Wall clock time and date at job start Mon Mar 8 2021 11:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35998 * 117.00077 * 2 1 4 4 C 1.38524 * 120.07213 * 269.98058 * 3 2 1 5 5 C 1.50704 * 119.99901 * 359.97438 * 4 3 2 6 6 O 1.42900 * 109.47028 * 75.00470 * 5 4 3 7 7 Si 1.86304 * 109.46964 * 195.00115 * 5 4 3 8 8 H 1.48497 * 109.46867 * 59.99820 * 7 5 4 9 9 H 1.48500 * 109.47063 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47115 * 300.00320 * 7 5 4 11 11 C 1.38277 * 119.99944 * 180.02562 * 4 3 2 12 12 C 1.38210 * 120.14810 * 359.97438 * 11 4 3 13 13 C 1.38292 * 120.14334 * 359.76849 * 12 11 4 14 14 C 1.38517 * 120.00018 * 0.50805 * 13 12 11 15 15 O 1.35987 * 120.07682 * 179.74491 * 14 13 12 16 16 C 1.42905 * 116.99717 * 359.72472 * 15 14 13 17 17 C 1.50701 * 109.47046 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00243 * 89.99998 * 17 16 15 19 19 C 1.38234 * 120.00240 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 Si 1.86796 * 120.00338 * 179.72477 * 20 19 18 22 22 C 1.86298 * 109.47345 * 89.99399 * 21 20 19 23 23 C 1.86292 * 109.47215 * 209.99657 * 21 20 19 24 24 C 1.86304 * 109.46695 * 329.99459 * 21 20 19 25 25 C 1.38238 * 119.99752 * 359.47832 * 20 19 18 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 20 19 27 27 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46861 * 300.00160 * 1 2 3 29 29 H 1.08996 * 109.47194 * 59.99494 * 1 2 3 30 30 H 1.08994 * 109.47146 * 314.99976 * 5 4 3 31 31 H 0.96696 * 114.00291 * 59.99992 * 6 5 4 32 32 H 1.07999 * 119.93037 * 180.02562 * 11 4 3 33 33 H 1.07997 * 119.92792 * 180.02562 * 12 11 4 34 34 H 1.08001 * 119.99800 * 180.27961 * 13 12 11 35 35 H 1.08996 * 109.47095 * 59.99943 * 16 15 14 36 36 H 1.08999 * 109.47350 * 299.99879 * 16 15 14 37 37 H 1.07999 * 119.99751 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47461 * 60.00145 * 22 21 20 40 40 H 1.08995 * 109.47041 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.46941 * 300.00096 * 22 21 20 42 42 H 1.08997 * 109.47556 * 59.99827 * 23 21 20 43 43 H 1.09003 * 109.47107 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47298 * 299.99936 * 23 21 20 45 45 H 1.09004 * 109.47045 * 60.00345 * 24 21 20 46 46 H 1.09003 * 109.47110 * 180.02562 * 24 21 20 47 47 H 1.09000 * 109.47158 * 300.00133 * 24 21 20 48 48 H 1.07999 * 119.99927 * 180.24100 * 25 20 19 49 49 H 1.08001 * 120.00310 * 179.72165 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3620 1.8300 -1.1988 5 6 2.0215 1.1596 -2.5048 6 8 0.6170 1.2689 -2.7444 7 14 2.9539 1.9873 -3.8892 8 1 4.4134 1.8738 -3.6402 9 1 2.6180 1.3271 -5.1763 10 1 2.5730 3.4211 -3.9547 11 6 2.9903 3.0618 -1.1970 12 6 3.3044 3.6791 -0.0010 13 6 2.9874 3.0698 1.1993 14 6 2.3632 1.8332 1.2046 15 8 2.0554 1.2302 2.3840 16 6 2.4103 1.9264 3.5805 17 6 1.9950 1.1111 4.7780 18 6 2.8712 0.1936 5.3271 19 6 2.4900 -0.5546 6.4252 20 6 1.2307 -0.3893 6.9708 21 14 0.7129 -1.4058 8.4499 22 6 1.1686 -0.5028 10.0144 23 6 -1.1297 -1.6762 8.4032 24 6 1.5834 -3.0524 8.4072 25 6 0.3565 0.5320 6.4250 26 6 0.7376 1.2802 5.3269 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 2.3012 0.1072 -2.4568 31 1 0.2971 2.1798 -2.7994 32 1 3.2353 3.5431 -2.1323 33 1 3.7947 4.6414 -0.0038 34 1 3.2298 3.5563 2.1325 35 1 1.9032 2.8909 3.6036 36 1 3.4888 2.0822 3.6039 37 1 3.8532 0.0608 4.8977 38 1 3.1745 -1.2717 6.8539 39 1 0.6593 0.4605 10.0394 40 1 0.8668 -1.0962 10.8774 41 1 2.2467 -0.3447 10.0417 42 1 -1.3964 -2.2045 7.4879 43 1 -1.4319 -2.2698 9.2661 44 1 -1.6391 -0.7128 8.4281 45 1 2.6616 -2.8942 8.4346 46 1 1.2809 -3.6458 9.2700 47 1 1.3168 -3.5807 7.4918 48 1 -0.6260 0.6639 6.8537 49 1 0.0530 1.9968 4.8977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_204903_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:28:05 Heat of formation + Delta-G solvation = -89.262658 kcal Electronic energy + Delta-G solvation = -27670.944375 eV Core-core repulsion = 23880.503560 eV Total energy + Delta-G solvation = -3790.440815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.76383 -40.30850 -39.18004 -38.26789 -37.27890 -33.19273 -32.24688 -31.91180 -30.75739 -29.44490 -28.31014 -28.28056 -27.86107 -27.60183 -26.39060 -23.51724 -23.50908 -22.86565 -21.74477 -19.49490 -18.44891 -18.42048 -17.57585 -17.31899 -17.12809 -16.57903 -16.08464 -16.07951 -15.89984 -15.67594 -15.44094 -15.19888 -14.74097 -14.40620 -14.36602 -14.14976 -14.06758 -13.93492 -13.74972 -13.56944 -13.38328 -13.25668 -13.16100 -13.14014 -13.12639 -12.98068 -12.67265 -12.43090 -12.28171 -12.13280 -11.98423 -11.82661 -11.58274 -10.99616 -10.89855 -10.79921 -10.77333 -10.44234 -9.89166 -9.83688 -9.70894 -9.24919 0.00522 0.12928 0.20756 0.49107 1.13517 1.44025 1.55000 1.81731 1.88961 1.98360 2.00912 2.26110 2.36469 2.65285 2.89710 2.98841 3.45481 3.61965 3.68039 3.77390 3.93672 3.96953 4.10475 4.12888 4.20223 4.28097 4.36583 4.41289 4.45917 4.49994 4.56321 4.68353 4.73878 4.83565 4.83687 4.83729 4.87361 4.88089 4.88301 4.89840 4.97277 5.12135 5.12846 5.16305 5.31298 5.37507 5.53869 5.55595 5.57010 5.58023 5.66978 5.69026 6.07724 6.10282 6.59247 6.67481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.062 3.938 4 C -0.107 4.107 5 C -0.084 4.084 6 O -0.547 6.547 7 Si 0.999 3.001 8 H -0.259 1.259 9 H -0.274 1.274 10 H -0.235 1.235 11 C -0.156 4.156 12 C -0.074 4.074 13 C -0.196 4.196 14 C 0.095 3.905 15 O -0.319 6.319 16 C 0.097 3.903 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.374 4.374 21 Si 1.127 2.873 22 C -0.460 4.460 23 C -0.462 4.462 24 C -0.464 4.464 25 C -0.103 4.103 26 C -0.122 4.122 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.388 0.612 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.141 0.859 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 3.830 2.168 4.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.017 3.983 4 C -0.107 4.107 5 C -0.192 4.192 6 O -0.354 6.354 7 Si 0.821 3.179 8 H -0.183 1.183 9 H -0.200 1.200 10 H -0.158 1.158 11 C -0.174 4.174 12 C -0.092 4.092 13 C -0.214 4.214 14 C 0.049 3.951 15 O -0.233 6.233 16 C 0.023 3.977 17 C -0.104 4.104 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.412 4.412 21 Si 1.314 2.686 22 C -0.567 4.567 23 C -0.569 4.569 24 C -0.571 4.571 25 C -0.121 4.121 26 C -0.140 4.140 27 H 0.115 0.885 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.237 0.763 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.158 0.842 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.490 3.270 1.499 3.630 hybrid contribution -0.244 0.533 0.344 0.680 sum 0.246 3.803 1.843 4.233 Atomic orbital electron populations 1.23134 0.77859 1.03736 1.01005 1.85979 1.21168 1.24779 1.94257 1.18092 1.02121 0.88131 0.89934 1.20627 1.00094 0.95240 0.94785 1.25132 0.88380 1.06481 0.99247 1.86500 1.21056 1.33571 1.94263 0.85024 0.78218 0.79431 0.75264 1.18320 1.19973 1.15799 1.21236 1.01498 0.94573 1.00121 1.21320 0.96730 1.00515 0.90613 1.21515 1.03960 0.94724 1.01240 1.19709 0.97296 0.92638 0.85450 1.86233 1.77754 1.47075 1.12252 1.21793 1.01028 0.94676 0.80168 1.19627 0.95622 0.99078 0.96053 1.21376 0.99925 0.95746 0.97082 1.21391 0.97062 0.98415 0.95281 1.28096 0.96496 1.04450 1.12205 0.77180 0.65594 0.64020 0.61814 1.26250 1.05511 1.08562 1.16363 1.26277 1.20866 1.05149 1.04650 1.26297 1.08396 1.17745 1.04622 1.21400 1.00306 0.95118 0.95267 1.21370 0.95254 1.00292 0.97077 0.88547 0.94681 0.91302 0.87361 0.76281 0.83411 0.82020 0.82918 0.89758 0.90000 0.85723 0.84311 0.91274 0.90567 0.91348 0.91498 0.90538 0.90822 0.90927 0.90538 0.91540 0.84152 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 11.10 113.37 1.26 1.51 16 2 O -0.34 -4.13 9.53 -79.68 -0.76 -4.89 16 3 C 0.06 0.56 5.71 22.57 0.13 0.69 16 4 C -0.11 -0.46 5.27 -19.79 -0.10 -0.56 16 5 C -0.08 -0.19 2.37 71.24 0.17 -0.02 16 6 O -0.55 -0.95 10.85 -148.98 -1.62 -2.57 16 7 Si 1.00 -0.96 25.49 68.60 1.75 0.79 16 8 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 9 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 10 H -0.23 0.88 6.73 99.48 0.67 1.55 16 11 C -0.16 -0.04 8.65 22.27 0.19 0.16 16 12 C -0.07 0.09 10.04 22.28 0.22 0.31 16 13 C -0.20 -0.30 9.04 22.35 0.20 -0.09 16 14 C 0.09 0.71 6.70 22.57 0.15 0.86 16 15 O -0.32 -2.89 9.91 -79.56 -0.79 -3.68 16 16 C 0.10 0.28 4.87 71.24 0.35 0.62 16 17 C -0.10 -0.51 5.51 -19.86 -0.11 -0.62 16 18 C -0.12 -0.55 9.70 22.27 0.22 -0.34 16 19 C -0.10 -0.23 9.29 22.27 0.21 -0.03 16 20 C -0.37 -0.23 4.59 22.27 0.10 -0.13 16 21 Si 1.13 -5.58 12.32 68.60 0.85 -4.74 16 22 C -0.46 1.60 8.65 113.37 0.98 2.58 16 23 C -0.46 1.65 8.54 113.37 0.97 2.62 16 24 C -0.46 1.49 8.53 113.37 0.97 2.45 16 25 C -0.10 -0.18 9.29 22.27 0.21 0.03 16 26 C -0.12 -0.46 9.70 22.27 0.22 -0.24 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.07 0.37 6.04 -2.39 -0.01 0.36 16 30 H 0.11 0.47 7.82 -2.39 -0.02 0.45 16 31 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 32 H 0.15 -0.60 4.88 -2.91 -0.01 -0.62 16 33 H 0.16 -1.19 8.06 -2.91 -0.02 -1.21 16 34 H 0.15 -0.48 6.30 -2.91 -0.02 -0.50 16 35 H 0.08 -0.06 7.59 -2.39 -0.02 -0.08 16 36 H 0.08 0.00 7.62 -2.39 -0.02 -0.02 16 37 H 0.12 0.30 8.06 -2.91 -0.02 0.28 16 38 H 0.14 -0.27 7.43 -2.91 -0.02 -0.30 16 39 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 40 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 41 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 42 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 43 H 0.08 -0.32 7.96 -2.39 -0.02 -0.33 16 44 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 45 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 46 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 47 H 0.07 -0.13 7.96 -2.39 -0.02 -0.14 16 48 H 0.14 -0.39 7.44 -2.91 -0.02 -0.41 16 49 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 Total: 0.00 -16.43 402.01 6.77 -9.66 By element: Atomic # 1 Polarization: -5.40 SS G_CDS: 1.02 Total: -4.38 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.32 Total: 9.81 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -3.16 Total: -11.14 kcal Atomic # 14 Polarization: -6.54 SS G_CDS: 2.59 Total: -3.95 kcal Total: -16.43 6.77 -9.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_204903_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.601 kcal (2) G-P(sol) polarization free energy of solvation -16.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds