Wall clock time and date at job start Mon Mar 8 2021 09:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47187 * 239.99739 * 2 1 3 5 5 Si 1.86303 * 109.46835 * 119.99842 * 2 1 3 6 6 C 1.86296 * 109.47254 * 300.00040 * 5 2 1 7 7 C 1.86307 * 109.47054 * 179.97438 * 5 2 1 8 8 O 1.63097 * 109.47163 * 60.00460 * 5 2 1 9 9 C 1.42904 * 114.00367 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47396 * 179.97438 * 9 8 5 11 11 O 1.42898 * 109.47319 * 64.99884 * 10 9 8 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38710 * 120.05544 * 359.72769 * 12 11 10 14 14 C 1.38159 * 119.94311 * 179.72143 * 13 12 11 15 15 C 1.38250 * 120.05742 * 0.57011 * 14 13 12 16 16 C 1.38280 * 120.10833 * 359.68104 * 15 14 13 17 17 C 1.50697 * 119.97205 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47393 * 245.02079 * 17 16 15 19 19 Si 1.86306 * 109.47148 * 5.02162 * 17 16 15 20 20 H 1.48504 * 109.46673 * 59.99962 * 19 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46932 * 300.00295 * 19 17 16 23 23 C 1.38129 * 120.05716 * 0.04353 * 16 15 14 24 24 H 1.08996 * 109.46870 * 299.99665 * 1 2 3 25 25 H 1.08993 * 109.46791 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46839 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47287 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46994 * 300.00152 * 3 2 1 29 29 H 1.09007 * 109.47013 * 59.99880 * 3 2 1 30 30 H 1.09005 * 109.47010 * 300.00203 * 4 2 1 31 31 H 1.08997 * 109.46816 * 59.99977 * 4 2 1 32 32 H 1.08998 * 109.46773 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47027 * 180.02562 * 6 5 2 34 34 H 1.08999 * 109.47231 * 299.99802 * 6 5 2 35 35 H 1.08999 * 109.47068 * 60.00516 * 6 5 2 36 36 H 1.09004 * 109.46640 * 300.00311 * 7 5 2 37 37 H 1.09002 * 109.46672 * 59.99803 * 7 5 2 38 38 H 1.08993 * 109.47010 * 180.02562 * 7 5 2 39 39 H 1.09001 * 109.46993 * 59.99081 * 9 8 5 40 40 H 1.09004 * 109.46505 * 299.99857 * 9 8 5 41 41 H 1.09002 * 109.47153 * 304.99576 * 10 9 8 42 42 H 1.09001 * 109.46832 * 184.99767 * 10 9 8 43 43 H 1.08006 * 120.02494 * 359.97438 * 13 12 11 44 44 H 1.08006 * 119.97038 * 180.27439 * 14 13 12 45 45 H 1.08000 * 119.94133 * 179.70045 * 15 14 13 46 46 H 1.09005 * 109.47122 * 125.02014 * 17 16 15 47 47 H 0.96696 * 113.99487 * 59.99932 * 18 17 16 48 48 H 1.07998 * 120.02418 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0141 -0.8789 1.5209 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1814 2.6521 10 6 1.4627 -4.5991 2.5477 11 8 2.0311 -5.2565 1.4134 12 6 1.6317 -6.5337 1.1761 13 6 0.7160 -7.1434 2.0209 14 6 0.3072 -8.4399 1.7743 15 6 0.8189 -9.1335 0.6934 16 6 1.7358 -8.5296 -0.1473 17 6 2.2911 -9.2883 -1.3250 18 8 3.6939 -9.4909 -1.1426 19 14 1.4376 -10.9390 -1.4587 20 1 -0.0202 -10.7284 -1.6483 21 1 1.9843 -11.6863 -2.6196 22 1 1.6677 -11.7173 -0.2153 23 6 2.1434 -7.2317 0.0917 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 1.8937 -0.5136 3.9323 34 1 1.8933 1.0277 3.0423 35 1 0.4400 0.0000 3.0423 36 1 4.3770 -1.3930 0.6308 37 1 4.3777 0.1486 1.5206 38 1 4.3773 -1.3931 2.4106 39 1 1.6637 -2.7112 3.5653 40 1 3.1174 -3.2252 2.6760 41 1 0.3797 -4.5506 2.4346 42 1 1.7091 -5.1560 3.4517 43 1 0.3199 -6.6037 2.8685 44 1 -0.4091 -8.9136 2.4293 45 1 0.5017 -10.1486 0.5051 46 1 2.1222 -8.7169 -2.2377 47 1 3.9186 -9.9935 -0.3477 48 1 2.8593 -6.7604 -0.5655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:05 Heat of formation + Delta-G solvation = -142.056673 kcal Electronic energy + Delta-G solvation = -24249.981806 eV Core-core repulsion = 20814.618614 eV Total energy + Delta-G solvation = -3435.363192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22658 -39.28208 -37.83350 -37.08185 -36.83372 -32.45175 -31.85627 -30.08258 -29.29720 -29.06683 -27.84460 -27.38955 -26.86739 -24.12150 -23.64762 -21.87785 -20.41882 -19.22569 -18.10608 -17.94532 -17.36644 -16.96943 -16.53157 -16.06143 -16.04790 -15.71742 -15.59647 -15.12370 -14.93040 -14.85670 -14.74269 -14.42246 -14.10203 -13.93125 -13.53771 -13.43845 -13.34991 -13.17907 -13.02456 -12.96907 -12.93683 -12.86961 -12.43734 -12.40438 -12.16791 -11.98913 -11.94500 -11.77714 -11.70165 -11.54445 -11.48249 -11.24330 -10.44929 -10.31662 -10.05864 -9.90922 -9.20771 0.23132 0.42076 1.17242 1.47904 1.52612 1.55180 1.78173 1.91411 2.13616 2.25016 2.47828 2.69665 3.53720 3.70408 3.82203 3.99020 4.08804 4.10038 4.11434 4.13115 4.22332 4.31747 4.37484 4.42690 4.46486 4.58132 4.63352 4.73568 4.75679 4.78981 4.79205 4.80034 4.81283 4.82546 4.98737 5.00894 5.08030 5.08248 5.19113 5.28867 5.33009 5.38845 5.39547 5.42488 5.45308 5.49043 5.59221 5.64701 5.75796 6.47063 6.69795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.315 2.685 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.639 6.639 9 C 0.075 3.925 10 C 0.047 3.953 11 O -0.324 6.324 12 C 0.119 3.881 13 C -0.210 4.210 14 C -0.075 4.075 15 C -0.176 4.176 16 C -0.084 4.084 17 C -0.087 4.087 18 O -0.553 6.553 19 Si 0.994 3.006 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.247 1.247 23 C -0.146 4.146 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.134 0.866 46 H 0.120 0.880 47 H 0.389 0.611 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -0.143 4.948 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.445 2.555 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.599 6.599 9 C -0.001 4.001 10 C -0.027 4.027 11 O -0.238 6.238 12 C 0.074 3.926 13 C -0.229 4.229 14 C -0.093 4.093 15 C -0.194 4.194 16 C -0.085 4.085 17 C -0.196 4.196 18 O -0.360 6.360 19 Si 0.818 3.182 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.170 1.170 23 C -0.165 4.165 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.168 0.832 44 H 0.170 0.830 45 H 0.152 0.848 46 H 0.137 0.863 47 H 0.238 0.762 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.900 -0.653 4.077 4.545 hybrid contribution 0.342 0.745 0.423 0.922 sum -1.558 0.092 4.500 4.763 Atomic orbital electron populations 1.21529 0.94193 1.01617 1.01945 1.25950 1.00461 1.03082 1.13157 1.21597 1.01201 0.94611 1.02305 1.21525 1.00866 0.99823 0.97123 0.76219 0.62214 0.52734 0.64339 1.27024 1.07003 1.09825 1.17706 1.27137 1.25774 1.04836 1.04325 1.85402 1.79411 1.46764 1.48310 1.22376 0.99843 0.89587 0.88249 1.23289 0.99314 0.92321 0.87795 1.86128 1.65356 1.23766 1.48550 1.19246 0.94317 0.84283 0.94784 1.21571 1.01451 0.97601 1.02238 1.21234 0.98086 0.93471 0.96497 1.21183 1.00013 1.01023 0.97143 1.20214 0.96970 0.94024 0.97242 1.25183 0.86755 1.09447 0.98256 1.86492 1.21124 1.78676 1.49712 0.85049 0.78473 0.74530 0.80148 1.18093 1.20220 1.17044 1.20339 1.03326 0.94535 0.98256 0.91714 0.93453 0.92809 0.91957 0.93212 0.91504 0.93036 0.93349 0.92356 0.90520 0.90317 0.90864 0.91817 0.90375 0.90966 0.87613 0.91055 0.90466 0.88473 0.83250 0.82978 0.84811 0.86253 0.76185 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.17 7.85 71.98 0.56 0.40 16 2 C -0.38 -0.25 0.53 -10.79 -0.01 -0.25 16 3 C -0.14 0.09 7.85 71.98 0.56 0.65 16 4 C -0.14 -0.40 7.85 71.98 0.56 0.17 16 5 Si 1.31 -2.64 8.45 68.60 0.58 -2.06 16 6 C -0.51 1.78 8.50 113.37 0.96 2.74 16 7 C -0.52 0.36 8.50 113.37 0.96 1.32 16 8 O -0.64 -0.85 8.52 -144.35 -1.23 -2.08 16 9 C 0.07 -0.21 5.51 71.98 0.40 0.18 16 10 C 0.05 -0.07 5.12 71.98 0.37 0.29 16 11 O -0.32 -1.90 10.10 -87.80 -0.89 -2.79 16 12 C 0.12 0.65 6.69 22.50 0.15 0.81 16 13 C -0.21 -0.24 9.04 22.36 0.20 -0.04 16 14 C -0.08 0.01 10.04 22.25 0.22 0.23 16 15 C -0.18 -0.22 8.67 22.28 0.19 -0.03 16 16 C -0.08 -0.28 5.35 -19.88 -0.11 -0.38 16 17 C -0.09 -0.10 2.80 71.23 0.20 0.10 16 18 O -0.55 -1.42 12.83 -148.98 -1.91 -3.34 16 19 Si 0.99 -0.65 25.14 68.60 1.72 1.07 16 20 H -0.26 -0.08 7.11 99.48 0.71 0.62 16 21 H -0.28 -0.78 7.11 99.48 0.71 -0.08 16 22 H -0.25 0.40 7.04 99.48 0.70 1.10 16 23 C -0.15 -0.92 9.62 22.37 0.22 -0.71 16 24 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 25 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.05 0.13 7.97 -2.39 -0.02 0.11 16 27 H 0.06 -0.12 7.79 -2.39 -0.02 -0.13 16 28 H 0.05 0.03 8.14 -2.39 -0.02 0.02 16 29 H 0.07 -0.19 7.79 -2.38 -0.02 -0.20 16 30 H 0.05 0.24 7.97 -2.38 -0.02 0.22 16 31 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 33 H 0.08 -0.41 7.48 -2.38 -0.02 -0.42 16 34 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 35 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 36 H 0.06 0.10 7.79 -2.38 -0.02 0.08 16 37 H 0.08 -0.13 7.79 -2.39 -0.02 -0.15 16 38 H 0.07 -0.14 7.48 -2.39 -0.02 -0.16 16 39 H 0.11 -0.96 7.21 -2.39 -0.02 -0.97 16 40 H 0.07 -0.28 7.21 -2.39 -0.02 -0.30 16 41 H 0.08 -0.19 7.68 -2.39 -0.02 -0.21 16 42 H 0.10 -0.64 7.65 -2.39 -0.02 -0.66 16 43 H 0.15 -0.57 6.30 -2.91 -0.02 -0.59 16 44 H 0.15 -0.83 8.06 -2.91 -0.02 -0.86 16 45 H 0.13 -0.27 4.86 -2.91 -0.01 -0.28 16 46 H 0.12 0.04 7.96 -2.38 -0.02 0.02 16 47 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 48 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 Total: 0.00 -13.04 381.52 4.75 -8.28 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: 1.02 Total: -4.57 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.46 Total: 5.48 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -4.03 Total: -8.21 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.30 Total: -0.99 kcal Total: -13.04 4.75 -8.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.772 kcal (2) G-P(sol) polarization free energy of solvation -13.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds