.73694 -24.17951 -23.44460 -21.98366 -20.42746 -19.45877 -18.46297 -18.20244 -18.04891 -17.30338 -16.94310 -16.20109 -16.09785 -16.08383 -15.93810 -15.64630 -15.62246 -15.42859 -14.86914 -14.80194 -14.69982 -14.62441 -14.16006 -13.95631 -13.55632 -13.42915 -13.31288 -13.24739 -13.19212 -13.17539 -12.98037 -12.93720 -12.66207 -12.46279 -12.41699 -12.21139 -12.01056 -11.96747 -11.78956 -11.70914 -11.56361 -11.52037 -11.26221 -10.87263 -10.41378 -10.32027 -10.06494 -9.83188 -9.15793 0.06496 0.27958 1.15368 1.45246 1.52487 1.56306 1.77101 1.91106 2.13019 2.18398 2.43122 2.47127 2.95230 3.50342 3.67226 3.82463 4.04957 4.06301 4.09874 4.10731 4.12615 4.18356 4.28158 4.36837 4.43686 4.45435 4.46590 4.53170 4.61468 4.64177 4.73189 4.75927 4.78366 4.79197 4.79605 4.80583 4.81875 4.88318 4.97770 5.07207 5.07315 5.18261 5.19221 5.22245 5.32115 5.37450 5.38489 5.41986 5.48315 5.58016 5.62935 5.63888 6.20682 6.67570 6.69889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.060 3.940 4 C -0.109 4.109 5 C -0.083 4.083 6 O -0.547 6.547 7 Si 0.999 3.001 8 H -0.261 1.261 9 H -0.275 1.275 10 H -0.235 1.235 11 C -0.160 4.160 12 C -0.076 4.076 13 C -0.197 4.197 14 C 0.098 3.902 15 O -0.316 6.316 16 C 0.044 3.956 17 C 0.076 3.924 18 O -0.640 6.640 19 Si 1.313 2.687 20 C -0.512 4.512 21 C -0.518 4.518 22 C -0.384 4.384 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.135 4.135 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.038 0.962 29 H 0.107 0.893 30 H 0.388 0.612 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.048 0.952 51 H 0.047 0.953 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 6.007 2.456 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.262 6.262 3 C 0.015 3.985 4 C -0.110 4.110 5 C -0.192 4.192 6 O -0.354 6.354 7 Si 0.821 3.179 8 H -0.185 1.185 9 H -0.201 1.201 10 H -0.158 1.158 11 C -0.178 4.178 12 C -0.093 4.093 13 C -0.216 4.216 14 C 0.051 3.949 15 O -0.230 6.230 16 C -0.030 4.030 17 C 0.001 3.999 18 O -0.599 6.599 19 Si 1.443 2.557 20 C -0.614 4.614 21 C -0.620 4.620 22 C -0.427 4.427 23 C -0.193 4.193 24 C -0.197 4.197 25 C -0.192 4.192 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.237 0.763 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.038 5.400 1.616 5.636 hybrid contribution -0.485 -0.100 0.878 1.008 sum -0.524 5.300 2.494 5.881 Atomic orbital electron populations 1.23145 0.77948 1.03682 1.01104 1.85990 1.21120 1.24788 1.94266 1.18101 1.02280 0.88054 0.90033 1.20615 1.00244 0.95276 0.94833 1.25105 0.88333 1.06392 0.99379 1.86497 1.21064 1.33464 1.94354 0.85019 0.78159 0.79445 0.75254 1.18482 1.20065 1.15800 1.21210 1.01762 0.94723 1.00097 1.21313 0.96834 1.00460 0.90724 1.21541 1.03848 0.94924 1.01239 1.19723 0.96923 0.92406 0.85812 1.86215 1.77123 1.47267 1.12354 1.23342 1.01942 0.95852 0.81869 1.22359 0.95506 0.84953 0.97118 1.85413 1.68360 1.36770 1.69400 0.76263 0.62879 0.60644 0.55937 1.27002 1.05563 1.09360 1.19486 1.27120 1.24279 1.06100 1.04458 1.25950 1.05200 1.13875 0.97629 1.21524 0.94703 1.01147 1.01878 1.21594 1.01680 0.99263 0.97127 1.21513 1.01379 0.99917 0.96440 0.91468 0.88668 0.94324 0.87473 0.76297 0.83653 0.82159 0.82556 0.88266 0.90420 0.87506 0.91232 0.90469 0.90252 0.90837 0.91942 0.90310 0.90939 0.91613 0.93448 0.92938 0.91955 0.93209 0.91420 0.93306 0.93351 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 11.11 113.37 1.26 1.48 16 2 O -0.34 -4.05 9.53 -79.68 -0.76 -4.81 16 3 C 0.06 0.53 5.71 22.57 0.13 0.66 16 4 C -0.11 -0.48 5.27 -19.79 -0.10 -0.58 16 5 C -0.08 -0.21 2.38 71.24 0.17 -0.04 16 6 O -0.55 -0.98 10.84 -148.98 -1.62 -2.59 16 7 Si 1.00 -0.62 25.49 68.60 1.75 1.13 16 8 H -0.26 -0.32 7.11 99.48 0.71 0.38 16 9 H -0.28 -0.79 7.11 99.48 0.71 -0.09 16 10 H -0.23 0.82 6.73 99.48 0.67 1.49 16 11 C -0.16 -0.06 8.66 22.27 0.19 0.13 16 12 C -0.08 0.11 10.04 22.27 0.22 0.33 16 13 C -0.20 -0.14 9.04 22.35 0.20 0.06 16 14 C 0.10 0.66 6.70 22.57 0.15 0.81 16 15 O -0.32 -2.31 9.89 -73.45 -0.73 -3.03 16 16 C 0.04 -0.05 5.12 71.98 0.37 0.32 16 17 C 0.08 -0.17 5.50 71.98 0.40 0.23 16 18 O -0.64 -1.57 8.52 -144.34 -1.23 -2.80 16 19 Si 1.31 -1.61 8.45 68.60 0.58 -1.03 16 20 C -0.51 1.61 8.50 113.37 0.96 2.57 16 21 C -0.52 0.04 8.50 113.37 0.96 1.00 16 22 C -0.38 -0.60 0.53 -10.80 -0.01 -0.61 16 23 C -0.14 -0.29 7.85 71.98 0.56 0.28 16 24 C -0.14 0.00 7.85 71.98 0.56 0.57 16 25 C -0.14 -0.59 7.84 71.98 0.56 -0.02 16 26 H 0.07 0.34 6.02 -2.39 -0.01 0.32 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.04 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.11 0.51 7.82 -2.39 -0.02 0.50 16 30 H 0.39 -2.19 8.70 -74.06 -0.64 -2.84 16 31 H 0.15 -0.54 4.88 -2.91 -0.01 -0.56 16 32 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 33 H 0.16 -0.74 6.30 -2.91 -0.02 -0.76 16 34 H 0.10 -0.67 7.66 -2.39 -0.02 -0.69 16 35 H 0.08 -0.16 7.66 -2.39 -0.02 -0.18 16 36 H 0.11 -0.93 7.21 -2.39 -0.02 -0.95 16 37 H 0.07 -0.23 7.21 -2.39 -0.02 -0.24 16 38 H 0.08 -0.39 7.48 -2.39 -0.02 -0.41 16 39 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 40 H 0.07 -0.20 7.79 -2.38 -0.02 -0.22 16 41 H 0.06 0.15 7.79 -2.39 -0.02 0.13 16 42 H 0.08 -0.10 7.79 -2.39 -0.02 -0.12 16 43 H 0.07 -0.11 7.48 -2.39 -0.02 -0.13 16 44 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 45 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.05 0.18 7.96 -2.39 -0.02 0.16 16 47 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 48 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 50 H 0.05 0.33 7.97 -2.39 -0.02 0.31 16 51 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 52 H 0.06 0.18 7.80 -2.39 -0.02 0.17 16 Total: 0.00 -16.12 409.72 5.56 -10.56 By element: Atomic # 1 Polarization: -5.58 SS G_CDS: 0.96 Total: -4.63 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.60 Total: 7.19 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -4.33 Total: -13.23 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.33 Total: 0.10 kcal Total: -16.12 5.56 -10.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_204903_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.685 kcal (2) G-P(sol) polarization free energy of solvation -16.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds