Wall clock time and date at job start Mon Mar 8 2021 08:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99823 * 2 1 4 4 C 1.52997 * 112.85232 * 294.01500 * 3 2 1 5 5 F 1.39892 * 109.47197 * 195.95016 * 4 3 2 6 6 F 1.39901 * 109.46808 * 315.94968 * 4 3 2 7 7 F 1.39902 * 109.47387 * 75.94652 * 4 3 2 8 8 C 1.54049 * 113.68649 * 162.73690 * 3 2 1 9 9 C 1.53781 * 86.98892 * 270.87491 * 8 3 2 10 10 H 1.08998 * 113.61458 * 219.98220 * 9 8 3 11 11 C 1.53000 * 113.61232 * 89.15973 * 9 8 3 12 12 O 1.42901 * 109.46778 * 85.86745 * 11 9 8 13 13 C 1.35901 * 116.99734 * 179.97438 * 12 11 9 14 14 C 1.38717 * 120.05399 * 180.25149 * 13 12 11 15 15 C 1.38164 * 119.94353 * 180.25942 * 14 13 12 16 16 C 1.50695 * 119.97432 * 179.74808 * 15 14 13 17 17 O 1.42898 * 109.46927 * 299.72150 * 16 15 14 18 18 Si 1.86302 * 109.47211 * 179.72119 * 16 15 14 19 19 C 1.38248 * 120.05595 * 359.46938 * 15 14 13 20 20 C 1.38290 * 120.11119 * 0.27752 * 19 15 14 21 21 C 1.38123 * 120.05182 * 359.97438 * 20 19 15 22 22 C 1.53784 * 87.17220 * 334.57246 * 9 8 3 23 23 H 1.09002 * 109.47101 * 184.82583 * 1 2 3 24 24 H 1.08993 * 109.47249 * 304.83252 * 1 2 3 25 25 H 1.09009 * 109.46762 * 64.82942 * 1 2 3 26 26 H 1.08999 * 113.61189 * 156.37269 * 8 3 2 27 27 H 1.08998 * 113.69744 * 25.39493 * 8 3 2 28 28 H 1.08996 * 109.47291 * 325.86379 * 11 9 8 29 29 H 1.09004 * 109.47012 * 205.86382 * 11 9 8 30 30 H 1.08001 * 120.03075 * 359.97438 * 14 13 12 31 31 H 1.08995 * 109.47179 * 59.72096 * 16 15 14 32 32 H 0.96707 * 114.00338 * 180.02562 * 17 16 15 33 33 H 1.48501 * 110.00061 * 60.00310 * 18 16 15 34 34 H 1.48503 * 109.99919 * 181.31513 * 18 16 15 35 35 H 1.07997 * 119.94761 * 180.26090 * 19 15 14 36 36 H 1.07994 * 119.97508 * 179.97438 * 20 19 15 37 37 H 1.08007 * 120.02439 * 179.97438 * 21 20 19 38 38 H 1.08996 * 113.61254 * 140.02260 * 22 9 8 39 39 H 1.08997 * 113.61274 * 270.92839 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7277 2.0817 -1.2878 5 9 2.6024 3.1697 -1.3780 6 9 1.9147 1.2404 -2.3899 7 9 0.4076 2.5446 -1.2733 8 6 3.4927 1.3230 0.4186 9 6 2.9981 1.4841 1.8658 10 1 3.5936 2.1809 2.4557 11 6 2.7566 0.1541 2.5826 12 8 3.9805 -0.3048 3.1601 13 6 3.9394 -1.4816 3.8386 14 6 5.0898 -1.9836 4.4290 15 6 5.0466 -3.1829 5.1137 16 6 6.2973 -3.7318 5.7505 17 8 7.2881 -3.9495 4.7441 18 14 5.9067 -5.3449 6.5969 19 6 3.8558 -3.8771 5.2199 20 6 2.7063 -3.3761 4.6366 21 6 2.7455 -2.1802 3.9467 22 6 1.7210 2.1085 1.2793 23 1 -0.3633 -1.0240 0.0865 24 1 -0.3633 0.5869 0.8435 25 1 -0.3633 0.4371 -0.9302 26 1 4.0414 2.1879 0.0460 27 1 4.0104 0.3813 0.2364 28 1 2.3933 -0.5835 1.8671 29 1 2.0142 0.2945 3.3683 30 1 6.0196 -1.4398 4.3497 31 1 6.6746 -3.0189 6.4836 32 1 8.1218 -4.3035 5.0830 33 1 5.3914 -6.3255 5.6079 34 1 7.1249 -5.8806 7.2559 35 1 3.8231 -4.8123 5.7591 36 1 1.7773 -3.9204 4.7206 37 1 1.8476 -1.7895 3.4910 38 1 0.8095 1.8006 1.7914 39 1 1.7863 3.1878 1.1413 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:17 Heat of formation + Delta-G solvation = -198.296594 kcal Electronic energy + Delta-G solvation = -27592.489977 eV Core-core repulsion = 23053.844312 eV Total energy + Delta-G solvation = -4538.645665 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.17405 -48.72186 -48.60641 -41.78756 -40.87412 -38.94782 -37.49869 -37.01996 -32.53788 -31.69734 -30.15257 -28.34189 -27.49070 -26.90595 -26.56432 -23.65043 -23.45515 -22.01781 -20.63089 -19.81350 -19.47108 -19.21128 -18.80686 -18.50611 -17.41330 -17.23597 -17.16446 -16.72466 -16.57896 -15.94458 -15.75904 -15.70836 -15.54215 -15.50146 -15.12178 -15.03673 -14.80725 -14.75769 -14.50967 -14.35999 -14.10051 -13.99775 -13.69175 -13.43760 -13.29355 -13.19251 -12.88215 -12.50224 -12.43057 -12.15653 -11.89956 -11.83756 -11.75298 -11.59305 -10.89480 -10.54471 -9.82085 -9.15525 -4.95474 0.28337 0.49296 1.27298 1.54205 1.60530 1.94114 1.96721 2.06596 2.52672 2.61312 2.70026 2.83901 3.22775 3.32594 3.35198 3.45405 3.60870 3.82496 3.88742 4.01703 4.07794 4.13453 4.14826 4.23514 4.24679 4.29822 4.31664 4.34906 4.46092 4.54438 4.57726 4.63021 4.68256 4.72688 4.89781 5.04611 5.32714 5.44107 5.53640 5.58571 5.74629 6.43876 6.45471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.332 6.332 3 C 0.038 3.962 4 C 0.437 3.563 5 F -0.175 7.175 6 F -0.174 7.174 7 F -0.182 7.182 8 C -0.112 4.112 9 C -0.098 4.098 10 H 0.106 0.894 11 C 0.069 3.931 12 O -0.311 6.311 13 C 0.133 3.867 14 C -0.125 4.125 15 C -0.035 4.035 16 C -0.078 4.078 17 O -0.535 6.535 18 Si 0.686 3.314 19 C -0.153 4.153 20 C -0.073 4.073 21 C -0.204 4.204 22 C -0.142 4.142 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.380 0.620 33 H -0.255 1.255 34 H -0.261 1.261 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 0.579 4.625 5.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.250 6.250 3 C -0.004 4.004 4 C 0.382 3.618 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.149 4.149 9 C -0.117 4.117 10 H 0.124 0.876 11 C -0.006 4.006 12 O -0.225 6.225 13 C 0.088 3.912 14 C -0.143 4.143 15 C -0.035 4.035 16 C -0.187 4.187 17 O -0.342 6.342 18 Si 0.587 3.413 19 C -0.171 4.171 20 C -0.091 4.091 21 C -0.222 4.222 22 C -0.180 4.180 23 H 0.120 0.880 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.228 0.772 33 H -0.179 1.179 34 H -0.187 1.187 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.587 -0.072 4.212 4.943 hybrid contribution 0.521 0.397 -0.936 1.143 sum -2.066 0.325 3.275 3.886 Atomic orbital electron populations 1.23152 0.79505 1.04343 1.01629 1.88095 1.21113 1.21931 1.93835 1.24110 1.00115 0.86284 0.89901 1.21172 0.74293 0.78723 0.87581 1.93179 1.69305 1.56513 1.96599 1.93223 1.94801 1.70820 1.56678 1.93192 1.36643 1.89653 1.96848 1.23310 0.90792 1.05825 0.94945 1.22072 0.97418 0.96539 0.95637 0.87555 1.22738 0.85332 0.95472 0.97009 1.86028 1.34788 1.35262 1.66420 1.18944 0.94053 0.85636 0.92571 1.20217 0.97052 0.96738 1.00327 1.19012 0.93217 0.93788 0.97480 1.24839 0.89505 1.09893 0.94477 1.86600 1.26145 1.86683 1.34762 0.95000 0.85781 0.76173 0.84383 1.20849 0.92719 1.00475 1.03070 1.20878 0.98195 0.94721 0.95307 1.21301 0.97373 0.98065 1.05504 1.23590 0.99583 1.01147 0.93670 0.87967 0.92591 0.92774 0.86522 0.88219 0.89786 0.91509 0.84989 0.90360 0.77178 1.17918 1.18673 0.85411 0.85144 0.85276 0.88696 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.30 101.05 1.04 1.02 16 2 O -0.33 -0.04 8.35 -35.23 -0.29 -0.34 16 3 C 0.04 -0.02 0.85 -89.67 -0.08 -0.10 16 4 C 0.44 0.49 2.52 37.16 0.09 0.58 16 5 F -0.17 -0.22 15.81 2.25 0.04 -0.18 16 6 F -0.17 -0.52 17.10 2.25 0.04 -0.48 16 7 F -0.18 -0.23 15.40 2.25 0.03 -0.20 16 8 C -0.11 0.11 6.92 -25.78 -0.18 -0.07 16 9 C -0.10 0.17 4.19 -89.81 -0.38 -0.20 16 10 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 11 C 0.07 -0.05 4.34 37.16 0.16 0.11 16 12 O -0.31 -0.62 10.14 -19.43 -0.20 -0.82 16 13 C 0.13 0.32 6.69 -39.22 -0.26 0.06 16 14 C -0.12 -0.35 9.56 -39.43 -0.38 -0.72 16 15 C -0.03 -0.07 5.42 -104.65 -0.57 -0.63 16 16 C -0.08 -0.03 2.81 36.00 0.10 0.07 16 17 O -0.53 -0.91 12.75 -35.23 -0.45 -1.36 16 18 Si 0.69 -0.48 29.79 -169.99 -5.06 -5.55 16 19 C -0.15 -0.13 8.67 -39.56 -0.34 -0.47 16 20 C -0.07 -0.02 10.04 -39.60 -0.40 -0.42 16 21 C -0.20 -0.18 9.04 -39.43 -0.36 -0.54 16 22 C -0.14 0.36 6.51 -25.91 -0.17 0.19 16 23 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 24 H 0.06 -0.18 6.55 -51.93 -0.34 -0.52 16 25 H 0.05 -0.06 6.69 -51.92 -0.35 -0.40 16 26 H 0.12 -0.22 7.02 -51.93 -0.36 -0.59 16 27 H 0.10 -0.01 8.10 -51.93 -0.42 -0.43 16 28 H 0.08 -0.02 5.61 -51.93 -0.29 -0.32 16 29 H 0.07 -0.13 7.66 -51.93 -0.40 -0.53 16 30 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 31 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.38 -0.92 8.74 45.56 0.40 -0.53 16 33 H -0.25 -0.64 7.11 56.52 0.40 -0.23 16 34 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 35 H 0.13 -0.13 4.87 -52.49 -0.26 -0.39 16 36 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 37 H 0.13 -0.13 6.30 -52.48 -0.33 -0.46 16 38 H 0.09 -0.34 6.63 -51.93 -0.34 -0.68 16 39 H 0.11 -0.37 8.05 -51.93 -0.42 -0.79 16 LS Contribution 327.96 15.07 4.94 4.94 Total: 0.00 -6.49 327.96 -7.07 -13.56 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: -4.41 Total: -8.47 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.71 Total: -1.12 kcal Atomic # 8 Polarization: -1.57 SS G_CDS: -0.94 Total: -2.51 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.11 Total: -0.86 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.06 Total: -5.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -6.49 -7.07 -13.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.736 kcal (2) G-P(sol) polarization free energy of solvation -6.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds