Wall clock time and date at job start Mon Mar 8 2021 07:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.08998 * 112.85041 * 18.80250 * 6 5 2 8 8 C 1.53784 * 113.61372 * 149.99499 * 6 5 2 9 9 C 1.53786 * 87.07816 * 139.98094 * 8 6 5 10 10 H 1.08997 * 113.61029 * 89.20388 * 9 8 6 11 11 C 1.52994 * 113.61130 * 220.02013 * 9 8 6 12 12 O 1.42901 * 109.46811 * 185.00139 * 11 9 8 13 13 C 1.35901 * 117.00202 * 180.02562 * 12 11 9 14 14 C 1.38713 * 120.05999 * 180.02562 * 13 12 11 15 15 C 1.38162 * 119.94732 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.97502 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47056 * 300.00092 * 16 15 14 18 18 Si 1.86295 * 109.47420 * 180.02562 * 16 15 14 19 19 C 1.38243 * 120.05391 * 359.97438 * 15 14 13 20 20 C 1.38286 * 120.11676 * 0.02562 * 19 15 14 21 21 C 1.38128 * 120.04957 * 359.67925 * 20 19 15 22 22 C 1.53781 * 87.08314 * 334.56873 * 9 8 6 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 32 32 H 1.08989 * 113.61477 * 254.53146 * 8 6 5 33 33 H 1.09002 * 113.61291 * 25.35018 * 8 6 5 34 34 H 1.08995 * 109.47336 * 304.99973 * 11 9 8 35 35 H 1.09001 * 109.47835 * 65.00491 * 11 9 8 36 36 H 1.08005 * 120.02276 * 359.97438 * 14 13 12 37 37 H 1.09003 * 109.47104 * 59.99654 * 16 15 14 38 38 H 0.96703 * 114.00216 * 299.99957 * 17 16 15 39 39 H 1.48504 * 110.00026 * 58.68003 * 18 16 15 40 40 H 1.48503 * 110.00386 * 180.02562 * 18 16 15 41 41 H 1.08009 * 119.94420 * 180.02562 * 19 15 14 42 42 H 1.07999 * 119.98076 * 179.97438 * 20 19 15 43 43 H 1.07999 * 120.02476 * 180.32056 * 21 20 19 44 44 H 1.09000 * 113.61637 * 270.88478 * 22 9 8 45 45 H 1.08999 * 113.61745 * 139.98123 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.2524 0.9535 -2.2729 8 6 2.5838 -0.2699 -3.5482 9 6 1.3668 -0.5003 -4.4596 10 1 0.9747 0.4144 -4.9039 11 6 1.5713 -1.6182 -5.4840 12 8 0.4400 -1.6790 -6.3549 13 6 0.4619 -2.6257 -7.3296 14 6 -0.6033 -2.7405 -8.2107 15 6 -0.5789 -3.7042 -9.2005 16 6 -1.7361 -3.8298 -10.1577 17 8 -2.9302 -4.1155 -9.4265 18 14 -1.3997 -5.2119 -11.3607 19 6 0.5061 -4.5533 -9.3134 20 6 1.5694 -4.4410 -8.4364 21 6 1.5525 -3.4752 -7.4490 22 6 0.6077 -0.9503 -3.2002 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2493 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -0.2074 2.1393 32 1 3.1478 0.6303 -3.7921 33 1 3.2182 -1.1489 -3.4340 34 1 2.4691 -1.4159 -6.0681 35 1 1.6822 -2.5705 -4.9654 36 1 -1.4514 -2.0776 -8.1225 37 1 -1.8593 -2.8944 -10.7035 38 1 -2.8920 -4.9358 -8.9158 39 1 -1.1986 -6.4869 -10.6263 40 1 -2.5333 -5.3457 -12.3106 41 1 0.5235 -5.3057 -10.0881 42 1 2.4157 -5.1057 -8.5264 43 1 2.3854 -3.3845 -6.7675 44 1 0.7009 -2.0161 -2.9916 45 1 -0.4236 -0.5993 -3.1632 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_14598386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:45:05 Heat of formation + Delta-G solvation = -63.579046 kcal Electronic energy + Delta-G solvation = -23362.937974 eV Core-core repulsion = 19927.420789 eV Total energy + Delta-G solvation = -3435.517185 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44394 -40.77059 -39.27991 -38.18249 -37.27546 -33.93584 -32.48896 -31.53186 -29.27298 -28.37604 -28.26971 -26.85144 -26.64720 -23.98125 -23.64827 -22.07228 -20.82818 -20.64084 -19.18614 -17.96864 -17.80192 -17.25192 -17.02012 -16.98370 -16.48532 -16.21169 -15.94920 -15.64326 -15.40821 -14.84637 -14.59023 -14.44243 -14.31211 -14.12980 -13.62860 -13.46803 -13.34829 -13.31247 -13.02749 -12.96973 -12.82045 -12.69069 -12.54084 -12.45727 -12.21652 -12.04310 -11.87233 -11.71267 -11.58180 -11.36679 -11.19532 -10.69111 -10.38450 -9.94054 -9.25692 -4.91312 0.19652 0.39679 1.29042 1.61711 1.93341 2.12391 2.66059 2.73360 3.38489 3.44740 3.54214 3.62886 3.74823 3.77453 3.85188 3.89322 3.96216 4.04786 4.07839 4.13242 4.23402 4.25107 4.27397 4.44506 4.52148 4.55820 4.59994 4.64468 4.67949 4.75333 4.76098 4.76667 4.83280 4.89806 4.92010 4.96845 4.99548 5.10551 5.15183 5.26045 5.29431 5.31065 5.36140 5.38230 5.43502 5.72540 6.38265 6.40855 6.44946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.177 4.177 4 C -0.139 4.139 5 O -0.381 6.381 6 C 0.060 3.940 7 H 0.100 0.900 8 C -0.120 4.120 9 C -0.104 4.104 10 H 0.105 0.895 11 C 0.070 3.930 12 O -0.330 6.330 13 C 0.116 3.884 14 C -0.149 4.149 15 C -0.082 4.082 16 C -0.090 4.090 17 O -0.550 6.550 18 Si 0.780 3.220 19 C -0.159 4.159 20 C -0.074 4.074 21 C -0.210 4.210 22 C -0.149 4.149 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.386 0.614 39 H -0.280 1.280 40 H -0.303 1.303 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 0.770 0.434 4.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.059 3.941 3 C -0.234 4.234 4 C -0.197 4.197 5 O -0.301 6.301 6 C 0.002 3.998 7 H 0.117 0.883 8 C -0.158 4.158 9 C -0.123 4.123 10 H 0.123 0.877 11 C -0.004 4.004 12 O -0.245 6.245 13 C 0.071 3.929 14 C -0.167 4.167 15 C -0.082 4.082 16 C -0.198 4.198 17 O -0.358 6.358 18 Si 0.685 3.315 19 C -0.177 4.177 20 C -0.092 4.092 21 C -0.228 4.228 22 C -0.187 4.187 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.235 0.765 39 H -0.206 1.206 40 H -0.232 1.232 41 H 0.166 0.834 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.099 0.901 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.831 0.559 -0.055 3.872 hybrid contribution -0.888 -0.110 1.147 1.455 sum 2.943 0.449 1.091 3.171 Atomic orbital electron populations 1.22449 0.95180 1.02503 1.03030 1.21677 0.93536 0.92587 0.86269 1.22447 1.02031 0.95711 1.03207 1.21794 1.01755 1.00697 0.95404 1.88008 1.74184 1.54296 1.13569 1.23667 0.95855 0.97180 0.83075 0.88253 1.23192 0.96086 1.03744 0.92744 1.22275 0.98578 0.98634 0.92783 0.87669 1.22940 0.87460 0.99403 0.90641 1.86055 1.44543 1.52197 1.41663 1.19208 0.94951 0.89507 0.89231 1.20318 0.98287 1.01543 0.96586 1.20155 0.96495 0.95243 0.96314 1.25403 0.83840 1.11992 0.98567 1.86571 1.36611 1.46910 1.65669 0.93883 0.85161 0.74513 0.77978 1.21174 0.94358 1.00817 1.01326 1.21280 0.98596 0.96527 0.92758 1.21569 0.99079 0.98983 1.03197 1.23592 0.99088 1.00919 0.95116 0.92224 0.92560 0.90555 0.90439 0.92004 0.91873 0.92470 0.92134 0.89753 0.89251 0.88952 0.90430 0.91385 0.86179 0.85915 0.76486 1.20640 1.23164 0.83450 0.82630 0.83794 0.90102 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.07 8.38 71.98 0.60 0.68 16 2 C 0.10 0.07 1.11 -10.79 -0.01 0.06 16 3 C -0.18 0.29 8.38 71.98 0.60 0.89 16 4 C -0.14 0.03 8.84 71.98 0.64 0.66 16 5 O -0.38 -1.50 10.00 -148.98 -1.49 -2.99 16 6 C 0.06 0.01 2.82 31.12 0.09 0.10 16 7 H 0.10 -0.16 5.54 -2.39 -0.01 -0.17 16 8 C -0.12 0.24 7.47 31.12 0.23 0.47 16 9 C -0.10 0.09 4.01 -10.27 -0.04 0.05 16 10 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 11 C 0.07 0.01 4.58 71.98 0.33 0.34 16 12 O -0.33 -1.96 10.14 -92.44 -0.94 -2.90 16 13 C 0.12 0.64 6.69 22.51 0.15 0.79 16 14 C -0.15 -0.91 9.55 22.37 0.21 -0.69 16 15 C -0.08 -0.21 5.39 -19.88 -0.11 -0.31 16 16 C -0.09 -0.12 2.82 71.24 0.20 0.08 16 17 O -0.55 -2.65 12.77 -148.98 -1.90 -4.55 16 18 Si 0.78 -1.21 29.78 68.60 2.04 0.84 16 19 C -0.16 0.08 8.67 22.28 0.19 0.27 16 20 C -0.07 0.08 10.04 22.26 0.22 0.30 16 21 C -0.21 -0.28 9.04 22.37 0.20 -0.08 16 22 C -0.15 -0.15 7.46 31.12 0.23 0.08 16 23 H 0.06 -0.04 7.02 -2.39 -0.02 -0.05 16 24 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.06 -0.15 6.24 -2.39 -0.01 -0.17 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 33 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 34 H 0.08 -0.19 7.65 -2.39 -0.02 -0.21 16 35 H 0.07 -0.04 7.37 -2.39 -0.02 -0.06 16 36 H 0.12 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 38 H 0.39 -0.34 8.70 -74.06 -0.64 -0.98 16 39 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 40 H -0.30 -1.87 7.11 99.48 0.71 -1.16 16 41 H 0.15 -0.74 4.88 -2.91 -0.01 -0.76 16 42 H 0.16 -1.02 8.06 -2.91 -0.02 -1.05 16 43 H 0.14 -0.35 6.30 -2.91 -0.02 -0.37 16 44 H 0.08 0.24 7.90 -2.39 -0.02 0.22 16 45 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 Total: 0.00 -12.71 357.35 1.82 -10.89 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: 0.36 Total: -4.96 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 3.75 Total: 3.68 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -4.33 Total: -10.44 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.04 Total: 0.84 kcal Total: -12.71 1.82 -10.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_14598386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.688 kcal (2) G-P(sol) polarization free energy of solvation -12.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds