Wall clock time and date at job start Mon Mar 8 2021 11:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35998 * 117.00077 * 2 1 4 4 C 1.38524 * 120.07213 * 269.98058 * 3 2 1 5 5 C 1.50704 * 119.99901 * 359.97438 * 4 3 2 6 6 O 1.42900 * 109.47028 * 75.00470 * 5 4 3 7 7 Si 1.86304 * 109.46964 * 195.00115 * 5 4 3 8 8 H 1.48497 * 109.46867 * 59.99820 * 7 5 4 9 9 H 1.48500 * 109.47063 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47115 * 300.00320 * 7 5 4 11 11 C 1.38277 * 119.99944 * 180.02562 * 4 3 2 12 12 C 1.38210 * 120.14810 * 359.97438 * 11 4 3 13 13 C 1.38292 * 120.14334 * 359.76849 * 12 11 4 14 14 C 1.38517 * 120.00018 * 0.50805 * 13 12 11 15 15 O 1.35987 * 120.07682 * 179.74491 * 14 13 12 16 16 C 1.42905 * 116.99717 * 359.72472 * 15 14 13 17 17 C 1.50701 * 109.47046 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00243 * 89.99998 * 17 16 15 19 19 C 1.38234 * 120.00240 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 Si 1.86796 * 120.00338 * 179.72477 * 20 19 18 22 22 C 1.86298 * 109.47345 * 89.99399 * 21 20 19 23 23 C 1.86292 * 109.47215 * 209.99657 * 21 20 19 24 24 C 1.86304 * 109.46695 * 329.99459 * 21 20 19 25 25 C 1.38238 * 119.99752 * 359.47832 * 20 19 18 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 20 19 27 27 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46861 * 300.00160 * 1 2 3 29 29 H 1.08996 * 109.47194 * 59.99494 * 1 2 3 30 30 H 1.08994 * 109.47146 * 314.99976 * 5 4 3 31 31 H 0.96696 * 114.00291 * 59.99992 * 6 5 4 32 32 H 1.07999 * 119.93037 * 180.02562 * 11 4 3 33 33 H 1.07997 * 119.92792 * 180.02562 * 12 11 4 34 34 H 1.08001 * 119.99800 * 180.27961 * 13 12 11 35 35 H 1.08996 * 109.47095 * 59.99943 * 16 15 14 36 36 H 1.08999 * 109.47350 * 299.99879 * 16 15 14 37 37 H 1.07999 * 119.99751 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47461 * 60.00145 * 22 21 20 40 40 H 1.08995 * 109.47041 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.46941 * 300.00096 * 22 21 20 42 42 H 1.08997 * 109.47556 * 59.99827 * 23 21 20 43 43 H 1.09003 * 109.47107 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47298 * 299.99936 * 23 21 20 45 45 H 1.09004 * 109.47045 * 60.00345 * 24 21 20 46 46 H 1.09003 * 109.47110 * 180.02562 * 24 21 20 47 47 H 1.09000 * 109.47158 * 300.00133 * 24 21 20 48 48 H 1.07999 * 119.99927 * 180.24100 * 25 20 19 49 49 H 1.08001 * 120.00310 * 179.72165 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3620 1.8300 -1.1988 5 6 2.0215 1.1596 -2.5048 6 8 0.6170 1.2689 -2.7444 7 14 2.9539 1.9873 -3.8892 8 1 4.4134 1.8738 -3.6402 9 1 2.6180 1.3271 -5.1763 10 1 2.5730 3.4211 -3.9547 11 6 2.9903 3.0618 -1.1970 12 6 3.3044 3.6791 -0.0010 13 6 2.9874 3.0698 1.1993 14 6 2.3632 1.8332 1.2046 15 8 2.0554 1.2302 2.3840 16 6 2.4103 1.9264 3.5805 17 6 1.9950 1.1111 4.7780 18 6 2.8712 0.1936 5.3271 19 6 2.4900 -0.5546 6.4252 20 6 1.2307 -0.3893 6.9708 21 14 0.7129 -1.4058 8.4499 22 6 1.1686 -0.5028 10.0144 23 6 -1.1297 -1.6762 8.4032 24 6 1.5834 -3.0524 8.4072 25 6 0.3565 0.5320 6.4250 26 6 0.7376 1.2802 5.3269 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 2.3012 0.1072 -2.4568 31 1 0.2971 2.1798 -2.7994 32 1 3.2353 3.5431 -2.1323 33 1 3.7947 4.6414 -0.0038 34 1 3.2298 3.5563 2.1325 35 1 1.9032 2.8909 3.6036 36 1 3.4888 2.0822 3.6039 37 1 3.8532 0.0608 4.8977 38 1 3.1745 -1.2717 6.8539 39 1 0.6593 0.4605 10.0394 40 1 0.8668 -1.0962 10.8774 41 1 2.2467 -0.3447 10.0417 42 1 -1.3964 -2.2045 7.4879 43 1 -1.4319 -2.2698 9.2661 44 1 -1.6391 -0.7128 8.4281 45 1 2.6616 -2.8942 8.4346 46 1 1.2809 -3.6458 9.2700 47 1 1.3168 -3.5807 7.4918 48 1 -0.6260 0.6639 6.8537 49 1 0.0530 1.9968 4.8977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_204903_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:06 Heat of formation + Delta-G solvation = -98.142656 kcal Electronic energy + Delta-G solvation = -27671.329440 eV Core-core repulsion = 23880.503560 eV Total energy + Delta-G solvation = -3790.825880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66539 -40.25893 -39.08633 -38.12274 -37.24453 -33.16406 -32.19109 -31.88965 -30.66851 -29.57701 -28.44941 -28.42548 -27.69730 -27.56164 -26.33020 -23.48910 -23.42357 -22.81435 -21.69771 -19.39458 -18.35510 -18.33864 -17.54808 -17.22219 -17.05969 -16.47782 -16.06107 -16.01760 -15.85688 -15.61666 -15.34634 -15.12432 -14.71498 -14.37076 -14.33409 -14.22501 -14.15600 -14.02070 -13.86881 -13.58942 -13.35074 -13.28773 -13.25813 -13.20883 -13.15260 -13.11059 -12.57464 -12.37980 -12.25539 -12.13178 -11.95515 -11.80752 -11.56686 -11.06058 -10.91351 -10.84280 -10.74250 -10.42680 -9.82484 -9.78390 -9.68767 -9.13843 0.07604 0.16353 0.28977 0.54364 1.13516 1.40966 1.53734 1.69293 1.83970 1.86375 1.91829 2.25870 2.42757 2.53511 3.01490 3.03748 3.45209 3.61529 3.70004 3.77744 3.93954 3.97083 4.11848 4.14871 4.20644 4.29134 4.40454 4.49934 4.54157 4.61326 4.66463 4.69328 4.70786 4.71545 4.74282 4.75038 4.75534 4.76408 4.78793 4.99614 5.01139 5.14666 5.15388 5.22243 5.35468 5.39807 5.45228 5.49669 5.52585 5.56057 5.61530 5.61781 6.10454 6.19066 6.52003 6.75099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.323 6.323 3 C 0.093 3.907 4 C -0.102 4.102 5 C -0.078 4.078 6 O -0.534 6.534 7 Si 0.957 3.043 8 H -0.248 1.248 9 H -0.253 1.253 10 H -0.252 1.252 11 C -0.154 4.154 12 C -0.077 4.077 13 C -0.195 4.195 14 C 0.113 3.887 15 O -0.296 6.296 16 C 0.098 3.902 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.091 4.091 20 C -0.361 4.361 21 Si 1.060 2.940 22 C -0.449 4.449 23 C -0.450 4.450 24 C -0.450 4.450 25 C -0.092 4.092 26 C -0.107 4.107 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.374 0.626 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 2.602 1.898 3.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.239 6.239 3 C 0.048 3.952 4 C -0.103 4.103 5 C -0.188 4.188 6 O -0.339 6.339 7 Si 0.779 3.221 8 H -0.172 1.172 9 H -0.176 1.176 10 H -0.176 1.176 11 C -0.172 4.172 12 C -0.095 4.095 13 C -0.214 4.214 14 C 0.067 3.933 15 O -0.209 6.209 16 C 0.023 3.977 17 C -0.088 4.088 18 C -0.123 4.123 19 C -0.109 4.109 20 C -0.402 4.402 21 Si 1.251 2.749 22 C -0.556 4.556 23 C -0.557 4.557 24 C -0.558 4.558 25 C -0.110 4.110 26 C -0.125 4.125 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.221 0.779 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.141 0.859 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.283 2.017 1.226 2.377 hybrid contribution -0.168 0.930 0.415 1.032 sum 0.115 2.947 1.642 3.375 Atomic orbital electron populations 1.23105 0.78377 1.03305 1.01090 1.86025 1.20327 1.23504 1.94057 1.17733 1.00832 0.87855 0.88808 1.20459 1.00081 0.94703 0.95065 1.24985 0.88025 1.06918 0.98858 1.86541 1.21014 1.32046 1.94309 0.85606 0.79630 0.79211 0.77615 1.17170 1.17644 1.17597 1.20965 1.02167 0.95132 0.98958 1.20926 0.97694 0.99653 0.91271 1.21252 1.04693 0.95563 0.99887 1.19490 0.96358 0.91667 0.85777 1.86276 1.77239 1.45952 1.11447 1.21678 1.00287 0.94484 0.81219 1.19428 0.95228 0.98567 0.95563 1.21150 0.99488 0.95252 0.96413 1.21081 0.96319 0.98175 0.95342 1.27484 0.96837 1.04478 1.11428 0.78183 0.66949 0.65780 0.63946 1.26120 1.05571 1.08338 1.15598 1.26134 1.19996 1.04897 1.04719 1.26138 1.07953 1.16957 1.04719 1.21070 0.99347 0.95192 0.95362 1.21130 0.95088 0.99709 0.96538 0.89203 0.94171 0.91750 0.85979 0.77938 0.85290 0.84958 0.84781 0.91074 0.90974 0.86118 0.85865 0.91175 0.91001 0.91166 0.91022 0.90925 0.91183 0.91164 0.90932 0.91010 0.85900 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.09 11.10 101.05 1.12 1.21 16 2 O -0.32 -1.56 9.53 -34.22 -0.33 -1.89 16 3 C 0.09 0.35 5.71 -39.12 -0.22 0.12 16 4 C -0.10 -0.19 5.27 -104.50 -0.55 -0.74 16 5 C -0.08 -0.06 2.37 36.01 0.09 0.03 16 6 O -0.53 -0.28 10.85 -35.23 -0.38 -0.66 16 7 Si 0.96 -0.27 25.49 -169.99 -4.33 -4.60 16 8 H -0.25 -0.14 7.11 56.52 0.40 0.27 16 9 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 10 H -0.25 0.20 6.73 56.52 0.38 0.58 16 11 C -0.15 -0.09 8.65 -39.58 -0.34 -0.43 16 12 C -0.08 -0.01 10.04 -39.57 -0.40 -0.40 16 13 C -0.20 -0.18 9.04 -39.46 -0.36 -0.53 16 14 C 0.11 0.36 6.70 -39.12 -0.26 0.10 16 15 O -0.30 -1.09 9.91 -34.18 -0.34 -1.43 16 16 C 0.10 0.09 4.87 36.01 0.18 0.27 16 17 C -0.09 -0.16 5.51 -104.62 -0.58 -0.73 16 18 C -0.10 -0.17 9.70 -39.58 -0.38 -0.55 16 19 C -0.09 -0.07 9.29 -39.58 -0.37 -0.44 16 20 C -0.36 -0.05 4.59 -39.58 -0.18 -0.23 16 21 Si 1.06 -2.46 12.32 -169.99 -2.09 -4.55 16 22 C -0.45 0.67 8.65 101.05 0.87 1.54 16 23 C -0.45 0.72 8.54 101.05 0.86 1.58 16 24 C -0.45 0.68 8.53 101.05 0.86 1.54 16 25 C -0.09 -0.06 9.29 -39.58 -0.37 -0.42 16 26 C -0.11 -0.15 9.70 -39.58 -0.38 -0.53 16 27 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.04 0.10 8.14 -51.92 -0.42 -0.32 16 29 H 0.06 0.12 6.04 -51.93 -0.31 -0.19 16 30 H 0.12 0.14 7.82 -51.93 -0.41 -0.26 16 31 H 0.37 -1.07 8.70 45.56 0.40 -0.68 16 32 H 0.13 -0.14 4.88 -52.49 -0.26 -0.39 16 33 H 0.13 -0.30 8.06 -52.49 -0.42 -0.73 16 34 H 0.13 -0.15 6.30 -52.49 -0.33 -0.48 16 35 H 0.07 -0.04 7.59 -51.93 -0.39 -0.44 16 36 H 0.07 -0.03 7.62 -51.93 -0.40 -0.42 16 37 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.12 -0.14 7.43 -52.49 -0.39 -0.53 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 43 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 44 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 45 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 46 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 47 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 48 H 0.12 -0.17 7.44 -52.49 -0.39 -0.56 16 49 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 LS Contribution 402.01 15.07 6.06 6.06 Total: 0.00 -6.56 402.01 -8.93 -15.49 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: -7.10 Total: -9.79 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.41 Total: 1.37 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -1.05 Total: -3.98 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: -6.43 Total: -9.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -6.56 -8.93 -15.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_204903_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.651 kcal (2) G-P(sol) polarization free energy of solvation -6.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds