Wall clock time and date at job start Mon Mar 8 2021 08:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99823 * 2 1 4 4 C 1.52997 * 112.85232 * 294.01500 * 3 2 1 5 5 F 1.39892 * 109.47197 * 195.95016 * 4 3 2 6 6 F 1.39901 * 109.46808 * 315.94968 * 4 3 2 7 7 F 1.39902 * 109.47387 * 75.94652 * 4 3 2 8 8 C 1.54049 * 113.68649 * 162.73690 * 3 2 1 9 9 C 1.53781 * 86.98892 * 270.87491 * 8 3 2 10 10 H 1.08998 * 113.61458 * 219.98220 * 9 8 3 11 11 C 1.53000 * 113.61232 * 89.15973 * 9 8 3 12 12 O 1.42901 * 109.46778 * 85.86745 * 11 9 8 13 13 C 1.35901 * 116.99734 * 179.97438 * 12 11 9 14 14 C 1.38717 * 120.05399 * 180.25149 * 13 12 11 15 15 C 1.38164 * 119.94353 * 180.25942 * 14 13 12 16 16 C 1.50695 * 119.97432 * 179.74808 * 15 14 13 17 17 O 1.42898 * 109.46927 * 299.72150 * 16 15 14 18 18 Si 1.86302 * 109.47211 * 179.72119 * 16 15 14 19 19 C 1.38248 * 120.05595 * 359.46938 * 15 14 13 20 20 C 1.38290 * 120.11119 * 0.27752 * 19 15 14 21 21 C 1.38123 * 120.05182 * 359.97438 * 20 19 15 22 22 C 1.53784 * 87.17220 * 334.57246 * 9 8 3 23 23 H 1.09002 * 109.47101 * 184.82583 * 1 2 3 24 24 H 1.08993 * 109.47249 * 304.83252 * 1 2 3 25 25 H 1.09009 * 109.46762 * 64.82942 * 1 2 3 26 26 H 1.08999 * 113.61189 * 156.37269 * 8 3 2 27 27 H 1.08998 * 113.69744 * 25.39493 * 8 3 2 28 28 H 1.08996 * 109.47291 * 325.86379 * 11 9 8 29 29 H 1.09004 * 109.47012 * 205.86382 * 11 9 8 30 30 H 1.08001 * 120.03075 * 359.97438 * 14 13 12 31 31 H 1.08995 * 109.47179 * 59.72096 * 16 15 14 32 32 H 0.96707 * 114.00338 * 180.02562 * 17 16 15 33 33 H 1.48501 * 110.00061 * 60.00310 * 18 16 15 34 34 H 1.48503 * 109.99919 * 181.31513 * 18 16 15 35 35 H 1.07997 * 119.94761 * 180.26090 * 19 15 14 36 36 H 1.07994 * 119.97508 * 179.97438 * 20 19 15 37 37 H 1.08007 * 120.02439 * 179.97438 * 21 20 19 38 38 H 1.08996 * 113.61254 * 140.02260 * 22 9 8 39 39 H 1.08997 * 113.61274 * 270.92839 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7277 2.0817 -1.2878 5 9 2.6024 3.1697 -1.3780 6 9 1.9147 1.2404 -2.3899 7 9 0.4076 2.5446 -1.2733 8 6 3.4927 1.3230 0.4186 9 6 2.9981 1.4841 1.8658 10 1 3.5936 2.1809 2.4557 11 6 2.7566 0.1541 2.5826 12 8 3.9805 -0.3048 3.1601 13 6 3.9394 -1.4816 3.8386 14 6 5.0898 -1.9836 4.4290 15 6 5.0466 -3.1829 5.1137 16 6 6.2973 -3.7318 5.7505 17 8 7.2881 -3.9495 4.7441 18 14 5.9067 -5.3449 6.5969 19 6 3.8558 -3.8771 5.2199 20 6 2.7063 -3.3761 4.6366 21 6 2.7455 -2.1802 3.9467 22 6 1.7210 2.1085 1.2793 23 1 -0.3633 -1.0240 0.0865 24 1 -0.3633 0.5869 0.8435 25 1 -0.3633 0.4371 -0.9302 26 1 4.0414 2.1879 0.0460 27 1 4.0104 0.3813 0.2364 28 1 2.3933 -0.5835 1.8671 29 1 2.0142 0.2945 3.3683 30 1 6.0196 -1.4398 4.3497 31 1 6.6746 -3.0189 6.4836 32 1 8.1218 -4.3035 5.0830 33 1 5.3914 -6.3255 5.6079 34 1 7.1249 -5.8806 7.2559 35 1 3.8231 -4.8123 5.7591 36 1 1.7773 -3.9204 4.7206 37 1 1.8476 -1.7895 3.4910 38 1 0.8095 1.8006 1.7914 39 1 1.7863 3.1878 1.1413 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:16 Heat of formation + Delta-G solvation = -194.497827 kcal Electronic energy + Delta-G solvation = -27592.325250 eV Core-core repulsion = 23053.844312 eV Total energy + Delta-G solvation = -4538.480938 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.27332 -48.80643 -48.74721 -41.72615 -40.87214 -38.97478 -37.51199 -36.96614 -32.57490 -31.70630 -30.14083 -28.19151 -27.49066 -26.76581 -26.58391 -23.65990 -23.46757 -22.03227 -20.57250 -19.83126 -19.56502 -19.22266 -18.83537 -18.55859 -17.34491 -17.23489 -17.18235 -16.72524 -16.47897 -15.92680 -15.76492 -15.67719 -15.64353 -15.58909 -15.20000 -15.07653 -14.92572 -14.84547 -14.52860 -14.34903 -14.10640 -14.00118 -13.69612 -13.36352 -13.22955 -13.13004 -12.77324 -12.46588 -12.38546 -12.12578 -11.89995 -11.78158 -11.71153 -11.55530 -10.81585 -10.56526 -9.87167 -9.21846 -4.91424 0.22925 0.42749 1.29141 1.51579 1.61816 1.94581 2.05298 2.10841 2.55017 2.61483 2.65927 2.87944 3.29743 3.35932 3.39656 3.48612 3.67962 3.84470 3.89272 4.12405 4.22569 4.23847 4.26425 4.28621 4.33196 4.37567 4.45345 4.49383 4.55687 4.63771 4.69317 4.71072 4.79816 4.82393 4.99215 5.04345 5.28236 5.40114 5.48333 5.70850 5.73967 6.42216 6.57671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.346 6.346 3 C 0.036 3.964 4 C 0.432 3.568 5 F -0.177 7.177 6 F -0.189 7.189 7 F -0.183 7.183 8 C -0.116 4.116 9 C -0.094 4.094 10 H 0.113 0.887 11 C 0.067 3.933 12 O -0.327 6.327 13 C 0.119 3.881 14 C -0.148 4.148 15 C -0.048 4.048 16 C -0.092 4.092 17 O -0.560 6.560 18 Si 0.775 3.225 19 C -0.163 4.163 20 C -0.074 4.074 21 C -0.208 4.208 22 C -0.131 4.131 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.395 0.605 33 H -0.298 1.298 34 H -0.286 1.286 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 0.650 5.687 6.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.264 6.264 3 C -0.006 4.006 4 C 0.378 3.622 5 F -0.158 7.158 6 F -0.171 7.171 7 F -0.165 7.165 8 C -0.153 4.153 9 C -0.112 4.112 10 H 0.131 0.869 11 C -0.007 4.007 12 O -0.242 6.242 13 C 0.074 3.926 14 C -0.167 4.167 15 C -0.048 4.048 16 C -0.200 4.200 17 O -0.370 6.370 18 Si 0.679 3.321 19 C -0.180 4.180 20 C -0.092 4.092 21 C -0.226 4.226 22 C -0.168 4.168 23 H 0.132 0.868 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.246 0.754 33 H -0.226 1.226 34 H -0.213 1.213 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.128 0.872 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.663 0.025 5.281 6.427 hybrid contribution 0.872 0.364 -1.330 1.631 sum -2.791 0.389 3.951 4.853 Atomic orbital electron populations 1.23304 0.78617 1.05421 1.01824 1.88083 1.22179 1.22331 1.93833 1.24229 1.00364 0.86353 0.89655 1.21534 0.74162 0.78699 0.87842 1.93169 1.69368 1.56647 1.96631 1.93186 1.94892 1.71309 1.57679 1.93184 1.36759 1.89683 1.96851 1.23373 0.90724 1.05403 0.95828 1.22040 0.97970 0.96265 0.94940 0.86913 1.22879 0.84855 0.95684 0.97330 1.86004 1.36323 1.35283 1.66556 1.19130 0.94558 0.86065 0.92875 1.20311 0.97095 0.97559 1.01755 1.19282 0.94293 0.93692 0.97572 1.25151 0.89024 1.11411 0.94438 1.86555 1.27317 1.87055 1.36031 0.94023 0.83402 0.72969 0.81663 1.21125 0.92626 1.00996 1.03275 1.21258 0.99091 0.94518 0.94288 1.21554 0.97459 0.98191 1.05433 1.23615 0.99765 1.01431 0.91985 0.86814 0.90811 0.93858 0.85863 0.89656 0.90260 0.89924 0.86040 0.88765 0.75444 1.22556 1.21297 0.83803 0.82480 0.83474 0.87159 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.15 16 2 O -0.35 -0.13 8.35 -148.98 -1.24 -1.37 16 3 C 0.04 -0.04 0.85 -10.18 -0.01 -0.04 16 4 C 0.43 1.15 2.52 71.98 0.18 1.33 16 5 F -0.18 -0.50 15.81 44.97 0.71 0.21 16 6 F -0.19 -1.34 17.10 44.97 0.77 -0.57 16 7 F -0.18 -0.49 15.40 44.97 0.69 0.20 16 8 C -0.12 0.16 6.92 31.21 0.22 0.38 16 9 C -0.09 0.36 4.19 -10.27 -0.04 0.32 16 10 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C 0.07 -0.11 4.34 71.98 0.31 0.21 16 12 O -0.33 -1.58 10.14 -92.44 -0.94 -2.51 16 13 C 0.12 0.66 6.69 22.51 0.15 0.81 16 14 C -0.15 -1.04 9.56 22.37 0.21 -0.83 16 15 C -0.05 -0.22 5.42 -19.88 -0.11 -0.32 16 16 C -0.09 -0.11 2.81 71.23 0.20 0.09 16 17 O -0.56 -2.41 12.75 -148.98 -1.90 -4.31 16 18 Si 0.77 -1.20 29.79 68.60 2.04 0.84 16 19 C -0.16 -0.24 8.67 22.28 0.19 -0.04 16 20 C -0.07 0.02 10.04 22.25 0.22 0.24 16 21 C -0.21 -0.30 9.04 22.36 0.20 -0.10 16 22 C -0.13 0.80 6.51 31.12 0.20 1.00 16 23 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 24 H 0.07 -0.58 6.55 -2.39 -0.02 -0.60 16 25 H 0.04 -0.08 6.69 -2.38 -0.02 -0.09 16 26 H 0.12 -0.40 7.02 -2.39 -0.02 -0.41 16 27 H 0.08 0.13 8.10 -2.39 -0.02 0.11 16 28 H 0.08 -0.05 5.61 -2.39 -0.01 -0.06 16 29 H 0.08 -0.41 7.66 -2.38 -0.02 -0.43 16 30 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.09 -0.24 7.96 -2.39 -0.02 -0.26 16 32 H 0.40 -1.65 8.74 -74.05 -0.65 -2.30 16 33 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 34 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 35 H 0.14 -0.40 4.87 -2.91 -0.01 -0.42 16 36 H 0.16 -0.97 8.06 -2.91 -0.02 -0.99 16 37 H 0.15 -0.45 6.30 -2.91 -0.02 -0.47 16 38 H 0.11 -1.00 6.63 -2.39 -0.02 -1.01 16 39 H 0.12 -0.99 8.05 -2.39 -0.02 -1.01 16 Total: 0.00 -16.37 327.96 3.73 -12.63 By element: Atomic # 1 Polarization: -9.83 SS G_CDS: 0.49 Total: -9.33 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 3.10 Total: 4.20 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -4.08 Total: -8.19 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 2.17 Total: -0.16 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.04 Total: 0.84 kcal Total: -16.37 3.73 -12.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.865 kcal (2) G-P(sol) polarization free energy of solvation -16.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds