Wall clock time and date at job start Mon Mar 8 2021 10:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38610 * 120.02387 * 179.97438 * 4 3 2 6 6 C 1.38661 * 119.88855 * 180.02562 * 5 4 3 7 7 O 1.35898 * 120.02492 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00207 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47462 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46774 * 305.00061 * 9 8 7 11 11 C 1.53000 * 109.47017 * 64.99475 * 9 8 7 12 12 C 1.52998 * 109.47131 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47036 * 299.99991 * 12 11 9 14 14 H 1.09000 * 109.47416 * 300.00132 * 13 12 11 15 15 O 1.42900 * 109.47105 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47153 * 60.00023 * 13 12 11 17 17 C 1.52990 * 109.47457 * 184.99827 * 9 8 7 18 18 C 1.38746 * 119.94318 * 0.02562 * 6 5 4 19 19 C 1.50704 * 119.97002 * 179.97438 * 18 6 5 20 20 O 1.42902 * 109.46780 * 75.00641 * 19 18 6 21 21 Si 1.86301 * 109.47284 * 195.00157 * 19 18 6 22 22 C 1.38191 * 120.06007 * 0.02562 * 18 6 5 23 23 C 1.38156 * 120.10512 * 359.67029 * 22 18 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.08005 * 120.05919 * 0.03279 * 5 4 3 30 30 H 1.09004 * 109.46953 * 299.99863 * 8 7 6 31 31 H 1.09000 * 109.47782 * 59.99489 * 8 7 6 32 32 H 1.09001 * 109.47537 * 300.00332 * 11 9 8 33 33 H 1.09001 * 109.47219 * 60.00235 * 11 9 8 34 34 H 1.09002 * 109.46991 * 180.02562 * 12 11 9 35 35 H 1.08993 * 109.47571 * 59.99803 * 12 11 9 36 36 H 0.96701 * 113.99729 * 60.00492 * 15 13 12 37 37 H 1.08993 * 109.47323 * 180.02562 * 16 13 12 38 38 H 1.09000 * 109.46870 * 59.99775 * 16 13 12 39 39 H 1.09000 * 109.47319 * 299.99900 * 17 9 8 40 40 H 1.09001 * 109.47303 * 59.99492 * 17 9 8 41 41 H 1.08993 * 109.47418 * 315.00716 * 19 18 6 42 42 H 0.96698 * 114.00640 * 59.99776 * 20 19 18 43 43 H 1.48498 * 109.99898 * 58.68442 * 21 19 18 44 44 H 1.48494 * 110.00097 * 180.02562 * 21 19 18 45 45 H 1.07997 * 119.95090 * 179.97438 * 22 18 6 46 46 H 1.08002 * 119.97459 * 180.30130 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8839 2.8060 -0.0011 6 6 5.2590 2.9845 -0.0022 7 8 5.7819 4.2388 -0.0033 8 6 4.8564 5.3275 -0.0027 9 6 5.6251 6.6505 -0.0034 10 1 6.3179 6.6685 0.8379 11 6 6.4075 6.7849 -1.3113 12 6 7.1767 8.1075 -1.3118 13 6 6.1909 9.2708 -1.1853 14 1 5.4980 9.2531 -2.0266 15 8 6.9093 10.5061 -1.1852 16 6 5.4085 9.1364 0.1226 17 6 4.6391 7.8134 0.1229 18 6 6.1005 1.8813 -0.0033 19 6 7.5951 2.0746 -0.0050 20 8 8.0242 2.4813 1.2959 21 14 8.4280 0.4716 -0.4607 22 6 5.5693 0.6056 -0.0038 23 6 4.1996 0.4252 0.0037 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.2272 3.6635 -0.0006 30 1 4.2286 5.2712 -0.8920 31 1 4.2305 5.2720 0.8880 32 1 7.1100 5.9564 -1.4014 33 1 5.7147 6.7668 -2.1527 34 1 7.7337 8.2035 -2.2439 35 1 7.8695 8.1253 -0.4706 36 1 7.4294 10.6587 -1.9860 37 1 4.7060 9.9648 0.2126 38 1 6.1014 9.1540 0.9639 39 1 3.9462 7.7953 -0.7184 40 1 4.0816 7.7176 1.0547 41 1 7.8614 2.8419 -0.7318 42 1 7.8197 1.8447 1.9945 43 1 7.9658 0.0215 -1.7983 44 1 9.9023 0.6488 -0.4654 45 1 6.2260 -0.2518 -0.0050 46 1 3.7868 -0.5728 0.0082 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34806_16737256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:17 Heat of formation + Delta-G solvation = -147.390313 kcal Electronic energy + Delta-G solvation = -26226.874957 eV Core-core repulsion = 22469.041252 eV Total energy + Delta-G solvation = -3757.833706 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74875 -40.50962 -39.77899 -38.41393 -37.08808 -36.61304 -33.13590 -32.17799 -31.88061 -31.35439 -30.72314 -26.87331 -26.29390 -24.76606 -23.83944 -23.37104 -22.20083 -21.96945 -20.92021 -19.86365 -18.26950 -18.25038 -17.65906 -17.32164 -17.28029 -16.95208 -16.62842 -16.25753 -15.83182 -15.54062 -15.52876 -15.13906 -14.80267 -14.67897 -14.42754 -14.27766 -14.07402 -13.77562 -13.64821 -13.35328 -13.25290 -13.15446 -13.05863 -12.79325 -12.53598 -12.23311 -12.18289 -12.01482 -11.99984 -11.83690 -11.66735 -11.62429 -11.44828 -11.14144 -10.76762 -10.35379 -9.68307 -9.07960 -5.02014 0.20692 0.32372 1.33066 1.65421 1.97820 1.99889 2.23650 2.58106 3.18187 3.57965 3.60126 3.63431 3.67729 3.75974 3.84357 4.00849 4.02804 4.05613 4.08227 4.09843 4.16185 4.24886 4.30051 4.32128 4.35025 4.38000 4.41358 4.42957 4.46537 4.56799 4.63272 4.76704 4.85872 4.92287 4.92606 5.00624 5.01856 5.04469 5.09539 5.12511 5.18701 5.26295 5.26653 5.29746 5.38012 5.53795 6.24766 6.40635 6.81566 6.84474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.164 3.836 5 C -0.260 4.260 6 C 0.179 3.821 7 O -0.312 6.312 8 C 0.060 3.940 9 C -0.082 4.082 10 H 0.072 0.928 11 C -0.107 4.107 12 C -0.147 4.147 13 C 0.102 3.898 14 H 0.064 0.936 15 O -0.589 6.589 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.205 4.205 19 C -0.060 4.060 20 O -0.556 6.556 21 Si 0.784 3.216 22 C -0.032 4.032 23 C -0.242 4.242 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.393 0.607 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.391 0.609 43 H -0.283 1.283 44 H -0.300 1.300 45 H 0.166 0.834 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -5.308 -0.020 6.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.246 6.246 4 C 0.118 3.882 5 C -0.280 4.280 6 C 0.132 3.868 7 O -0.225 6.225 8 C -0.015 4.015 9 C -0.100 4.100 10 H 0.090 0.910 11 C -0.145 4.145 12 C -0.184 4.184 13 C 0.044 3.956 14 H 0.082 0.918 15 O -0.398 6.398 16 C -0.150 4.150 17 C -0.140 4.140 18 C -0.206 4.206 19 C -0.169 4.169 20 O -0.364 6.364 21 Si 0.689 3.311 22 C -0.049 4.049 23 C -0.260 4.260 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.240 0.760 43 H -0.210 1.210 44 H -0.229 1.229 45 H 0.183 0.817 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.186 -4.922 -0.328 5.873 hybrid contribution -0.051 0.681 -0.793 1.047 sum -3.237 -4.241 -1.121 5.452 Atomic orbital electron populations 1.21826 0.91999 1.04164 1.03018 1.23118 0.96526 0.80383 1.02878 1.86068 1.18768 1.31836 1.87950 1.18854 0.82844 0.93662 0.92828 1.20537 0.93933 0.97081 1.16404 1.18608 0.90530 0.84879 0.92742 1.86139 1.36506 1.12187 1.87663 1.23041 0.91711 0.84467 1.02302 1.21160 0.97724 0.91909 0.99215 0.90961 1.21460 0.99102 0.96812 0.97101 1.22216 0.98618 0.94997 1.02609 1.21900 0.92595 0.82760 0.98390 0.91777 1.86481 1.66812 1.39679 1.46816 1.21467 0.98997 0.97866 0.96703 1.21438 0.97097 0.91677 1.03816 1.19750 0.96151 0.91682 1.12993 1.25026 0.92699 1.10609 0.88613 1.86494 1.82180 1.50757 1.16932 0.94034 0.75771 0.78533 0.82774 1.20876 0.94963 0.95263 0.93838 1.21403 0.93780 0.99035 1.11819 0.88246 0.92008 0.92141 0.90321 0.90633 0.84393 0.91064 0.91085 0.92267 0.91034 0.90745 0.92280 0.75734 0.90895 0.92101 0.90229 0.89937 0.89312 0.75967 1.21020 1.22854 0.81709 0.82441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.70 10.28 71.98 0.74 1.44 16 2 C 0.05 -0.14 5.46 71.98 0.39 0.25 16 3 O -0.33 -1.23 10.14 -92.47 -0.94 -2.17 16 4 C 0.16 0.64 6.68 22.49 0.15 0.79 16 5 C -0.26 -1.37 8.97 22.46 0.20 -1.17 16 6 C 0.18 1.11 6.66 22.49 0.15 1.26 16 7 O -0.31 -2.13 9.00 -92.40 -0.83 -2.97 16 8 C 0.06 0.09 4.12 71.98 0.30 0.39 16 9 C -0.08 -0.07 2.43 -10.80 -0.03 -0.09 16 10 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 11 C -0.11 -0.13 5.10 30.59 0.16 0.03 16 12 C -0.15 -0.14 5.55 30.59 0.17 0.03 16 13 C 0.10 0.12 3.47 30.60 0.11 0.23 16 14 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 15 O -0.59 -2.19 13.32 -148.98 -1.98 -4.18 16 16 C -0.11 -0.14 5.57 30.61 0.17 0.03 16 17 C -0.10 0.18 5.21 30.61 0.16 0.34 16 18 C -0.20 -0.71 5.27 -19.75 -0.10 -0.82 16 19 C -0.06 -0.21 2.37 71.24 0.17 -0.04 16 20 O -0.56 -2.45 12.88 -148.98 -1.92 -4.37 16 21 Si 0.78 -0.64 29.91 68.60 2.05 1.41 16 22 C -0.03 0.03 8.65 22.24 0.19 0.23 16 23 C -0.24 0.09 9.04 22.38 0.20 0.29 16 24 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.06 -0.19 8.14 -2.39 -0.02 -0.20 16 27 H 0.08 -0.46 7.65 -2.39 -0.02 -0.48 16 28 H 0.08 -0.41 7.67 -2.39 -0.02 -0.43 16 29 H 0.14 0.51 6.30 -2.91 -0.02 0.49 16 30 H 0.07 -0.01 7.66 -2.39 -0.02 -0.03 16 31 H 0.07 0.02 7.66 -2.39 -0.02 0.00 16 32 H 0.06 0.25 7.82 -2.39 -0.02 0.24 16 33 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.39 -1.62 9.08 -74.06 -0.67 -2.29 16 37 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.06 0.21 8.14 -2.39 -0.02 0.20 16 39 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.09 0.63 7.82 -2.39 -0.02 0.62 16 42 H 0.39 -1.72 8.70 -74.06 -0.64 -2.37 16 43 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 44 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 45 H 0.17 -1.28 5.12 -2.91 -0.01 -1.30 16 46 H 0.16 -0.91 6.29 -2.91 -0.02 -0.93 16 Total: 0.00 -17.71 363.77 -0.79 -18.50 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: -0.30 Total: -9.43 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 3.13 Total: 3.20 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -5.67 Total: -13.68 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: 2.05 Total: 1.41 kcal Total: -17.71 -0.79 -18.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34806_16737256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.891 kcal (2) G-P(sol) polarization free energy of solvation -17.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds