Wall clock time and date at job start Mon Mar 8 2021 09:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.38248 * 119.97185 * 119.99938 * 4 2 1 6 6 C 1.38280 * 120.10973 * 180.02562 * 5 4 2 7 7 C 1.38128 * 120.06015 * 0.02562 * 6 5 4 8 8 C 1.38752 * 119.94154 * 359.97438 * 7 6 5 9 9 O 1.35894 * 120.05867 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99516 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.08997 * 112.85450 * 314.66505 * 11 10 9 13 13 C 1.53786 * 113.61288 * 85.86101 * 11 10 9 14 14 C 1.53959 * 87.01718 * 139.94989 * 13 11 10 15 15 H 1.09001 * 113.60960 * 89.20059 * 14 13 11 16 16 O 1.42905 * 113.66732 * 220.06783 * 14 13 11 17 17 C 1.53779 * 87.11467 * 334.63882 * 14 13 11 18 18 C 1.38163 * 119.97302 * 299.72744 * 4 2 1 19 19 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 20 20 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 21 21 H 1.48495 * 110.00011 * 300.00099 * 3 2 1 22 22 H 1.48509 * 109.99497 * 61.32113 * 3 2 1 23 23 H 1.07998 * 119.94204 * 359.97438 * 5 4 2 24 24 H 1.08008 * 119.97092 * 179.97438 * 6 5 4 25 25 H 1.07991 * 120.03161 * 179.97438 * 7 6 5 26 26 H 1.08994 * 109.47474 * 299.99329 * 10 9 8 27 27 H 1.08993 * 109.47270 * 59.99930 * 10 9 8 28 28 H 1.08994 * 113.61822 * 254.53037 * 13 11 10 29 29 H 1.09005 * 113.61073 * 25.43570 * 13 11 10 30 30 H 0.96705 * 113.99955 * 277.56507 * 16 14 13 31 31 H 1.09000 * 113.61294 * 270.81405 * 17 14 13 32 32 H 1.08996 * 113.68994 * 139.91800 * 17 14 13 33 33 H 1.08005 * 120.02914 * 0.02562 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7260 -0.0379 -2.1401 6 6 3.1881 -0.6868 -3.2704 7 6 2.8560 -2.0089 -3.4937 8 6 2.0585 -2.6860 -2.5822 9 8 1.7308 -3.9869 -2.7992 10 6 2.2427 -4.5954 -3.9865 11 6 1.7723 -6.0496 -4.0578 12 1 1.8803 -6.5765 -3.1098 13 6 0.3856 -6.2176 -4.7013 14 6 0.9507 -7.4670 -5.4013 15 1 0.8333 -8.3827 -4.8218 16 8 0.5206 -7.6090 -6.7567 17 6 2.3397 -6.8225 -5.2602 18 6 1.6018 -2.0348 -1.4458 19 1 -0.3934 0.4417 0.7651 20 1 1.7923 -0.5139 0.8900 21 1 1.5616 2.4679 -1.2084 22 1 1.5879 2.4585 1.2244 23 1 2.9858 0.9961 -1.9680 24 1 3.8085 -0.1592 -3.9798 25 1 3.2168 -2.5151 -4.3767 26 1 1.8792 -4.0525 -4.8589 27 1 3.3321 -4.5669 -3.9687 28 1 -0.4049 -6.4378 -3.9839 29 1 0.1229 -5.4133 -5.3885 30 1 -0.3525 -8.0138 -6.8519 31 1 2.6122 -6.1839 -6.1004 32 1 3.1254 -7.5293 -4.9934 33 1 0.9842 -2.5609 -0.7329 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_11354860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:26 Heat of formation + Delta-G solvation = -64.222799 kcal Electronic energy + Delta-G solvation = -16353.627490 eV Core-core repulsion = 13540.232866 eV Total energy + Delta-G solvation = -2813.394624 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38506 -40.28944 -38.89840 -37.44951 -36.02882 -32.61131 -31.55724 -29.11513 -26.84689 -26.76231 -23.81283 -23.64111 -21.84996 -20.61715 -18.89564 -18.59610 -18.55152 -17.32074 -17.13330 -16.97717 -16.29235 -15.87586 -15.76168 -15.24832 -14.63046 -14.55816 -14.14739 -13.94253 -13.61219 -13.49313 -13.26875 -12.78186 -12.55838 -12.45654 -12.19089 -12.01687 -11.75892 -11.66756 -11.24234 -10.77055 -10.58490 -9.91128 -9.26533 -4.92463 0.18755 0.38658 1.27471 1.60662 1.93405 2.10249 2.61918 3.26979 3.35544 3.44265 3.53553 3.71609 3.81576 3.82881 3.92198 4.07060 4.17695 4.20870 4.25978 4.29570 4.37057 4.49848 4.62584 4.69634 4.72361 4.76950 4.94496 4.97285 5.10126 5.24008 5.33963 5.36741 5.44439 5.70518 6.38041 6.56009 6.84184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.093 4.093 3 Si 0.776 3.224 4 C -0.047 4.047 5 C -0.162 4.162 6 C -0.073 4.073 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.329 6.329 10 C 0.068 3.932 11 C -0.106 4.106 12 H 0.108 0.892 13 C -0.165 4.165 14 C 0.075 3.925 15 H 0.099 0.901 16 O -0.581 6.581 17 C -0.118 4.118 18 C -0.149 4.149 19 H 0.395 0.605 20 H 0.095 0.905 21 H -0.297 1.297 22 H -0.284 1.284 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.146 0.854 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -0.612 0.856 3.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.201 4.201 3 Si 0.680 3.320 4 C -0.047 4.047 5 C -0.179 4.179 6 C -0.091 4.091 7 C -0.230 4.230 8 C 0.070 3.930 9 O -0.243 6.243 10 C -0.007 4.007 11 C -0.124 4.124 12 H 0.126 0.874 13 C -0.203 4.203 14 C 0.016 3.984 15 H 0.117 0.883 16 O -0.390 6.390 17 C -0.156 4.156 18 C -0.168 4.168 19 H 0.246 0.754 20 H 0.112 0.888 21 H -0.225 1.225 22 H -0.212 1.212 23 H 0.164 0.836 24 H 0.176 0.824 25 H 0.164 0.836 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.554 0.022 0.308 3.567 hybrid contribution -1.875 -0.433 0.522 1.994 sum 1.679 -0.411 0.830 1.918 Atomic orbital electron populations 1.86551 1.18548 1.80841 1.51043 1.25170 0.84134 1.12526 0.98261 0.93987 0.90228 0.71277 0.76477 1.19302 0.96808 0.92831 0.95799 1.21135 1.00897 1.00669 0.95223 1.21270 0.97578 0.93511 0.96740 1.21567 1.03108 0.96998 1.01282 1.19190 0.95119 0.83838 0.94811 1.86046 1.71518 1.22545 1.44239 1.22963 0.99299 0.92991 0.85417 1.22309 0.97150 0.93497 0.99462 0.87415 1.23781 0.97155 0.99543 0.99845 1.23441 0.95587 0.96695 0.82692 0.88288 1.86477 1.40811 1.85228 1.26437 1.23058 0.96518 0.99097 0.96896 1.20322 1.03865 0.94888 0.97693 0.75403 0.88766 1.22493 1.21157 0.83629 0.82397 0.83594 0.91516 0.90344 0.90827 0.90139 0.75495 0.89312 0.89002 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.57 12.75 -148.98 -1.90 -4.47 16 2 C -0.09 -0.15 2.81 71.24 0.20 0.05 16 3 Si 0.78 -1.05 29.79 68.60 2.04 1.00 16 4 C -0.05 -0.24 5.42 -19.88 -0.11 -0.35 16 5 C -0.16 -0.34 8.67 22.28 0.19 -0.15 16 6 C -0.07 -0.06 10.04 22.25 0.22 0.17 16 7 C -0.21 -0.60 9.04 22.37 0.20 -0.40 16 8 C 0.12 0.81 6.69 22.51 0.15 0.96 16 9 O -0.33 -2.24 10.14 -92.36 -0.94 -3.18 16 10 C 0.07 0.05 4.57 71.98 0.33 0.38 16 11 C -0.11 0.09 4.00 -10.26 -0.04 0.05 16 12 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 13 C -0.17 -0.02 7.48 31.18 0.23 0.21 16 14 C 0.07 -0.08 5.21 31.18 0.16 0.09 16 15 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 16 O -0.58 -0.95 13.67 -148.98 -2.04 -2.99 16 17 C -0.12 0.20 7.48 31.12 0.23 0.44 16 18 C -0.15 -1.20 9.56 22.37 0.21 -0.98 16 19 H 0.40 -1.59 8.74 -74.05 -0.65 -2.24 16 20 H 0.09 -0.20 7.96 -2.39 -0.02 -0.22 16 21 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 22 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 23 H 0.15 -0.35 4.87 -2.91 -0.01 -0.36 16 24 H 0.16 -0.82 8.06 -2.91 -0.02 -0.85 16 25 H 0.15 -0.20 6.30 -2.92 -0.02 -0.22 16 26 H 0.07 0.01 7.39 -2.39 -0.02 -0.01 16 27 H 0.08 -0.15 7.66 -2.39 -0.02 -0.17 16 28 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.08 0.17 7.92 -2.38 -0.02 0.16 16 30 H 0.39 -2.46 9.12 -74.05 -0.68 -3.13 16 31 H 0.09 -0.06 8.10 -2.39 -0.02 -0.08 16 32 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.12 1.06 8.06 -2.91 -0.02 1.04 16 Total: 0.00 -16.22 278.27 -1.00 -17.21 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: -0.16 Total: -8.03 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 1.99 Total: 0.46 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -4.87 Total: -10.64 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.04 Total: 1.00 kcal Total: -16.22 -1.00 -17.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_11354860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.009 kcal (2) G-P(sol) polarization free energy of solvation -16.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds