Wall clock time and date at job start Mon Mar 8 2021 07:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.08998 * 112.85041 * 18.80250 * 6 5 2 8 8 C 1.53784 * 113.61372 * 149.99499 * 6 5 2 9 9 C 1.53786 * 87.07816 * 139.98094 * 8 6 5 10 10 H 1.08997 * 113.61029 * 89.20388 * 9 8 6 11 11 C 1.52994 * 113.61130 * 220.02013 * 9 8 6 12 12 O 1.42901 * 109.46811 * 185.00139 * 11 9 8 13 13 C 1.35901 * 117.00202 * 180.02562 * 12 11 9 14 14 C 1.38713 * 120.05999 * 180.02562 * 13 12 11 15 15 C 1.38162 * 119.94732 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.97502 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47056 * 300.00092 * 16 15 14 18 18 Si 1.86295 * 109.47420 * 180.02562 * 16 15 14 19 19 C 1.38243 * 120.05391 * 359.97438 * 15 14 13 20 20 C 1.38286 * 120.11676 * 0.02562 * 19 15 14 21 21 C 1.38128 * 120.04957 * 359.67925 * 20 19 15 22 22 C 1.53781 * 87.08314 * 334.56873 * 9 8 6 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 32 32 H 1.08989 * 113.61477 * 254.53146 * 8 6 5 33 33 H 1.09002 * 113.61291 * 25.35018 * 8 6 5 34 34 H 1.08995 * 109.47336 * 304.99973 * 11 9 8 35 35 H 1.09001 * 109.47835 * 65.00491 * 11 9 8 36 36 H 1.08005 * 120.02276 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47104 * 59.99654 * 16 15 14 38 38 H 0.96703 * 114.00216 * 299.99957 * 17 16 15 39 39 H 1.48504 * 110.00026 * 58.68003 * 18 16 15 40 40 H 1.48503 * 110.00386 * 180.02562 * 18 16 15 41 41 H 1.08009 * 119.94420 * 180.02562 * 19 15 14 42 42 H 1.07999 * 119.98076 * 179.97438 * 20 19 15 43 43 H 1.07999 * 120.02476 * 180.32056 * 21 20 19 44 44 H 1.09000 * 113.61637 * 270.88478 * 22 9 8 45 45 H 1.08999 * 113.61745 * 139.98123 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.2524 0.9535 -2.2729 8 6 2.5838 -0.2699 -3.5482 9 6 1.3668 -0.5003 -4.4596 10 1 0.9747 0.4144 -4.9039 11 6 1.5713 -1.6182 -5.4840 12 8 0.4400 -1.6790 -6.3549 13 6 0.4619 -2.6257 -7.3296 14 6 -0.6033 -2.7405 -8.2107 15 6 -0.5789 -3.7042 -9.2005 16 6 -1.7361 -3.8298 -10.1577 17 8 -2.9302 -4.1155 -9.4265 18 14 -1.3997 -5.2119 -11.3607 19 6 0.5061 -4.5533 -9.3134 20 6 1.5694 -4.4410 -8.4364 21 6 1.5525 -3.4752 -7.4490 22 6 0.6077 -0.9503 -3.2002 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2493 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -0.2074 2.1393 32 1 3.1478 0.6303 -3.7921 33 1 3.2182 -1.1489 -3.4340 34 1 2.4691 -1.4159 -6.0681 35 1 1.6822 -2.5705 -4.9654 36 1 -1.4514 -2.0776 -8.1225 37 1 -1.8593 -2.8944 -10.7035 38 1 -2.8920 -4.9358 -8.9158 39 1 -1.1986 -6.4869 -10.6263 40 1 -2.5333 -5.3457 -12.3106 41 1 0.5235 -5.3057 -10.0881 42 1 2.4157 -5.1057 -8.5264 43 1 2.3854 -3.3845 -6.7675 44 1 0.7009 -2.0161 -2.9916 45 1 -0.4236 -0.5993 -3.1632 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_14598386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:45:06 Heat of formation + Delta-G solvation = -70.011997 kcal Electronic energy + Delta-G solvation = -23363.216927 eV Core-core repulsion = 19927.420789 eV Total energy + Delta-G solvation = -3435.796138 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41100 -40.75905 -39.23458 -38.16665 -37.20708 -33.92493 -32.44652 -31.49154 -29.26876 -28.42380 -28.29428 -26.80984 -26.67299 -23.98074 -23.60521 -22.03906 -20.83628 -20.66194 -19.12969 -17.92405 -17.76635 -17.23647 -16.98305 -16.95331 -16.47883 -16.15811 -15.94761 -15.63343 -15.35676 -14.84634 -14.60288 -14.44713 -14.26732 -14.05157 -13.62665 -13.49394 -13.35176 -13.33007 -13.05272 -12.94694 -12.85327 -12.71005 -12.50563 -12.44906 -12.22337 -12.00369 -11.85195 -11.73475 -11.54608 -11.38779 -11.21609 -10.63327 -10.37350 -9.89169 -9.19163 -4.93706 0.24408 0.45216 1.28902 1.62452 1.95630 2.14331 2.70791 2.71487 3.38536 3.41932 3.51590 3.64311 3.72038 3.75057 3.85202 3.86104 3.93576 4.02993 4.04531 4.09659 4.21020 4.24065 4.27558 4.42998 4.50020 4.53458 4.58466 4.61347 4.68331 4.71351 4.72964 4.74832 4.78942 4.85893 4.88709 4.96688 5.00676 5.07153 5.12297 5.26208 5.27897 5.30487 5.33974 5.40984 5.47222 5.73222 6.38383 6.41805 6.45152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 C -0.179 4.179 4 C -0.139 4.139 5 O -0.362 6.362 6 C 0.062 3.938 7 H 0.093 0.907 8 C -0.127 4.127 9 C -0.110 4.110 10 H 0.104 0.896 11 C 0.072 3.928 12 O -0.312 6.312 13 C 0.133 3.867 14 C -0.127 4.127 15 C -0.079 4.079 16 C -0.076 4.076 17 O -0.528 6.528 18 Si 0.689 3.311 19 C -0.156 4.156 20 C -0.073 4.073 21 C -0.205 4.205 22 C -0.148 4.148 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.376 0.624 39 H -0.260 1.260 40 H -0.257 1.257 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 0.913 0.610 3.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.066 3.934 3 C -0.237 4.237 4 C -0.196 4.196 5 O -0.281 6.281 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.164 4.164 9 C -0.128 4.128 10 H 0.123 0.877 11 C -0.003 4.003 12 O -0.226 6.226 13 C 0.087 3.913 14 C -0.146 4.146 15 C -0.080 4.080 16 C -0.186 4.186 17 O -0.335 6.335 18 Si 0.590 3.410 19 C -0.174 4.174 20 C -0.091 4.091 21 C -0.224 4.224 22 C -0.185 4.185 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.224 0.776 39 H -0.185 1.185 40 H -0.182 1.182 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.716 0.686 0.100 2.803 hybrid contribution -0.501 -0.146 1.077 1.197 sum 2.215 0.540 1.176 2.565 Atomic orbital electron populations 1.22472 0.95456 1.02934 1.02536 1.21541 0.93254 0.92077 0.86558 1.22471 1.02322 0.96276 1.02581 1.21771 1.02000 1.00916 0.94934 1.88033 1.73830 1.53473 1.12766 1.23574 0.95609 0.97030 0.83380 0.88975 1.23228 0.96356 1.03313 0.93528 1.22317 0.98541 0.98784 0.93178 0.87748 1.22824 0.87640 0.99117 0.90709 1.86085 1.43359 1.51862 1.41249 1.19026 0.94330 0.88910 0.89022 1.20256 0.98195 1.00749 0.95405 1.20075 0.95976 0.95362 0.96579 1.25088 0.84388 1.10769 0.98365 1.86606 1.35741 1.45970 1.65154 0.94898 0.87511 0.77152 0.81422 1.20912 0.94767 1.00859 1.00867 1.20916 0.97963 0.96711 0.93540 1.21336 0.99157 0.99195 1.02677 1.23616 0.99096 1.01453 0.94377 0.92272 0.91674 0.91519 0.91338 0.91594 0.92219 0.91771 0.91759 0.91045 0.90369 0.88804 0.91616 0.91627 0.84883 0.86220 0.77606 1.18485 1.18241 0.85416 0.85223 0.85279 0.89119 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.06 8.38 37.16 0.31 0.37 16 2 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 3 C -0.18 0.12 8.38 37.16 0.31 0.43 16 4 C -0.14 0.03 8.84 37.16 0.33 0.36 16 5 O -0.36 -0.62 10.00 -35.23 -0.35 -0.97 16 6 C 0.06 0.00 2.82 -25.92 -0.07 -0.08 16 7 H 0.09 -0.07 5.54 -51.93 -0.29 -0.36 16 8 C -0.13 0.12 7.47 -25.91 -0.19 -0.07 16 9 C -0.11 0.07 4.01 -89.81 -0.36 -0.29 16 10 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 11 C 0.07 -0.01 4.58 37.15 0.17 0.16 16 12 O -0.31 -0.75 10.14 -19.43 -0.20 -0.95 16 13 C 0.13 0.31 6.69 -39.21 -0.26 0.05 16 14 C -0.13 -0.30 9.55 -39.43 -0.38 -0.68 16 15 C -0.08 -0.09 5.39 -104.65 -0.56 -0.65 16 16 C -0.08 -0.03 2.82 36.00 0.10 0.07 16 17 O -0.53 -1.01 12.77 -35.23 -0.45 -1.46 16 18 Si 0.69 -0.43 29.78 -169.99 -5.06 -5.49 16 19 C -0.16 -0.03 8.67 -39.56 -0.34 -0.38 16 20 C -0.07 -0.01 10.04 -39.60 -0.40 -0.41 16 21 C -0.20 -0.18 9.04 -39.43 -0.36 -0.54 16 22 C -0.15 0.00 7.46 -25.92 -0.19 -0.20 16 23 H 0.06 -0.03 7.02 -51.93 -0.36 -0.39 16 24 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 26 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.06 -0.06 6.24 -51.93 -0.32 -0.38 16 29 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 33 H 0.09 -0.07 8.10 -51.93 -0.42 -0.49 16 34 H 0.07 -0.07 7.65 -51.93 -0.40 -0.47 16 35 H 0.07 -0.03 7.37 -51.93 -0.38 -0.42 16 36 H 0.13 0.34 8.06 -52.48 -0.42 -0.08 16 37 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 38 H 0.38 -0.33 8.70 45.56 0.40 0.06 16 39 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 40 H -0.26 -0.68 7.11 56.52 0.40 -0.28 16 41 H 0.13 -0.21 4.88 -52.48 -0.26 -0.46 16 42 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 43 H 0.13 -0.10 6.30 -52.49 -0.33 -0.43 16 44 H 0.09 0.07 7.90 -51.93 -0.41 -0.34 16 45 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 LS Contribution 357.35 15.07 5.39 5.39 Total: 0.00 -5.08 357.35 -10.14 -15.21 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: -7.46 Total: -9.82 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.00 Total: -1.91 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -1.00 Total: -3.38 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.06 Total: -5.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -5.08 -10.14 -15.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_14598386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.798 kcal (2) G-P(sol) polarization free energy of solvation -5.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds