Wall clock time and date at job start Mon Mar 8 2021 08:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36010 * 116.99714 * 2 1 4 4 C 1.39150 * 120.06467 * 180.02562 * 3 2 1 5 5 O 1.35993 * 120.06510 * 359.97438 * 4 3 2 6 6 C 1.42903 * 116.99832 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47145 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47246 * 305.00097 * 7 6 5 9 9 C 1.53004 * 109.47110 * 65.00063 * 7 6 5 10 10 C 1.53001 * 109.47199 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46797 * 299.99753 * 10 9 7 12 12 H 1.08996 * 109.47204 * 300.00252 * 11 10 9 13 13 O 1.42903 * 109.46920 * 180.02562 * 11 10 9 14 14 C 1.53004 * 109.47044 * 60.00152 * 11 10 9 15 15 C 1.52995 * 109.47191 * 185.00038 * 7 6 5 16 16 C 1.38563 * 119.86638 * 179.97438 * 4 3 2 17 17 C 1.38316 * 119.98658 * 359.97438 * 16 4 3 18 18 Br 1.89105 * 119.93558 * 179.97438 * 17 16 4 19 19 C 1.38339 * 120.13079 * 359.97438 * 17 16 4 20 20 C 1.50699 * 119.93281 * 180.02562 * 19 17 16 21 21 O 1.42903 * 109.47455 * 75.15112 * 20 19 17 22 22 Si 1.86301 * 109.46956 * 195.15394 * 20 19 17 23 23 C 1.38240 * 120.13342 * 359.78740 * 19 17 16 24 24 H 1.09002 * 109.47460 * 60.00300 * 1 2 3 25 25 H 1.09009 * 109.46607 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47334 * 299.99603 * 1 2 3 27 27 H 1.09005 * 109.47086 * 300.00386 * 6 5 4 28 28 H 1.09002 * 109.47224 * 60.00331 * 6 5 4 29 29 H 1.09004 * 109.47260 * 299.99872 * 9 7 6 30 30 H 1.08996 * 109.47039 * 59.99907 * 9 7 6 31 31 H 1.08997 * 109.47463 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.47291 * 59.99493 * 10 9 7 33 33 H 0.96696 * 114.00192 * 60.00154 * 13 11 10 34 34 H 1.08999 * 109.47124 * 179.97438 * 14 11 10 35 35 H 1.08996 * 109.47039 * 59.99998 * 14 11 10 36 36 H 1.09004 * 109.47305 * 299.99550 * 15 7 6 37 37 H 1.08997 * 109.47311 * 60.00069 * 15 7 6 38 38 H 1.07996 * 120.00442 * 179.97438 * 16 4 3 39 39 H 1.09002 * 109.46941 * 315.15353 * 20 19 17 40 40 H 0.96692 * 113.99715 * 60.00213 * 21 20 19 41 41 H 1.48501 * 109.99990 * 65.27079 * 22 20 19 42 42 H 1.48500 * 109.99951 * 186.59099 * 22 20 19 43 43 H 1.07995 * 119.99636 * 180.23547 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4359 1.2863 -0.0005 5 8 4.1793 0.1475 -0.0005 6 6 5.6001 0.3002 -0.0005 7 6 6.2613 -1.0795 -0.0012 8 1 5.8868 -1.6622 0.8403 9 6 5.9319 -1.8023 -1.3089 10 6 6.5926 -3.1823 -1.3093 11 6 8.1090 -3.0217 -1.1833 12 1 8.4838 -2.4391 -2.0248 13 8 8.7262 -4.3106 -1.1843 14 6 8.4384 -2.2989 0.1244 15 6 7.7776 -0.9184 0.1245 16 6 4.0607 2.5232 -0.0011 17 6 3.3030 3.6803 -0.0016 18 35 4.1571 5.3675 -0.0016 19 6 1.9216 3.6059 -0.0021 20 6 1.1005 4.8696 -0.0033 21 8 1.1310 5.4563 -1.3060 22 14 -0.6597 4.4667 0.4554 23 6 1.2930 2.3747 -0.0066 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 5.9064 0.8500 -0.8905 28 1 5.9065 0.8499 0.8895 29 1 4.8516 -1.9170 -1.3985 30 1 6.3064 -1.2195 -2.1504 31 1 6.3583 -3.6970 -2.2410 32 1 6.2178 -3.7648 -0.4677 33 1 8.5594 -4.8259 -1.9853 34 1 9.5187 -2.1849 0.2144 35 1 8.0636 -2.8814 0.9659 36 1 8.1521 -0.3357 -0.7171 37 1 8.0123 -0.4035 1.0561 38 1 5.1389 2.5835 -0.0011 39 1 1.5132 5.5717 0.7211 40 1 0.7780 4.8861 -2.0025 41 1 -0.7198 3.9744 1.8551 42 1 -1.5127 5.6728 0.3040 43 1 0.2145 2.3192 -0.0108 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_2162984_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:18:10 Heat of formation + Delta-G solvation = -133.219954 kcal Electronic energy + Delta-G solvation = -26321.919589 eV Core-core repulsion = 22380.419972 eV Total energy + Delta-G solvation = -3941.499617 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.066 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89064 -40.39109 -39.34648 -39.01624 -37.15627 -36.59561 -32.99955 -32.50672 -31.81768 -31.48787 -30.09688 -28.36521 -26.95684 -25.96435 -23.78197 -23.60312 -22.64557 -22.00645 -20.87919 -19.67300 -18.58156 -18.20764 -18.01443 -17.42752 -17.28337 -16.63830 -16.25216 -16.21376 -15.92441 -15.88715 -15.51273 -15.47706 -14.78496 -14.66635 -14.38648 -14.29099 -13.88323 -13.82545 -13.52368 -13.30560 -13.19318 -12.76692 -12.70127 -12.52880 -12.46253 -12.24347 -12.14155 -12.08150 -11.97198 -11.60762 -11.58049 -11.25152 -11.15434 -11.08983 -10.71249 -10.48564 -9.92094 -8.94578 -5.09119 -0.09152 -0.02553 0.57000 1.22075 1.60417 1.93519 2.01407 2.22751 2.28779 3.22469 3.36835 3.49552 3.61282 3.64630 3.70783 3.79706 3.89224 3.98933 4.07210 4.15015 4.25094 4.32343 4.33753 4.34509 4.35908 4.37187 4.47347 4.48505 4.50424 4.59544 4.64043 4.72027 4.82602 4.84558 4.97516 5.01525 5.06199 5.09290 5.15231 5.18352 5.25297 5.34553 5.43548 5.97823 6.43350 6.75594 6.85923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.320 6.320 3 C 0.114 3.886 4 C 0.102 3.898 5 O -0.309 6.309 6 C 0.056 3.944 7 C -0.082 4.082 8 H 0.074 0.926 9 C -0.107 4.107 10 C -0.146 4.146 11 C 0.101 3.899 12 H 0.063 0.937 13 O -0.591 6.591 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.148 4.148 17 C -0.081 4.081 18 Br -0.043 7.043 19 C -0.092 4.092 20 C -0.079 4.079 21 O -0.541 6.541 22 Si 0.771 3.229 23 C -0.156 4.156 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.393 0.607 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.393 0.607 41 H -0.281 1.281 42 H -0.289 1.289 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -2.578 -2.751 4.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.234 6.234 3 C 0.067 3.933 4 C 0.055 3.945 5 O -0.223 6.223 6 C -0.019 4.019 7 C -0.100 4.100 8 H 0.092 0.908 9 C -0.145 4.145 10 C -0.184 4.184 11 C 0.042 3.958 12 H 0.081 0.919 13 O -0.399 6.399 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.169 4.169 17 C -0.161 4.161 18 Br 0.042 6.958 19 C -0.095 4.095 20 C -0.188 4.188 21 O -0.349 6.349 22 Si 0.675 3.325 23 C -0.175 4.175 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.122 0.878 40 H 0.243 0.757 41 H -0.208 1.208 42 H -0.216 1.216 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.676 -1.485 -1.318 3.332 hybrid contribution 0.275 0.005 -0.217 0.351 sum -2.401 -1.480 -1.535 3.211 Atomic orbital electron populations 1.23574 0.75935 1.06208 1.03236 1.86212 1.23731 1.25214 1.88235 1.18426 0.89236 0.85919 0.99706 1.18296 0.88780 0.86008 1.01449 1.86176 1.19839 1.27768 1.88543 1.23117 0.77053 0.99121 1.02577 1.21158 0.95362 0.94084 0.99417 0.90781 1.21467 1.00699 0.95321 0.96983 1.22217 0.95644 0.97895 1.02667 1.21918 0.91505 0.84009 0.98321 0.91860 1.86478 1.76437 1.30210 1.46817 1.21470 1.01166 0.95714 0.96744 1.21447 0.92389 0.96450 1.03837 1.21116 1.01286 0.89402 1.05058 1.21437 0.94370 0.91562 1.08712 1.96751 1.78820 1.22635 1.97549 1.20041 0.92400 0.95864 1.01173 1.25307 1.10219 0.93449 0.89868 1.86549 1.87234 1.44937 1.16167 0.94231 0.73120 0.83019 0.82105 1.20991 1.00625 0.89505 1.06331 0.89913 0.86513 0.91235 0.90623 0.90863 0.91792 0.91015 0.90707 0.92193 0.75733 0.91143 0.92098 0.90169 0.89972 0.82632 0.87754 0.75691 1.20774 1.21627 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.32 -0.66 10.28 -79.78 -0.82 -1.48 16 3 C 0.11 0.25 6.70 22.57 0.15 0.40 16 4 C 0.10 0.37 6.70 22.57 0.15 0.52 16 5 O -0.31 -1.21 9.46 -79.59 -0.75 -1.96 16 6 C 0.06 -0.09 4.12 71.98 0.30 0.21 16 7 C -0.08 0.16 2.43 -10.80 -0.03 0.13 16 8 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 9 C -0.11 0.16 5.10 30.60 0.16 0.32 16 10 C -0.15 0.19 5.55 30.60 0.17 0.36 16 11 C 0.10 -0.04 3.47 30.60 0.11 0.06 16 12 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 13 O -0.59 -1.42 13.32 -148.98 -1.98 -3.40 16 14 C -0.11 0.05 5.58 30.61 0.17 0.22 16 15 C -0.10 0.40 5.21 30.61 0.16 0.56 16 16 C -0.15 -0.33 8.77 22.37 0.20 -0.13 16 17 C -0.08 -0.27 6.22 22.31 0.14 -0.13 16 18 Br -0.04 -0.20 31.96 -20.37 -0.65 -0.85 16 19 C -0.09 -0.08 5.26 -19.84 -0.10 -0.19 16 20 C -0.08 -0.02 2.02 71.24 0.14 0.13 16 21 O -0.54 -0.18 12.70 -148.98 -1.89 -2.07 16 22 Si 0.77 -2.40 29.92 68.60 2.05 -0.35 16 23 C -0.16 0.28 7.64 22.35 0.17 0.45 16 24 H 0.08 -0.94 7.65 -2.39 -0.02 -0.95 16 25 H 0.12 -1.10 8.14 -2.38 -0.02 -1.12 16 26 H 0.07 -0.64 7.68 -2.39 -0.02 -0.66 16 27 H 0.08 -0.29 7.66 -2.38 -0.02 -0.30 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.06 0.08 7.82 -2.38 -0.02 0.06 16 30 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.39 -2.14 9.08 -74.06 -0.67 -2.81 16 34 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 37 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.16 -0.13 6.30 -2.91 -0.02 -0.15 16 39 H 0.11 0.33 7.21 -2.39 -0.02 0.31 16 40 H 0.39 -3.18 8.70 -74.06 -0.64 -3.82 16 41 H -0.28 -0.50 7.11 99.48 0.71 0.20 16 42 H -0.29 -1.15 7.11 99.48 0.71 -0.44 16 43 H 0.17 -1.44 3.37 -2.91 -0.01 -1.45 16 Total: 0.00 -17.62 360.97 -1.29 -18.91 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: -0.23 Total: -12.78 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 2.99 Total: 3.99 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -5.45 Total: -8.92 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.05 Total: -0.35 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.65 Total: -0.85 kcal Total: -17.62 -1.29 -18.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_2162984_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.311 kcal (2) G-P(sol) polarization free energy of solvation -17.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds