Wall clock time and date at job start Mon Mar 8 2021 09:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.38248 * 119.97185 * 119.99938 * 4 2 1 6 6 C 1.38280 * 120.10973 * 180.02562 * 5 4 2 7 7 C 1.38128 * 120.06015 * 0.02562 * 6 5 4 8 8 C 1.38752 * 119.94154 * 359.97438 * 7 6 5 9 9 O 1.35894 * 120.05867 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99516 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.08997 * 112.85450 * 314.66505 * 11 10 9 13 13 C 1.53786 * 113.61288 * 85.86101 * 11 10 9 14 14 C 1.53959 * 87.01718 * 139.94989 * 13 11 10 15 15 H 1.09001 * 113.60960 * 89.20059 * 14 13 11 16 16 O 1.42905 * 113.66732 * 220.06783 * 14 13 11 17 17 C 1.53779 * 87.11467 * 334.63882 * 14 13 11 18 18 C 1.38163 * 119.97302 * 299.72744 * 4 2 1 19 19 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 20 20 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 21 21 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 22 22 H 1.48509 * 109.99497 * 61.32113 * 3 2 1 23 23 H 1.07998 * 119.94204 * 359.97438 * 5 4 2 24 24 H 1.08008 * 119.97092 * 179.97438 * 6 5 4 25 25 H 1.07991 * 120.03161 * 179.97438 * 7 6 5 26 26 H 1.08994 * 109.47474 * 299.99329 * 10 9 8 27 27 H 1.08993 * 109.47270 * 59.99930 * 10 9 8 28 28 H 1.08994 * 113.61822 * 254.53037 * 13 11 10 29 29 H 1.09005 * 113.61073 * 25.43570 * 13 11 10 30 30 H 0.96705 * 113.99955 * 277.56507 * 16 14 13 31 31 H 1.09000 * 113.61294 * 270.81405 * 17 14 13 32 32 H 1.08996 * 113.68994 * 139.91800 * 17 14 13 33 33 H 1.08005 * 120.02914 * 0.02562 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7260 -0.0379 -2.1401 6 6 3.1881 -0.6868 -3.2704 7 6 2.8560 -2.0089 -3.4937 8 6 2.0585 -2.6860 -2.5822 9 8 1.7308 -3.9869 -2.7992 10 6 2.2427 -4.5954 -3.9865 11 6 1.7723 -6.0496 -4.0578 12 1 1.8803 -6.5765 -3.1098 13 6 0.3856 -6.2176 -4.7013 14 6 0.9507 -7.4670 -5.4013 15 1 0.8333 -8.3827 -4.8218 16 8 0.5206 -7.6090 -6.7567 17 6 2.3397 -6.8225 -5.2602 18 6 1.6018 -2.0348 -1.4458 19 1 -0.3934 0.4417 0.7651 20 1 1.7923 -0.5139 0.8900 21 1 1.5616 2.4679 -1.2084 22 1 1.5879 2.4585 1.2244 23 1 2.9858 0.9961 -1.9680 24 1 3.8085 -0.1592 -3.9798 25 1 3.2168 -2.5151 -4.3767 26 1 1.8792 -4.0525 -4.8589 27 1 3.3321 -4.5669 -3.9687 28 1 -0.4049 -6.4378 -3.9839 29 1 0.1229 -5.4133 -5.3885 30 1 -0.3525 -8.0138 -6.8519 31 1 2.6122 -6.1839 -6.1004 32 1 3.1254 -7.5293 -4.9934 33 1 0.9842 -2.5609 -0.7329 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_11354860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:27 Heat of formation + Delta-G solvation = -64.515619 kcal Electronic energy + Delta-G solvation = -16353.640188 eV Core-core repulsion = 13540.232866 eV Total energy + Delta-G solvation = -2813.407321 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.31724 -40.30143 -38.82893 -37.37406 -36.03068 -32.53528 -31.48100 -29.09520 -26.81920 -26.78203 -23.81869 -23.55312 -21.79276 -20.65697 -18.82615 -18.58243 -18.50686 -17.25687 -17.06370 -16.93575 -16.31313 -15.84100 -15.71169 -15.22033 -14.61263 -14.50056 -14.06301 -13.87055 -13.55027 -13.52260 -13.22676 -12.77448 -12.57367 -12.42211 -12.16750 -11.94807 -11.75147 -11.61186 -11.28362 -10.80775 -10.54477 -9.82072 -9.15170 -4.95351 0.28348 0.49621 1.27309 1.60472 1.95604 2.14716 2.70140 3.18172 3.33677 3.40207 3.48656 3.70597 3.81285 3.83609 3.88951 4.08774 4.15329 4.18983 4.27678 4.30448 4.34789 4.53923 4.61961 4.69705 4.69996 4.71007 4.90676 5.03036 5.06792 5.28848 5.33545 5.44523 5.53813 5.75546 6.43647 6.47176 6.65055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.686 3.314 4 C -0.035 4.035 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.132 3.868 9 O -0.312 6.312 10 C 0.071 3.929 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.164 4.164 14 C 0.076 3.924 15 H 0.085 0.915 16 O -0.560 6.560 17 C -0.120 4.120 18 C -0.126 4.126 19 H 0.380 0.620 20 H 0.079 0.921 21 H -0.255 1.255 22 H -0.261 1.261 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.381 0.619 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -0.772 0.996 2.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.187 4.187 3 Si 0.587 3.413 4 C -0.035 4.035 5 C -0.172 4.172 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.086 3.914 9 O -0.226 6.226 10 C -0.004 4.004 11 C -0.128 4.128 12 H 0.124 0.876 13 C -0.201 4.201 14 C 0.017 3.983 15 H 0.103 0.897 16 O -0.366 6.366 17 C -0.157 4.157 18 C -0.144 4.144 19 H 0.228 0.772 20 H 0.096 0.904 21 H -0.179 1.179 22 H -0.186 1.186 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.690 -0.111 0.433 2.727 hybrid contribution -1.551 -0.383 0.493 1.672 sum 1.139 -0.494 0.926 1.549 Atomic orbital electron populations 1.86598 1.17653 1.80212 1.49761 1.24848 0.84609 1.11127 0.98158 0.94975 0.91727 0.74315 0.80251 1.19018 0.96570 0.92996 0.94902 1.20846 1.01203 0.99829 0.95275 1.20886 0.97941 0.93693 0.96542 1.21318 1.03515 0.96538 1.01069 1.18990 0.94448 0.83575 0.94359 1.86074 1.71001 1.22366 1.43135 1.22819 0.98583 0.92818 0.86165 1.22328 0.97397 0.93815 0.99246 0.87637 1.23801 0.96894 0.99500 0.99936 1.23332 0.95629 0.96335 0.83022 0.89739 1.86522 1.39504 1.84882 1.25694 1.23059 0.96244 0.99069 0.97347 1.20222 1.02909 0.94096 0.97193 0.77182 0.90357 1.17927 1.18650 0.85384 0.85096 0.85248 0.91637 0.91539 0.90742 0.89090 0.77180 0.88809 0.90075 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.02 12.75 -35.23 -0.45 -1.47 16 2 C -0.08 -0.05 2.81 36.01 0.10 0.05 16 3 Si 0.69 -0.36 29.79 -169.99 -5.06 -5.43 16 4 C -0.03 -0.08 5.42 -104.64 -0.57 -0.65 16 5 C -0.15 -0.18 8.67 -39.56 -0.34 -0.53 16 6 C -0.07 -0.06 10.04 -39.61 -0.40 -0.45 16 7 C -0.21 -0.30 9.04 -39.43 -0.36 -0.65 16 8 C 0.13 0.39 6.69 -39.21 -0.26 0.13 16 9 O -0.31 -0.87 10.14 -19.41 -0.20 -1.07 16 10 C 0.07 0.01 4.57 37.16 0.17 0.18 16 11 C -0.11 0.06 4.00 -89.80 -0.36 -0.30 16 12 H 0.11 -0.08 8.14 -51.93 -0.42 -0.50 16 13 C -0.16 0.04 7.48 -25.82 -0.19 -0.15 16 14 C 0.08 -0.04 5.21 -25.83 -0.13 -0.17 16 15 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 16 O -0.56 -0.44 13.67 -35.23 -0.48 -0.92 16 17 C -0.12 0.09 7.48 -25.92 -0.19 -0.10 16 18 C -0.13 -0.41 9.56 -39.43 -0.38 -0.78 16 19 H 0.38 -0.87 8.74 45.56 0.40 -0.47 16 20 H 0.08 -0.08 7.96 -51.93 -0.41 -0.50 16 21 H -0.25 -0.68 7.11 56.52 0.40 -0.27 16 22 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 23 H 0.13 -0.10 4.87 -52.49 -0.26 -0.36 16 24 H 0.13 -0.22 8.06 -52.48 -0.42 -0.64 16 25 H 0.13 -0.06 6.30 -52.49 -0.33 -0.39 16 26 H 0.07 -0.01 7.39 -51.93 -0.38 -0.40 16 27 H 0.07 -0.06 7.66 -51.93 -0.40 -0.46 16 28 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.09 0.05 7.92 -51.93 -0.41 -0.37 16 30 H 0.38 -1.20 9.12 45.56 0.42 -0.79 16 31 H 0.09 -0.03 8.10 -51.93 -0.42 -0.46 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 LS Contribution 278.27 15.07 4.19 4.19 Total: 0.00 -6.80 278.27 -8.44 -15.25 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -3.53 Total: -7.14 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.91 Total: -3.42 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -1.13 Total: -3.46 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.06 Total: -5.43 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -6.80 -8.44 -15.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_11354860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.268 kcal (2) G-P(sol) polarization free energy of solvation -6.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds