Wall clock time and date at job start Mon Mar 8 2021 10:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35994 * 116.99745 * 2 1 4 4 C 1.39155 * 120.07385 * 90.00388 * 3 2 1 5 5 O 1.35996 * 120.07034 * 359.69614 * 4 3 2 6 6 C 1.42895 * 117.00028 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47431 * 180.02562 * 6 5 4 8 8 H 1.08998 * 112.84653 * 316.19773 * 7 6 5 9 9 C 1.53784 * 113.61289 * 87.50390 * 7 6 5 10 10 C 1.53775 * 87.08072 * 139.98379 * 9 7 6 11 11 H 1.08999 * 113.62079 * 89.11483 * 10 9 7 12 12 O 1.42901 * 113.61420 * 220.01548 * 10 9 7 13 13 C 1.53775 * 87.08220 * 334.56481 * 10 9 7 14 14 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 15 15 C 1.38247 * 119.99917 * 359.97438 * 14 4 3 16 16 C 1.38245 * 120.14442 * 0.02562 * 15 14 4 17 17 C 1.38237 * 120.15353 * 359.95521 * 16 15 14 18 18 C 1.50701 * 120.00527 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.47282 * 105.02376 * 18 17 16 20 20 Si 1.86295 * 109.46839 * 345.01854 * 18 17 16 21 21 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47718 * 299.99658 * 1 2 3 23 23 H 1.09004 * 109.47518 * 60.00293 * 1 2 3 24 24 H 1.09007 * 109.46889 * 300.00032 * 6 5 4 25 25 H 1.09000 * 109.47312 * 59.99992 * 6 5 4 26 26 H 1.09006 * 113.60795 * 254.53060 * 9 7 6 27 27 H 1.08996 * 113.61486 * 25.42892 * 9 7 6 28 28 H 0.96695 * 114.00332 * 277.49533 * 12 10 9 29 29 H 1.09006 * 113.61679 * 270.88890 * 13 10 9 30 30 H 1.09002 * 113.69093 * 139.99483 * 13 10 9 31 31 H 1.07996 * 120.00036 * 180.02562 * 14 4 3 32 32 H 1.08002 * 119.92731 * 179.97438 * 15 14 4 33 33 H 1.08004 * 119.92406 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.46630 * 225.01843 * 18 17 16 35 35 H 0.96703 * 113.99772 * 299.99971 * 19 18 17 36 36 H 1.48505 * 109.99762 * 180.02562 * 20 18 17 37 37 H 1.48495 * 110.00107 * 301.31954 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 2.3629 1.8330 1.2042 5 8 2.0501 1.2326 2.3837 6 6 2.4047 1.9288 3.5801 7 6 1.9771 1.1042 4.7959 8 1 0.9781 0.6813 4.6902 9 6 3.0346 0.0849 5.2517 10 6 2.6638 0.4639 6.6951 11 1 1.8530 -0.1352 7.1095 12 8 3.7900 0.5565 7.5699 13 6 2.2039 1.8211 6.1373 14 6 2.9971 3.0650 1.1989 15 6 3.3144 3.6739 -0.0009 16 6 2.9998 3.0567 -1.1973 17 6 2.3675 1.8274 -1.1992 18 6 2.0266 1.1573 -2.5053 19 8 2.9371 0.0813 -2.7404 20 14 2.1571 2.3955 -3.8910 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.4838 2.0806 3.6059 25 1 1.9012 2.8953 3.6010 26 1 2.7880 -0.9450 4.9936 27 1 4.0528 0.3592 4.9760 28 1 4.0839 -0.2939 7.9241 29 1 2.9951 2.5702 6.1037 30 1 1.2870 2.1942 6.5935 31 1 3.2443 3.5491 2.1321 32 1 3.8083 4.6344 -0.0037 33 1 3.2490 3.5358 -2.1326 34 1 1.0092 0.7688 -2.4596 35 1 3.8633 0.3542 -2.7929 36 1 1.8228 1.7471 -5.1846 37 1 1.2381 3.5350 -3.6422 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_204903_11354860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:30:18 Heat of formation + Delta-G solvation = -96.459420 kcal Electronic energy + Delta-G solvation = -20658.937597 eV Core-core repulsion = 17369.925278 eV Total energy + Delta-G solvation = -3289.012320 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71156 -40.54634 -39.14215 -38.21477 -37.19472 -36.04117 -32.20435 -31.20748 -29.18296 -27.99171 -26.82484 -26.52465 -23.91008 -23.43825 -22.08152 -20.69654 -19.30286 -18.68763 -18.26436 -17.96796 -17.33587 -17.11420 -16.55934 -16.22574 -16.16384 -15.73784 -15.66131 -15.34309 -14.85740 -14.54105 -14.37724 -14.07595 -13.54181 -13.45642 -13.23626 -13.09232 -12.72489 -12.59082 -12.33895 -12.32888 -12.02516 -11.79326 -11.72307 -11.30759 -10.98971 -10.82377 -10.33705 -9.84679 -9.16518 -5.04335 0.05666 0.26902 1.26543 1.63987 1.92624 2.07590 2.40470 2.92198 3.15587 3.36163 3.46267 3.48281 3.65804 3.70385 3.80256 3.85121 4.00674 4.11461 4.14909 4.17660 4.28098 4.31279 4.40933 4.44207 4.47686 4.56113 4.66751 4.68074 4.68794 4.80749 4.89659 5.02787 5.14490 5.19214 5.27372 5.34095 5.54382 6.15711 6.63911 6.64445 6.68382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.316 6.316 3 C 0.087 3.913 4 C 0.115 3.885 5 O -0.301 6.301 6 C 0.069 3.931 7 C -0.109 4.109 8 H 0.105 0.895 9 C -0.163 4.163 10 C 0.076 3.924 11 H 0.085 0.915 12 O -0.560 6.560 13 C -0.120 4.120 14 C -0.195 4.195 15 C -0.077 4.077 16 C -0.141 4.141 17 C -0.103 4.103 18 C -0.062 4.062 19 O -0.530 6.530 20 Si 0.687 3.313 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.381 0.619 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.377 0.623 36 H -0.252 1.252 37 H -0.256 1.256 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 2.565 1.188 2.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.232 6.232 3 C 0.042 3.958 4 C 0.068 3.932 5 O -0.214 6.214 6 C -0.006 4.006 7 C -0.127 4.127 8 H 0.123 0.877 9 C -0.200 4.200 10 C 0.017 3.983 11 H 0.103 0.897 12 O -0.366 6.366 13 C -0.157 4.157 14 C -0.214 4.214 15 C -0.095 4.095 16 C -0.159 4.159 17 C -0.104 4.104 18 C -0.172 4.172 19 O -0.335 6.335 20 Si 0.588 3.412 21 H 0.114 0.886 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.229 0.771 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.224 0.776 36 H -0.177 1.177 37 H -0.180 1.180 Dipole moment (debyes) X Y Z Total from point charges -0.152 2.901 0.456 2.940 hybrid contribution -0.413 -0.489 0.737 0.976 sum -0.565 2.412 1.193 2.750 Atomic orbital electron populations 1.22990 0.79279 1.03401 1.00222 1.86158 1.19469 1.23556 1.94000 1.17754 1.01261 0.87828 0.88974 1.19464 0.96245 0.91690 0.85762 1.86171 1.77111 1.46378 1.11780 1.22871 1.00110 0.95434 0.82222 1.22310 1.00843 0.97653 0.91908 0.87701 1.23770 0.99678 0.99983 0.96613 1.23285 0.88844 0.97776 0.88383 0.89741 1.86516 1.48746 1.35732 1.65601 1.23068 1.02171 0.96852 0.93640 1.21262 1.04537 0.95626 0.99949 1.20964 0.97658 0.99678 0.91228 1.20805 1.01841 0.94809 0.98402 1.20537 1.00071 0.94765 0.95006 1.25026 0.96259 0.96934 0.99025 1.86568 1.19864 1.32700 1.94325 0.94823 0.90934 0.78068 0.77345 0.88622 0.93468 0.94049 0.91499 0.91641 0.90696 0.89040 0.77149 0.88797 0.90130 0.84754 0.84746 0.84760 0.87350 0.77593 1.17708 1.18042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.06 10.91 101.05 1.10 1.17 16 2 O -0.32 -1.51 9.57 -34.22 -0.33 -1.84 16 3 C 0.09 0.32 5.71 -39.12 -0.22 0.09 16 4 C 0.11 0.32 6.70 -39.12 -0.26 0.06 16 5 O -0.30 -0.86 9.92 -34.23 -0.34 -1.20 16 6 C 0.07 -0.01 4.58 37.16 0.17 0.16 16 7 C -0.11 0.07 4.01 -89.81 -0.36 -0.29 16 8 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 9 C -0.16 0.05 7.46 -25.92 -0.19 -0.14 16 10 C 0.08 -0.05 5.21 -25.93 -0.14 -0.18 16 11 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 12 O -0.56 -0.35 13.67 -35.23 -0.48 -0.83 16 13 C -0.12 0.11 7.47 -25.92 -0.19 -0.08 16 14 C -0.19 -0.12 9.04 -39.46 -0.36 -0.47 16 15 C -0.08 0.04 10.04 -39.58 -0.40 -0.35 16 16 C -0.14 0.04 8.66 -39.58 -0.34 -0.30 16 17 C -0.10 -0.18 5.27 -104.50 -0.55 -0.73 16 18 C -0.06 -0.08 2.37 36.01 0.09 0.01 16 19 O -0.53 -1.08 12.88 -35.23 -0.45 -1.53 16 20 Si 0.69 -0.40 29.92 -169.99 -5.09 -5.49 16 21 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 22 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 23 H 0.04 0.04 7.11 -51.93 -0.37 -0.33 16 24 H 0.07 -0.04 7.36 -51.93 -0.38 -0.42 16 25 H 0.07 -0.08 7.66 -51.93 -0.40 -0.48 16 26 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.09 0.03 7.89 -51.93 -0.41 -0.38 16 28 H 0.38 -1.25 9.12 45.56 0.42 -0.84 16 29 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.13 -0.18 6.30 -52.49 -0.33 -0.51 16 32 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16 33 H 0.14 -0.40 5.12 -52.48 -0.27 -0.67 16 34 H 0.11 0.23 6.57 -51.93 -0.34 -0.11 16 35 H 0.38 -0.80 8.70 45.56 0.40 -0.40 16 36 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 37 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 LS Contribution 308.46 15.07 4.65 4.65 Total: 0.00 -7.87 308.46 -7.96 -15.83 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -4.27 Total: -8.53 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.66 Total: -1.05 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -1.60 Total: -5.41 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.09 Total: -5.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -7.87 -7.96 -15.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_204903_11354860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.628 kcal (2) G-P(sol) polarization free energy of solvation -7.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds