Wall clock time and date at job start Mon Mar 8 2021 08:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 O 1.42898 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.35896 * 117.00205 * 180.02562 * 4 3 2 6 6 C 1.38612 * 120.02768 * 180.02562 * 5 4 3 7 7 C 1.38658 * 119.88961 * 179.70431 * 6 5 4 8 8 O 1.35896 * 120.02806 * 180.27375 * 7 6 5 9 9 C 1.42902 * 116.99906 * 0.24866 * 8 7 6 10 10 C 1.53002 * 109.47135 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.46745 * 55.00514 * 10 9 8 12 12 C 1.52994 * 109.46957 * 175.00145 * 10 9 8 13 13 C 1.53009 * 109.47037 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47079 * 299.99958 * 13 12 10 15 15 H 1.09004 * 109.47564 * 300.00310 * 14 13 12 16 16 O 1.42895 * 109.47541 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.47278 * 59.99957 * 14 13 12 18 18 C 1.52995 * 109.47339 * 295.00600 * 10 9 8 19 19 C 1.38745 * 119.94292 * 0.52298 * 7 6 5 20 20 C 1.50707 * 119.97168 * 179.74570 * 19 7 6 21 21 O 1.42903 * 109.46442 * 74.73106 * 20 19 7 22 22 Si 1.86293 * 109.47256 * 194.72672 * 20 19 7 23 23 C 1.38200 * 120.05901 * 359.47836 * 19 7 6 24 24 C 1.38154 * 120.10428 * 0.27299 * 23 19 7 25 25 H 1.09000 * 109.47548 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47292 * 299.99912 * 1 2 3 27 27 H 1.09004 * 109.47492 * 59.99468 * 1 2 3 28 28 H 1.09002 * 109.46845 * 240.00304 * 2 1 3 29 29 H 1.08991 * 109.47272 * 120.00207 * 2 1 3 30 30 H 1.08998 * 109.46976 * 59.99894 * 3 2 1 31 31 H 1.09000 * 109.46958 * 300.00346 * 3 2 1 32 32 H 1.08003 * 120.05694 * 0.02562 * 6 5 4 33 33 H 1.08997 * 109.47589 * 300.00377 * 9 8 7 34 34 H 1.09007 * 109.47127 * 60.00238 * 9 8 7 35 35 H 1.08999 * 109.47558 * 300.00177 * 12 10 9 36 36 H 1.09004 * 109.47466 * 60.00460 * 12 10 9 37 37 H 1.08997 * 109.46937 * 60.00202 * 13 12 10 38 38 H 1.09001 * 109.47126 * 180.02562 * 13 12 10 39 39 H 0.96701 * 114.01059 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.46902 * 59.99655 * 17 14 13 41 41 H 1.08996 * 109.47241 * 180.02562 * 17 14 13 42 42 H 1.09004 * 109.46845 * 299.99394 * 18 10 9 43 43 H 1.08992 * 109.47383 * 59.99553 * 18 10 9 44 44 H 1.08999 * 109.47345 * 314.73176 * 20 19 7 45 45 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 46 46 H 1.48501 * 109.99918 * 58.68485 * 22 20 19 47 47 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 48 48 H 1.07994 * 119.94588 * 180.29294 * 23 19 7 49 49 H 1.08003 * 119.96899 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 5.4701 2.7266 -0.0012 7 6 6.0966 3.9636 -0.0069 8 8 7.4535 4.0386 -0.0136 9 6 8.1715 2.8031 -0.0199 10 6 9.6750 3.0870 -0.0275 11 1 9.9272 3.7319 0.8142 12 6 10.4433 1.7693 0.0915 13 6 11.9468 2.0533 0.0845 14 6 12.3282 2.7497 -1.2233 15 1 12.0763 2.1050 -2.0653 16 8 13.7322 3.0155 -1.2296 17 6 11.5598 4.0675 -1.3423 18 6 10.0559 3.7833 -1.3355 19 6 5.3371 5.1246 -0.0006 20 6 6.0174 6.4694 -0.0010 21 8 6.5425 6.7370 -1.3029 22 14 4.7842 7.7894 0.4545 23 6 3.9571 5.0491 0.0005 24 6 3.3306 3.8178 0.0010 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0597 1.8217 -0.0028 33 1 7.9144 2.2288 0.8701 34 1 7.9054 2.2326 -0.9099 35 1 10.1720 1.2733 1.0233 36 1 10.1912 1.1243 -0.7503 37 1 12.1987 2.6980 0.9264 38 1 12.4943 1.1145 0.1688 39 1 14.0454 3.4574 -2.0307 40 1 11.8116 4.7122 -0.5004 41 1 11.8312 4.5634 -2.2742 42 1 9.8038 3.1382 -2.1773 43 1 9.5085 4.7219 -1.4203 44 1 6.8304 6.4655 0.7250 45 1 5.8734 6.7555 -2.0008 46 1 4.2072 7.5051 1.7930 47 1 5.4427 9.1205 0.4570 48 1 3.3677 5.9539 0.0007 49 1 2.2520 3.7613 0.0015 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34807_16737256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:14:27 Heat of formation + Delta-G solvation = -152.890621 kcal Electronic energy + Delta-G solvation = -28004.356358 eV Core-core repulsion = 24090.746522 eV Total energy + Delta-G solvation = -3913.609836 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.75683 -40.52545 -39.79883 -38.42302 -37.12087 -36.62664 -34.84101 -32.21694 -31.99054 -31.83977 -30.72377 -27.73377 -26.81180 -26.06625 -23.95299 -23.72329 -22.87499 -22.11412 -21.85815 -20.91228 -19.82616 -18.29085 -18.24174 -17.60150 -17.40592 -17.29797 -17.04044 -16.55181 -16.42646 -15.95035 -15.53084 -15.47078 -15.15529 -15.08419 -14.80660 -14.73544 -14.47999 -14.14299 -13.85873 -13.74830 -13.54395 -13.34084 -13.23903 -13.12377 -12.84528 -12.72016 -12.44430 -12.33917 -12.21729 -12.14107 -11.94751 -11.84584 -11.78133 -11.62417 -11.61424 -11.42520 -11.12984 -10.75046 -10.35140 -9.68530 -9.08234 -5.02171 0.20479 0.32172 1.33126 1.65502 1.97412 1.98420 2.20831 2.57890 3.18964 3.58929 3.60276 3.64171 3.68263 3.75733 3.83494 3.93477 3.93726 4.01372 4.07157 4.10433 4.13154 4.21982 4.27020 4.30750 4.32520 4.33817 4.41130 4.44071 4.46812 4.54261 4.55213 4.62310 4.64396 4.78081 4.79237 4.93645 5.01450 5.03027 5.05072 5.10779 5.11870 5.14376 5.16319 5.24694 5.27220 5.29654 5.33892 5.39001 5.53922 6.24259 6.40026 6.82515 6.84900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.331 6.331 5 C 0.165 3.835 6 C -0.260 4.260 7 C 0.179 3.821 8 O -0.312 6.312 9 C 0.059 3.941 10 C -0.082 4.082 11 H 0.071 0.929 12 C -0.103 4.103 13 C -0.113 4.113 14 C 0.102 3.898 15 H 0.065 0.935 16 O -0.590 6.590 17 C -0.146 4.146 18 C -0.106 4.106 19 C -0.204 4.204 20 C -0.059 4.059 21 O -0.554 6.554 22 Si 0.783 3.217 23 C -0.032 4.032 24 C -0.242 4.242 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.393 0.607 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.391 0.609 46 H -0.285 1.285 47 H -0.300 1.300 48 H 0.166 0.834 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -1.630 -2.855 7.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.244 6.244 5 C 0.119 3.881 6 C -0.279 4.279 7 C 0.133 3.867 8 O -0.225 6.225 9 C -0.015 4.015 10 C -0.100 4.100 11 H 0.089 0.911 12 C -0.140 4.140 13 C -0.150 4.150 14 C 0.044 3.956 15 H 0.082 0.918 16 O -0.399 6.399 17 C -0.184 4.184 18 C -0.143 4.143 19 C -0.205 4.205 20 C -0.169 4.169 21 O -0.362 6.362 22 Si 0.689 3.311 23 C -0.049 4.049 24 C -0.261 4.261 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.243 0.757 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.240 0.760 46 H -0.212 1.212 47 H -0.228 1.228 48 H 0.183 0.817 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.754 -1.323 -1.390 6.065 hybrid contribution 0.643 -0.282 -0.157 0.720 sum -5.110 -1.605 -1.547 5.575 Atomic orbital electron populations 1.21687 0.92969 1.03074 1.02839 1.21500 0.97043 0.94258 1.03290 1.23170 0.76520 0.99746 1.02839 1.86040 1.23347 1.27081 1.87968 1.18844 0.91527 0.84895 0.92879 1.20531 0.93340 0.97647 1.16377 1.18600 0.82691 0.92702 0.92716 1.86142 1.14917 1.33740 1.87651 1.23046 0.91642 0.84548 1.02308 1.21164 0.91346 0.98238 0.99279 0.91059 1.21434 0.93068 0.95747 1.03800 1.21459 0.95963 1.00891 0.96717 1.21900 0.80186 0.95181 0.98358 0.91753 1.86473 1.23777 1.82643 1.46959 1.22223 0.95641 0.97954 1.02578 1.21449 0.95027 1.00915 0.96938 1.19752 0.93656 0.94168 1.12949 1.25004 1.04345 0.98855 0.88650 1.86491 1.39239 1.93652 1.16818 0.94072 0.80789 0.73518 0.82747 1.20872 0.91894 0.98314 0.93835 1.21394 1.01531 0.91279 1.11862 0.91452 0.91822 0.91640 0.91237 0.91436 0.90730 0.90369 0.84367 0.91179 0.90958 0.90009 0.90185 0.92154 0.90916 0.75711 0.92381 0.90747 0.91094 0.92057 0.89367 0.75982 1.21166 1.22841 0.81724 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.86 9.91 71.98 0.71 1.57 16 2 C -0.12 0.39 6.30 30.59 0.19 0.58 16 3 C 0.05 -0.13 4.74 71.98 0.34 0.21 16 4 O -0.33 -1.26 10.13 -92.38 -0.94 -2.20 16 5 C 0.16 0.65 6.68 22.49 0.15 0.80 16 6 C -0.26 -1.34 8.97 22.46 0.20 -1.14 16 7 C 0.18 1.09 6.66 22.49 0.15 1.24 16 8 O -0.31 -2.09 9.00 -92.39 -0.83 -2.92 16 9 C 0.06 0.09 4.12 71.98 0.30 0.39 16 10 C -0.08 -0.06 2.43 -10.80 -0.03 -0.09 16 11 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 12 C -0.10 0.18 5.20 30.60 0.16 0.34 16 13 C -0.11 -0.14 5.57 30.59 0.17 0.03 16 14 C 0.10 0.13 3.47 30.59 0.11 0.24 16 15 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 16 O -0.59 -2.25 13.32 -148.98 -1.98 -4.23 16 17 C -0.15 -0.17 5.55 30.61 0.17 0.00 16 18 C -0.11 -0.15 5.10 30.61 0.16 0.00 16 19 C -0.20 -0.69 5.27 -19.75 -0.10 -0.80 16 20 C -0.06 -0.20 2.37 71.24 0.17 -0.03 16 21 O -0.55 -2.10 12.88 -148.98 -1.92 -4.02 16 22 Si 0.78 -0.61 29.91 68.60 2.05 1.44 16 23 C -0.03 0.03 8.65 22.24 0.19 0.23 16 24 C -0.24 0.06 9.04 22.38 0.20 0.26 16 25 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.06 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.07 -0.34 7.66 -2.39 -0.02 -0.35 16 31 H 0.08 -0.40 7.66 -2.39 -0.02 -0.41 16 32 H 0.14 0.50 6.30 -2.91 -0.02 0.48 16 33 H 0.07 0.01 7.65 -2.39 -0.02 -0.01 16 34 H 0.07 0.00 7.67 -2.38 -0.02 -0.02 16 35 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.39 -1.59 9.08 -74.06 -0.67 -2.26 16 40 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.06 0.33 7.82 -2.39 -0.02 0.31 16 44 H 0.09 0.64 7.83 -2.39 -0.02 0.62 16 45 H 0.39 -1.94 8.70 -74.06 -0.64 -2.59 16 46 H -0.28 -1.09 7.11 99.48 0.71 -0.38 16 47 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 48 H 0.17 -1.27 5.12 -2.91 -0.01 -1.29 16 49 H 0.16 -0.86 6.29 -2.91 -0.02 -0.88 16 Total: 0.00 -17.13 385.28 -0.71 -17.84 By element: Atomic # 1 Polarization: -9.41 SS G_CDS: -0.34 Total: -9.75 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 3.24 Total: 3.84 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -5.67 Total: -13.37 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.05 Total: 1.44 kcal Total: -17.13 -0.71 -17.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34807_16737256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.049 kcal (2) G-P(sol) polarization free energy of solvation -17.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds