Wall clock time and date at job start Mon Mar 8 2021 09:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47187 * 239.99739 * 2 1 3 5 5 Si 1.86303 * 109.46835 * 119.99842 * 2 1 3 6 6 C 1.86296 * 109.47254 * 300.00040 * 5 2 1 7 7 C 1.86307 * 109.47054 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47163 * 60.00460 * 5 2 1 9 9 C 1.42904 * 114.00367 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47396 * 179.97438 * 9 8 5 11 11 O 1.42898 * 109.47319 * 64.99884 * 10 9 8 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38710 * 120.05544 * 359.72769 * 12 11 10 14 14 C 1.38159 * 119.94311 * 179.72143 * 13 12 11 15 15 C 1.38250 * 120.05742 * 0.57011 * 14 13 12 16 16 C 1.38280 * 120.10833 * 359.68104 * 15 14 13 17 17 C 1.50697 * 119.97205 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47393 * 245.02079 * 17 16 15 19 19 Si 1.86306 * 109.47148 * 5.02162 * 17 16 15 20 20 H 1.48504 * 109.46673 * 59.99962 * 19 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46932 * 300.00295 * 19 17 16 23 23 C 1.38129 * 120.05716 * 0.04353 * 16 15 14 24 24 H 1.08996 * 109.46870 * 299.99665 * 1 2 3 25 25 H 1.08993 * 109.46791 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46839 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47287 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46994 * 300.00152 * 3 2 1 29 29 H 1.09007 * 109.47013 * 59.99880 * 3 2 1 30 30 H 1.09005 * 109.47010 * 300.00203 * 4 2 1 31 31 H 1.08997 * 109.46816 * 59.99977 * 4 2 1 32 32 H 1.08998 * 109.46773 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47027 * 180.02562 * 6 5 2 34 34 H 1.08999 * 109.47231 * 299.99802 * 6 5 2 35 35 H 1.08999 * 109.47068 * 60.00516 * 6 5 2 36 36 H 1.09004 * 109.46640 * 300.00311 * 7 5 2 37 37 H 1.09002 * 109.46672 * 59.99803 * 7 5 2 38 38 H 1.08993 * 109.47010 * 180.02562 * 7 5 2 39 39 H 1.09001 * 109.46993 * 59.99081 * 9 8 5 40 40 H 1.09004 * 109.46505 * 299.99857 * 9 8 5 41 41 H 1.09002 * 109.47153 * 304.99576 * 10 9 8 42 42 H 1.09001 * 109.46832 * 184.99767 * 10 9 8 43 43 H 1.08006 * 120.02494 * 359.97438 * 13 12 11 44 44 H 1.08006 * 119.97038 * 180.27439 * 14 13 12 45 45 H 1.08000 * 119.94133 * 179.70045 * 15 14 13 46 46 H 1.09005 * 109.47122 * 125.02014 * 17 16 15 47 47 H 0.96696 * 113.99487 * 59.99932 * 18 17 16 48 48 H 1.07998 * 120.02418 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0141 -0.8789 1.5209 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1814 2.6521 10 6 1.4627 -4.5991 2.5477 11 8 2.0311 -5.2565 1.4134 12 6 1.6317 -6.5337 1.1761 13 6 0.7160 -7.1434 2.0209 14 6 0.3072 -8.4399 1.7743 15 6 0.8189 -9.1335 0.6934 16 6 1.7358 -8.5296 -0.1473 17 6 2.2911 -9.2883 -1.3250 18 8 3.6939 -9.4909 -1.1426 19 14 1.4376 -10.9390 -1.4587 20 1 -0.0202 -10.7284 -1.6483 21 1 1.9843 -11.6863 -2.6196 22 1 1.6677 -11.7173 -0.2153 23 6 2.1434 -7.2317 0.0917 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 1.8937 -0.5136 3.9323 34 1 1.8933 1.0277 3.0423 35 1 0.4400 0.0000 3.0423 36 1 4.3770 -1.3930 0.6308 37 1 4.3777 0.1486 1.5206 38 1 4.3773 -1.3931 2.4106 39 1 1.6637 -2.7112 3.5653 40 1 3.1174 -3.2252 2.6760 41 1 0.3797 -4.5506 2.4346 42 1 1.7091 -5.1560 3.4517 43 1 0.3199 -6.6037 2.8685 44 1 -0.4091 -8.9136 2.4293 45 1 0.5017 -10.1486 0.5051 46 1 2.1222 -8.7169 -2.2377 47 1 3.9186 -9.9935 -0.3477 48 1 2.8593 -6.7604 -0.5655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:06 Heat of formation + Delta-G solvation = -149.493881 kcal Electronic energy + Delta-G solvation = -24250.304307 eV Core-core repulsion = 20814.618614 eV Total energy + Delta-G solvation = -3435.685694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19740 -39.27798 -37.87317 -37.06342 -36.83258 -32.42390 -31.87302 -30.11108 -29.36968 -29.10456 -27.86410 -27.38753 -26.85208 -24.19581 -23.60589 -21.88048 -20.41801 -19.21072 -18.16201 -17.94744 -17.35699 -16.94859 -16.55126 -16.07438 -16.05508 -15.74486 -15.62169 -15.13046 -14.92268 -14.86271 -14.71684 -14.43415 -14.10698 -13.95629 -13.60036 -13.48469 -13.40579 -13.26647 -13.05062 -12.95344 -12.92081 -12.89386 -12.43724 -12.39759 -12.18878 -12.02390 -11.94101 -11.81226 -11.69922 -11.57059 -11.48973 -11.30929 -10.43737 -10.39530 -10.07990 -9.86367 -9.14832 0.27541 0.48271 1.16261 1.40898 1.45581 1.54729 1.71790 1.92160 2.03150 2.21445 2.40701 2.74430 3.49764 3.68959 3.75317 3.94710 3.97595 4.03190 4.11532 4.12197 4.14468 4.22548 4.25942 4.38470 4.47495 4.55209 4.61385 4.63075 4.67559 4.70896 4.73303 4.74855 4.80716 4.86283 5.00143 5.04033 5.10681 5.11453 5.17007 5.31075 5.33395 5.34655 5.41654 5.43152 5.49293 5.50238 5.51380 5.59106 5.76152 6.48837 6.56977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.087 3.913 10 C 0.057 3.943 11 O -0.302 6.302 12 C 0.134 3.866 13 C -0.207 4.207 14 C -0.073 4.073 15 C -0.167 4.167 16 C -0.081 4.081 17 C -0.082 4.082 18 O -0.537 6.537 19 Si 0.956 3.044 20 H -0.250 1.250 21 H -0.255 1.255 22 H -0.252 1.252 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.376 0.624 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 0.032 3.303 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.011 3.989 10 C -0.019 4.019 11 O -0.215 6.215 12 C 0.088 3.912 13 C -0.226 4.226 14 C -0.091 4.091 15 C -0.185 4.185 16 C -0.082 4.082 17 C -0.193 4.193 18 O -0.342 6.342 19 Si 0.778 3.222 20 H -0.174 1.174 21 H -0.179 1.179 22 H -0.176 1.176 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.224 0.776 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.382 -0.486 2.430 2.838 hybrid contribution 0.164 0.680 0.953 1.182 sum -1.218 0.195 3.383 3.601 Atomic orbital electron populations 1.21510 0.93861 1.01979 1.01748 1.25772 1.00634 1.02585 1.12767 1.21556 1.00791 0.94919 1.02112 1.21509 1.00637 1.00321 0.96655 0.76738 0.63122 0.53352 0.65022 1.27047 1.07004 1.09607 1.17704 1.27027 1.24995 1.04657 1.04579 1.85408 1.79101 1.45994 1.47270 1.22084 0.99367 0.89780 0.87679 1.23010 0.99136 0.91902 0.87814 1.86154 1.64702 1.23551 1.47131 1.19055 0.93695 0.84066 0.94379 1.21315 1.02001 0.97275 1.01975 1.20880 0.98114 0.93606 0.96482 1.20949 1.00150 1.00321 0.97053 1.20091 0.96864 0.94356 0.96858 1.25038 0.86947 1.08790 0.98494 1.86530 1.20667 1.78236 1.48739 0.85601 0.79595 0.75862 0.81099 1.17390 1.17905 1.17589 1.20258 1.02590 0.93702 0.97650 0.92748 0.92798 0.92188 0.92507 0.92500 0.92561 0.92057 0.92835 0.92687 0.91521 0.90630 0.90855 0.90736 0.90764 0.91523 0.90456 0.91405 0.90730 0.90682 0.85269 0.85391 0.86108 0.86274 0.77645 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.04 7.85 37.16 0.29 0.26 16 2 C -0.37 0.00 0.53 -90.62 -0.05 -0.04 16 3 C -0.14 0.06 7.85 37.15 0.29 0.35 16 4 C -0.13 -0.09 7.85 37.16 0.29 0.20 16 5 Si 1.29 -1.27 8.45 -169.99 -1.44 -2.70 16 6 C -0.51 0.58 8.50 101.05 0.86 1.44 16 7 C -0.51 0.22 8.50 101.05 0.86 1.08 16 8 O -0.62 -0.33 8.52 -40.08 -0.34 -0.67 16 9 C 0.09 -0.10 5.51 37.16 0.20 0.10 16 10 C 0.06 -0.04 5.12 37.16 0.19 0.15 16 11 O -0.30 -0.73 10.10 -24.27 -0.25 -0.98 16 12 C 0.13 0.31 6.69 -39.22 -0.26 0.04 16 13 C -0.21 -0.16 9.04 -39.44 -0.36 -0.52 16 14 C -0.07 -0.03 10.04 -39.61 -0.40 -0.43 16 15 C -0.17 -0.13 8.67 -39.56 -0.34 -0.47 16 16 C -0.08 -0.10 5.35 -104.65 -0.56 -0.66 16 17 C -0.08 -0.01 2.80 36.00 0.10 0.09 16 18 O -0.54 -0.44 12.83 -35.23 -0.45 -0.89 16 19 Si 0.96 -0.33 25.14 -169.99 -4.27 -4.60 16 20 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 21 H -0.25 -0.28 7.11 56.52 0.40 0.13 16 22 H -0.25 0.08 7.04 56.52 0.40 0.48 16 23 C -0.12 -0.29 9.62 -39.43 -0.38 -0.67 16 24 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 25 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.06 0.04 7.97 -51.93 -0.41 -0.38 16 27 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 28 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 30 H 0.06 0.08 7.97 -51.93 -0.41 -0.33 16 31 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.05 0.01 7.79 -51.93 -0.40 -0.39 16 33 H 0.07 -0.12 7.48 -51.93 -0.39 -0.50 16 34 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 35 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 36 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 38 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 39 H 0.08 -0.29 7.21 -51.93 -0.37 -0.66 16 40 H 0.07 -0.13 7.21 -51.93 -0.37 -0.50 16 41 H 0.07 -0.08 7.68 -51.93 -0.40 -0.48 16 42 H 0.08 -0.21 7.65 -51.93 -0.40 -0.61 16 43 H 0.13 -0.17 6.30 -52.48 -0.33 -0.50 16 44 H 0.13 -0.22 8.06 -52.48 -0.42 -0.65 16 45 H 0.12 -0.06 4.86 -52.49 -0.26 -0.32 16 46 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 47 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 48 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 381.52 15.07 5.75 5.75 Total: 0.00 -5.35 381.52 -8.16 -13.51 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -7.90 Total: -10.33 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 0.74 Total: 0.91 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -1.04 Total: -2.54 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -5.71 Total: -7.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -5.35 -8.16 -13.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.988 kcal (2) G-P(sol) polarization free energy of solvation -5.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds