Wall clock time and date at job start Mon Mar 8 2021 08:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46907 * 2 1 4 4 C 1.52998 * 109.46784 * 240.00369 * 2 1 3 5 5 Si 1.86297 * 109.47276 * 120.00035 * 2 1 3 6 6 C 1.86298 * 109.47156 * 300.00109 * 5 2 1 7 7 C 1.86305 * 109.47000 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.47139 * 60.00076 * 5 2 1 9 9 C 1.42894 * 114.00055 * 179.97438 * 8 5 2 10 10 C 1.53002 * 109.47242 * 180.02562 * 9 8 5 11 11 O 1.42896 * 109.47055 * 65.00046 * 10 9 8 12 12 C 1.42904 * 114.00313 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47396 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47319 * 64.99884 * 13 12 11 15 15 C 1.35900 * 117.00172 * 179.97438 * 14 13 12 16 16 C 1.38710 * 120.05544 * 359.72769 * 15 14 13 17 17 C 1.38159 * 119.94311 * 179.72143 * 16 15 14 18 18 C 1.38250 * 120.05742 * 0.57011 * 17 16 15 19 19 C 1.38280 * 120.10833 * 359.68104 * 18 17 16 20 20 C 1.50697 * 119.97205 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47393 * 245.02079 * 20 19 18 22 22 Si 1.86306 * 109.47148 * 5.02162 * 20 19 18 23 23 H 1.48504 * 109.46673 * 59.99962 * 22 20 19 24 24 H 1.48495 * 109.47180 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.46932 * 300.00295 * 22 20 19 26 26 C 1.38129 * 120.05716 * 0.04353 * 19 18 17 27 27 H 1.09002 * 109.46890 * 299.99335 * 1 2 3 28 28 H 1.08992 * 109.47687 * 59.99898 * 1 2 3 29 29 H 1.09008 * 109.46918 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47540 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47652 * 300.00492 * 3 2 1 32 32 H 1.08999 * 109.47147 * 60.00225 * 3 2 1 33 33 H 1.09003 * 109.47630 * 299.99491 * 4 2 1 34 34 H 1.09001 * 109.47653 * 59.99873 * 4 2 1 35 35 H 1.09003 * 109.47083 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46881 * 180.02562 * 6 5 2 37 37 H 1.09003 * 109.47202 * 299.99771 * 6 5 2 38 38 H 1.08993 * 109.47351 * 60.00236 * 6 5 2 39 39 H 1.08999 * 109.47329 * 300.00132 * 7 5 2 40 40 H 1.09003 * 109.46602 * 60.00623 * 7 5 2 41 41 H 1.09001 * 109.46854 * 179.97438 * 7 5 2 42 42 H 1.09003 * 109.47197 * 60.00339 * 9 8 5 43 43 H 1.09003 * 109.47212 * 300.00243 * 9 8 5 44 44 H 1.08999 * 109.47215 * 305.00426 * 10 9 8 45 45 H 1.08998 * 109.47516 * 185.00326 * 10 9 8 46 46 H 1.09001 * 109.46993 * 59.99365 * 12 11 10 47 47 H 1.09004 * 109.46505 * 300.00140 * 12 11 10 48 48 H 1.09002 * 109.47153 * 304.99576 * 13 12 11 49 49 H 1.09001 * 109.46832 * 184.99767 * 13 12 11 50 50 H 1.08006 * 120.02494 * 359.97438 * 16 15 14 51 51 H 1.08006 * 119.97038 * 180.27439 * 17 16 15 52 52 H 1.08000 * 119.94133 * 179.70045 * 18 17 16 53 53 H 1.09005 * 109.47122 * 125.02014 * 20 19 18 54 54 H 0.96696 * 113.99487 * 59.99932 * 21 20 19 55 55 H 1.07998 * 120.02418 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5211 6 6 1.5301 0.0000 3.0422 7 6 4.0141 -0.8788 1.5206 8 8 1.6074 -2.4160 1.5211 9 6 2.0296 -3.1817 2.6513 10 6 1.4647 -4.5998 2.5464 11 8 2.0331 -5.2561 1.4115 12 6 1.5692 -6.5943 1.2211 13 6 2.2407 -7.1959 -0.0150 14 8 3.6461 -7.3123 0.2155 15 6 4.3955 -7.8333 -0.7915 16 6 3.7898 -8.2295 -1.9748 17 6 4.5547 -8.7535 -2.9991 18 6 5.9209 -8.8939 -2.8411 19 6 6.5263 -8.5045 -1.6605 20 6 8.0159 -8.6584 -1.4918 21 8 8.2826 -9.6093 -0.4589 22 14 8.7639 -9.2527 -3.0913 23 1 8.4867 -8.2645 -4.1646 24 1 10.2318 -9.4038 -2.9252 25 1 8.1693 -10.5628 -3.4590 26 6 5.7669 -7.9748 -0.6355 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.8938 -0.5137 3.9322 37 1 1.8934 1.0276 3.0423 38 1 0.4401 -0.0001 3.0423 39 1 4.3771 -1.3929 0.6306 40 1 4.3777 0.1487 1.5205 41 1 4.3774 -1.3923 2.4108 42 1 1.6654 -2.7119 3.5650 43 1 3.1185 -3.2255 2.6743 44 1 0.3816 -4.5521 2.4337 45 1 1.7118 -5.1571 3.4499 46 1 0.4882 -6.5875 1.0808 47 1 1.8181 -7.1932 2.0971 48 1 2.0658 -6.5489 -0.8747 49 1 1.8218 -8.1828 -0.2119 50 1 2.7218 -8.1247 -2.0967 51 1 4.0841 -9.0581 -3.9224 52 1 6.5163 -9.3082 -3.6413 53 1 8.4523 -7.6967 -1.2219 54 1 7.9226 -10.4898 -0.6325 55 1 6.2404 -7.6704 0.2862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:26:44 Heat of formation + Delta-G solvation = -187.185299 kcal Electronic energy + Delta-G solvation = -29988.014975 eV Core-core repulsion = 25920.937429 eV Total energy + Delta-G solvation = -4067.077546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.26802 -39.51589 -38.83992 -37.49339 -37.12345 -36.82971 -32.51301 -32.35562 -30.79275 -29.61650 -29.16854 -29.06697 -27.84172 -27.38763 -26.88368 -24.15970 -23.68129 -23.45525 -21.90194 -20.41980 -19.26633 -18.14549 -18.04191 -17.90971 -17.37273 -16.99897 -16.59613 -16.35014 -16.14044 -16.06788 -15.72221 -15.50587 -15.36878 -14.95906 -14.85371 -14.78003 -14.58756 -14.35451 -14.09148 -13.95410 -13.58579 -13.47270 -13.38355 -13.19785 -13.16572 -12.96344 -12.93112 -12.83029 -12.78707 -12.50879 -12.40896 -12.29361 -12.13482 -11.95964 -11.87773 -11.77531 -11.68278 -11.53095 -11.47792 -11.19250 -10.56966 -10.45639 -10.30352 -10.05215 -9.93280 -9.24525 0.20619 0.39337 1.16355 1.47341 1.54324 1.54650 1.79875 1.90598 2.13531 2.19578 2.49377 2.66214 2.69689 3.52323 3.68757 3.78969 3.94898 4.05534 4.09357 4.11593 4.12195 4.13886 4.21202 4.23272 4.30753 4.36989 4.43623 4.47314 4.48992 4.56400 4.59189 4.63696 4.71098 4.73714 4.75835 4.78255 4.79346 4.81115 4.82991 4.83516 4.98509 4.99164 5.08436 5.08902 5.19814 5.26081 5.33138 5.36408 5.40169 5.42828 5.43646 5.52632 5.58514 5.63655 5.71856 6.26451 6.42513 6.69063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.311 2.689 6 C -0.513 4.513 7 C -0.520 4.520 8 O -0.635 6.635 9 C 0.075 3.925 10 C 0.053 3.947 11 O -0.401 6.401 12 C 0.059 3.941 13 C 0.055 3.945 14 O -0.326 6.326 15 C 0.118 3.882 16 C -0.210 4.210 17 C -0.075 4.075 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.087 4.087 21 O -0.553 6.553 22 Si 0.994 3.006 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.246 1.246 26 C -0.144 4.144 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.147 0.853 51 H 0.153 0.847 52 H 0.136 0.864 53 H 0.120 0.880 54 H 0.389 0.611 55 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -1.343 0.500 3.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.595 6.595 9 C 0.000 4.000 10 C -0.023 4.023 11 O -0.321 6.321 12 C -0.018 4.018 13 C -0.019 4.019 14 O -0.240 6.240 15 C 0.073 3.927 16 C -0.229 4.229 17 C -0.093 4.093 18 C -0.192 4.192 19 C -0.084 4.084 20 C -0.196 4.196 21 O -0.360 6.360 22 Si 0.818 3.182 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.170 1.170 26 C -0.163 4.163 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.165 0.835 51 H 0.171 0.829 52 H 0.153 0.847 53 H 0.138 0.862 54 H 0.238 0.762 55 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.758 -1.152 -0.082 2.990 hybrid contribution -0.505 0.163 0.260 0.591 sum -3.263 -0.989 0.178 3.414 Atomic orbital electron populations 1.21524 0.93994 1.01725 1.01958 1.25886 1.00593 1.02972 1.12924 1.21598 1.01134 0.94650 1.02350 1.21514 1.00720 0.99895 0.97107 0.76287 0.62041 0.53019 0.64522 1.27026 1.07024 1.09763 1.17710 1.27162 1.26177 1.04669 1.04082 1.85382 1.79207 1.46519 1.48393 1.22302 0.99257 0.90736 0.87743 1.22834 0.98443 0.92108 0.88893 1.87990 1.68589 1.26800 1.48675 1.22691 0.98485 0.83370 0.97218 1.23103 0.78088 1.01647 0.99078 1.86118 1.21052 1.77992 1.38875 1.19240 0.91410 0.93983 0.88073 1.21555 1.01747 1.05721 0.93832 1.21234 0.93302 0.95766 0.98953 1.21191 0.96077 1.04271 0.97670 1.20226 0.96534 0.97972 0.93670 1.25186 0.93260 0.97689 1.03481 1.86491 1.79865 1.24046 1.45566 0.85052 0.78257 0.80720 0.74203 1.18114 1.20125 1.17001 1.20338 0.90905 1.04423 1.00660 0.91815 0.93294 0.92646 0.92107 0.93049 0.91540 0.92912 0.93174 0.92633 0.90811 0.90333 0.90777 0.91980 0.90409 0.91334 0.88776 0.92071 0.91479 0.90359 0.88811 0.91702 0.91065 0.88215 0.83487 0.82937 0.84694 0.86230 0.76168 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.16 7.85 71.98 0.56 0.40 16 2 C -0.38 -0.43 0.53 -10.79 -0.01 -0.43 16 3 C -0.14 0.01 7.85 71.98 0.56 0.58 16 4 C -0.14 -0.42 7.85 71.98 0.56 0.14 16 5 Si 1.31 -0.68 8.45 68.60 0.58 -0.10 16 6 C -0.51 0.98 8.50 113.37 0.96 1.94 16 7 C -0.52 -0.76 8.50 113.37 0.96 0.21 16 8 O -0.64 -1.80 8.52 -144.34 -1.23 -3.03 16 9 C 0.07 -0.02 5.50 71.98 0.40 0.37 16 10 C 0.05 -0.02 6.32 71.98 0.45 0.44 16 11 O -0.40 -2.06 10.27 -135.05 -1.39 -3.45 16 12 C 0.06 -0.03 6.32 71.98 0.45 0.42 16 13 C 0.06 0.02 5.12 71.98 0.37 0.39 16 14 O -0.33 -2.36 10.10 -87.80 -0.89 -3.25 16 15 C 0.12 0.77 6.69 22.50 0.15 0.92 16 16 C -0.21 -0.48 9.04 22.36 0.20 -0.28 16 17 C -0.07 -0.05 10.04 22.25 0.22 0.18 16 18 C -0.17 -0.30 8.67 22.28 0.19 -0.10 16 19 C -0.08 -0.31 5.35 -19.88 -0.11 -0.42 16 20 C -0.09 -0.12 2.80 71.23 0.20 0.08 16 21 O -0.55 -1.47 12.83 -148.98 -1.91 -3.38 16 22 Si 0.99 -0.50 25.14 68.60 1.72 1.22 16 23 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 24 H -0.28 -0.79 7.11 99.48 0.71 -0.09 16 25 H -0.25 0.37 7.04 99.48 0.70 1.07 16 26 C -0.14 -1.00 9.62 22.37 0.22 -0.79 16 27 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 28 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.05 0.11 7.97 -2.38 -0.02 0.09 16 30 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 31 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 33 H 0.05 0.24 7.97 -2.39 -0.02 0.22 16 34 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.05 0.14 7.79 -2.39 -0.02 0.12 16 36 H 0.07 -0.23 7.48 -2.39 -0.02 -0.25 16 37 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 38 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 39 H 0.06 0.23 7.79 -2.39 -0.02 0.21 16 40 H 0.08 0.01 7.79 -2.39 -0.02 -0.01 16 41 H 0.07 0.06 7.48 -2.39 -0.02 0.04 16 42 H 0.09 -0.55 7.22 -2.39 -0.02 -0.57 16 43 H 0.06 -0.01 7.21 -2.39 -0.02 -0.02 16 44 H 0.07 -0.15 8.14 -2.39 -0.02 -0.16 16 45 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.07 0.03 7.68 -2.39 -0.02 0.01 16 49 H 0.10 -0.47 7.65 -2.39 -0.02 -0.49 16 50 H 0.15 -0.33 6.30 -2.91 -0.02 -0.35 16 51 H 0.15 -0.72 8.06 -2.91 -0.02 -0.75 16 52 H 0.14 -0.23 4.86 -2.91 -0.01 -0.24 16 53 H 0.12 0.06 7.96 -2.38 -0.02 0.04 16 54 H 0.39 -1.62 8.70 -74.06 -0.64 -2.26 16 55 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -15.42 437.01 4.20 -11.23 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: 0.94 Total: -3.30 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.37 Total: 4.06 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -5.42 Total: -13.11 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.30 Total: 1.12 kcal Total: -15.42 4.20 -11.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.958 kcal (2) G-P(sol) polarization free energy of solvation -15.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds