Wall clock time and date at job start Mon Mar 8 2021 08:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86305 * 109.47247 * 2 1 4 4 C 1.50699 * 109.47384 * 240.00443 * 2 1 3 5 5 C 1.38240 * 119.97766 * 120.01693 * 4 2 1 6 6 C 1.38284 * 120.11388 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05469 * 359.77091 * 6 5 4 8 8 C 1.38755 * 119.94319 * 0.50801 * 7 6 5 9 9 O 1.35900 * 120.05348 * 179.74570 * 8 7 6 10 10 C 1.42900 * 117.00397 * 359.72641 * 9 8 7 11 11 C 1.53000 * 109.47069 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47131 * 55.00128 * 11 10 9 13 13 C 1.53002 * 109.46806 * 174.99592 * 11 10 9 14 14 C 1.52997 * 109.46978 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47415 * 300.00098 * 14 13 11 16 16 H 1.09002 * 109.47070 * 300.00053 * 15 14 13 17 17 O 1.42898 * 109.47113 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.46817 * 59.99873 * 15 14 13 19 19 C 1.52992 * 109.47482 * 300.00014 * 18 15 14 20 20 C 1.38175 * 119.96745 * 300.00185 * 4 2 1 21 21 H 0.96705 * 113.99908 * 59.99507 * 1 2 3 22 22 H 1.08999 * 109.47517 * 120.00005 * 2 1 3 23 23 H 1.48500 * 109.99911 * 59.99902 * 3 2 1 24 24 H 1.48502 * 110.00309 * 181.31824 * 3 2 1 25 25 H 1.07995 * 119.94285 * 359.97438 * 5 4 2 26 26 H 1.07997 * 119.97663 * 180.02562 * 6 5 4 27 27 H 1.08003 * 120.02915 * 180.27826 * 7 6 5 28 28 H 1.08991 * 109.47113 * 59.99766 * 10 9 8 29 29 H 1.09002 * 109.46699 * 299.99986 * 10 9 8 30 30 H 1.09002 * 109.47097 * 59.99871 * 13 11 10 31 31 H 1.08998 * 109.47844 * 300.00086 * 13 11 10 32 32 H 1.09000 * 109.47140 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47497 * 60.00450 * 14 13 11 34 34 H 0.96708 * 113.99549 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47153 * 60.00231 * 18 15 14 36 36 H 1.08998 * 109.47533 * 179.97438 * 18 15 14 37 37 H 1.09002 * 109.47103 * 300.00247 * 19 18 15 38 38 H 1.08996 * 109.47747 * 179.97438 * 19 18 15 39 39 H 1.08001 * 120.02417 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7264 -0.0380 -2.1399 6 6 3.1894 -0.6872 -3.2697 7 6 2.8622 -2.0110 -3.4898 8 6 2.0596 -2.6863 -2.5815 9 8 1.7320 -3.9873 -2.7985 10 6 2.2440 -4.5959 -3.9857 11 6 1.7726 -6.0497 -4.0575 12 1 0.6855 -6.0831 -3.9861 13 6 2.2155 -6.6643 -5.3869 14 6 1.7447 -8.1183 -5.4584 15 6 2.3569 -8.9102 -4.3013 16 1 3.4440 -8.8764 -4.3730 17 8 1.9167 -10.2681 -4.3679 18 6 1.9141 -8.2956 -2.9721 19 6 2.3849 -6.8417 -2.9004 20 6 1.5971 -2.0332 -1.4486 21 1 -0.3933 0.4418 -0.7651 22 1 1.7923 -0.5138 0.8899 23 1 1.5615 2.4679 1.2085 24 1 3.5346 1.7704 -0.0321 25 1 2.9863 0.9959 -1.9677 26 1 3.8107 -0.1600 -3.9785 27 1 3.2278 -2.5189 -4.3701 28 1 3.3334 -4.5672 -3.9679 29 1 1.8805 -4.0529 -4.8581 30 1 3.3026 -6.6308 -5.4584 31 1 1.7797 -6.0999 -6.2113 32 1 2.0605 -8.5563 -6.4053 33 1 0.6575 -8.1522 -5.3868 34 1 2.2664 -10.8299 -3.6628 35 1 0.8269 -8.3294 -2.9004 36 1 2.3498 -8.8600 -2.1477 37 1 3.4720 -6.8079 -2.9721 38 1 2.0690 -6.4036 -1.9537 39 1 0.9765 -2.5581 -0.7375 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:20:46 Heat of formation + Delta-G solvation = -109.285805 kcal Electronic energy + Delta-G solvation = -19957.247560 eV Core-core repulsion = 16830.823620 eV Total energy + Delta-G solvation = -3126.423940 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36294 -40.19243 -38.98770 -37.33988 -36.63269 -32.47805 -32.30298 -31.90588 -30.70815 -27.23039 -26.25429 -23.96523 -23.55592 -22.84478 -21.69874 -20.95576 -19.13299 -18.22952 -17.82414 -17.28551 -17.09070 -16.95438 -16.33358 -16.11971 -15.55047 -15.45517 -15.07206 -14.85105 -14.71864 -14.29059 -14.13722 -13.84666 -13.42399 -13.35643 -13.29242 -12.88281 -12.62992 -12.55231 -12.21262 -12.00348 -11.94230 -11.76141 -11.64220 -11.55055 -11.17421 -10.76141 -10.49810 -9.90461 -9.22070 -5.03514 0.21928 0.42264 1.27602 1.63234 1.94448 2.14265 2.68914 3.11764 3.44878 3.53899 3.61050 3.64611 3.68374 3.83963 3.99158 4.02214 4.05574 4.16069 4.20882 4.25513 4.26979 4.37620 4.37885 4.40943 4.49918 4.55726 4.64400 4.71260 4.87839 4.96638 4.98230 5.01767 5.08152 5.08692 5.24369 5.27311 5.35162 5.38292 5.44761 5.70383 6.41649 6.56652 6.67570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.070 4.070 3 Si 0.693 3.307 4 C -0.081 4.081 5 C -0.157 4.157 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.133 3.867 9 O -0.311 6.311 10 C 0.063 3.937 11 C -0.088 4.088 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.103 3.897 16 H 0.055 0.945 17 O -0.569 6.569 18 C -0.152 4.152 19 C -0.111 4.111 20 C -0.127 4.127 21 H 0.380 0.620 22 H 0.115 0.885 23 H -0.255 1.255 24 H -0.258 1.258 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.379 0.621 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 1.462 -2.889 3.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.595 3.405 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.087 3.913 9 O -0.225 6.225 10 C -0.012 4.012 11 C -0.106 4.106 12 H 0.104 0.896 13 C -0.147 4.147 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.073 0.927 17 O -0.375 6.375 18 C -0.190 4.190 19 C -0.149 4.149 20 C -0.146 4.146 21 H 0.227 0.773 22 H 0.132 0.868 23 H -0.180 1.180 24 H -0.183 1.183 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.793 1.836 -2.321 3.460 hybrid contribution 0.619 -0.804 0.446 1.108 sum 2.413 1.033 -1.875 3.225 Atomic orbital electron populations 1.86512 1.16929 1.81715 1.49239 1.25112 0.85378 1.10242 0.97330 0.94603 0.80942 0.77856 0.87067 1.20141 0.97483 0.93932 0.96562 1.20918 1.01120 0.99834 0.95623 1.20915 0.97807 0.93737 0.96663 1.21324 1.03448 0.96493 1.01158 1.19021 0.94315 0.83568 0.94374 1.86074 1.70904 1.22272 1.43224 1.22912 0.98601 0.93603 0.86086 1.21234 1.02023 0.91506 0.95868 0.89629 1.21475 1.01618 0.95321 0.96324 1.21440 1.01664 0.93709 0.98078 1.21846 0.97268 0.81707 0.94780 0.92743 1.86519 1.75316 1.20517 1.55148 1.22280 1.02493 0.96502 0.97743 1.21509 1.00373 0.94233 0.98747 1.20254 1.03191 0.94002 0.97119 0.77307 0.86769 1.17988 1.18298 0.85467 0.85237 0.85299 0.91829 0.91695 0.91288 0.90726 0.90803 0.90899 0.77367 0.90905 0.91521 0.91801 0.90711 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.38 12.77 -35.23 -0.45 -0.83 16 2 C -0.07 -0.02 2.82 36.01 0.10 0.08 16 3 Si 0.69 -0.62 29.79 -169.99 -5.06 -5.68 16 4 C -0.08 -0.07 5.39 -104.64 -0.56 -0.63 16 5 C -0.16 0.01 8.67 -39.56 -0.34 -0.33 16 6 C -0.07 0.02 10.04 -39.61 -0.40 -0.38 16 7 C -0.21 -0.09 9.04 -39.43 -0.36 -0.44 16 8 C 0.13 0.25 6.69 -39.22 -0.26 -0.02 16 9 O -0.31 -0.56 9.67 -19.43 -0.19 -0.75 16 10 C 0.06 -0.05 4.12 37.16 0.15 0.10 16 11 C -0.09 0.10 2.43 -90.62 -0.22 -0.12 16 12 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 13 C -0.11 0.21 5.20 -26.73 -0.14 0.07 16 14 C -0.11 0.05 5.57 -26.73 -0.15 -0.10 16 15 C 0.10 -0.02 3.47 -26.73 -0.09 -0.11 16 16 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 17 O -0.57 -0.64 13.32 -35.23 -0.47 -1.10 16 18 C -0.15 0.11 5.54 -26.74 -0.15 -0.04 16 19 C -0.11 0.08 5.10 -26.73 -0.14 -0.06 16 20 C -0.13 -0.26 9.55 -39.43 -0.38 -0.64 16 21 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 22 H 0.11 0.08 7.96 -51.93 -0.41 -0.34 16 23 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 24 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 25 H 0.13 -0.24 4.87 -52.49 -0.26 -0.50 16 26 H 0.13 -0.32 8.06 -52.49 -0.42 -0.74 16 27 H 0.13 -0.17 6.30 -52.48 -0.33 -0.50 16 28 H 0.06 -0.10 7.65 -51.93 -0.40 -0.50 16 29 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 30 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 31 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.38 -1.02 9.08 45.56 0.41 -0.61 16 35 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.07 0.03 7.82 -51.93 -0.41 -0.38 16 39 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 LS Contribution 312.84 15.07 4.71 4.71 Total: 0.00 -6.13 312.84 -9.63 -15.75 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: -5.24 Total: -9.49 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.93 Total: -2.61 kcal Atomic # 8 Polarization: -1.57 SS G_CDS: -1.11 Total: -2.68 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.06 Total: -5.68 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -6.13 -9.63 -15.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.535 kcal (2) G-P(sol) polarization free energy of solvation -6.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds