Wall clock time and date at job start Mon Mar 8 2021 08:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47368 * 240.00134 * 2 1 3 5 5 Si 1.86295 * 109.47220 * 119.99689 * 2 1 3 6 6 C 1.86304 * 109.47245 * 300.00268 * 5 2 1 7 7 C 1.86297 * 109.47269 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47255 * 59.99984 * 5 2 1 9 9 C 1.42895 * 114.00569 * 179.97438 * 8 5 2 10 10 C 1.52992 * 109.47606 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47482 * 180.02562 * 10 9 8 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38710 * 120.05544 * 359.72769 * 13 12 11 15 15 C 1.38159 * 119.94311 * 179.72143 * 14 13 12 16 16 C 1.38250 * 120.05742 * 0.57011 * 15 14 13 17 17 C 1.38280 * 120.10833 * 359.68104 * 16 15 14 18 18 C 1.50697 * 119.97205 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47393 * 245.02079 * 18 17 16 20 20 Si 1.86306 * 109.47148 * 5.02162 * 18 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 20 18 17 22 22 H 1.48491 * 109.46932 * 300.00295 * 20 18 17 23 23 H 1.48504 * 109.46673 * 59.99962 * 20 18 17 24 24 C 1.38129 * 120.05716 * 0.04353 * 17 16 15 25 25 H 1.08996 * 109.46872 * 299.99997 * 1 2 3 26 26 H 1.08998 * 109.46630 * 60.00026 * 1 2 3 27 27 H 1.08990 * 109.46784 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47000 * 299.99857 * 3 2 1 30 30 H 1.09006 * 109.46975 * 59.99731 * 3 2 1 31 31 H 1.09003 * 109.46636 * 299.99813 * 4 2 1 32 32 H 1.09003 * 109.47287 * 59.99830 * 4 2 1 33 33 H 1.08995 * 109.47220 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47218 * 179.97438 * 6 5 2 35 35 H 1.08994 * 109.46978 * 299.99632 * 6 5 2 36 36 H 1.08995 * 109.47083 * 59.99962 * 6 5 2 37 37 H 1.08996 * 109.47388 * 300.00308 * 7 5 2 38 38 H 1.09006 * 109.46801 * 60.00439 * 7 5 2 39 39 H 1.09003 * 109.47105 * 180.02562 * 7 5 2 40 40 H 1.09002 * 109.47063 * 60.00035 * 9 8 5 41 41 H 1.09001 * 109.46798 * 300.00303 * 9 8 5 42 42 H 1.09002 * 109.47103 * 59.99788 * 10 9 8 43 43 H 1.08998 * 109.46862 * 300.00600 * 10 9 8 44 44 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 45 45 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 46 46 H 1.08006 * 120.02494 * 359.97438 * 14 13 12 47 47 H 1.08006 * 119.97038 * 180.27439 * 15 14 13 48 48 H 1.08000 * 119.94133 * 179.70045 * 16 15 14 49 49 H 1.09005 * 109.47122 * 125.02014 * 18 17 16 50 50 H 0.96703 * 113.99614 * 179.97438 * 19 18 17 51 51 H 1.07998 * 120.02418 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1510 -0.8781 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8788 1.5208 8 8 1.6074 -2.4159 1.5213 9 6 2.0295 -3.1816 2.6515 10 6 1.4646 -4.5996 2.5467 11 6 1.9161 -5.4192 3.7571 12 8 1.3890 -6.7438 3.6589 13 6 1.6987 -7.6071 4.6618 14 6 2.4981 -7.1896 5.7156 15 6 2.8068 -8.0674 6.7369 16 6 2.3294 -9.3644 6.7031 17 6 1.5365 -9.7846 5.6509 18 6 1.0173 -11.1989 5.6175 19 8 1.5868 -11.8892 4.5034 20 14 1.4882 -12.0708 7.1951 21 1 0.9760 -13.4642 7.1625 22 1 2.9671 -12.0894 7.3279 23 1 0.8962 -11.3533 8.3528 24 6 1.2204 -8.9091 4.6303 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.8930 -0.5139 3.9323 35 1 1.8933 1.0277 3.0423 36 1 0.4401 0.0001 3.0423 37 1 4.3770 -1.3929 0.6308 38 1 4.3777 0.1488 1.5205 39 1 4.3773 -1.3930 2.4106 40 1 1.6654 -2.7117 3.5652 41 1 3.1184 -3.2254 2.6745 42 1 1.8291 -5.0692 1.6330 43 1 0.3758 -4.5561 2.5233 44 1 1.5513 -4.9494 4.6706 45 1 3.0050 -5.4627 3.7808 46 1 2.8756 -6.1779 5.7399 47 1 3.4256 -7.7415 7.5599 48 1 2.5758 -10.0505 7.4999 49 1 -0.0683 -11.1852 5.5200 50 1 1.2965 -12.8079 4.4198 51 1 0.6008 -9.2377 3.8091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34819_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:58:16 Heat of formation + Delta-G solvation = -155.106724 kcal Electronic energy + Delta-G solvation = -25304.805338 eV Core-core repulsion = 21713.338634 eV Total energy + Delta-G solvation = -3591.466704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19570 -39.18140 -38.22225 -37.28336 -36.86326 -33.66026 -32.53454 -30.93185 -29.47423 -29.13138 -27.89375 -27.41523 -27.20379 -26.25924 -23.64685 -22.90923 -21.74282 -20.44895 -18.88293 -18.47997 -17.90524 -17.49734 -17.38270 -16.85902 -16.16316 -16.03438 -15.85812 -15.60514 -15.29732 -14.90287 -14.83450 -14.71939 -14.44145 -14.21075 -14.11275 -13.97416 -13.60555 -13.48661 -13.39495 -13.29294 -13.10023 -12.96831 -12.95719 -12.89622 -12.64899 -12.42946 -12.32526 -12.05619 -11.92274 -11.86678 -11.73545 -11.70312 -11.60488 -11.44834 -11.36987 -10.41182 -10.38728 -10.10707 -9.83438 -9.16344 0.27587 0.48410 1.12427 1.32265 1.43940 1.50203 1.69896 1.89570 2.00742 2.15439 2.47425 2.70479 3.41215 3.75680 3.79000 3.86093 3.96950 4.00075 4.06625 4.09268 4.09775 4.19885 4.23279 4.26031 4.30334 4.34679 4.44574 4.56577 4.62143 4.65477 4.67845 4.68361 4.68933 4.78562 4.83254 4.97511 4.98764 5.00484 5.04841 5.08162 5.08346 5.17557 5.31310 5.32345 5.38947 5.39392 5.43045 5.48119 5.50840 5.52508 5.55790 5.74778 6.45707 6.57539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.124 4.124 11 C 0.058 3.942 12 O -0.311 6.311 13 C 0.132 3.868 14 C -0.205 4.205 15 C -0.073 4.073 16 C -0.162 4.162 17 C -0.037 4.037 18 C -0.084 4.084 19 O -0.543 6.543 20 Si 0.951 3.049 21 H -0.257 1.257 22 H -0.248 1.248 23 H -0.249 1.249 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.122 0.878 49 H 0.078 0.922 50 H 0.381 0.619 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 0.571 2.143 2.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.161 4.161 11 C -0.017 4.017 12 O -0.224 6.224 13 C 0.086 3.914 14 C -0.224 4.224 15 C -0.091 4.091 16 C -0.180 4.180 17 C -0.037 4.037 18 C -0.194 4.194 19 O -0.349 6.349 20 Si 0.773 3.227 21 H -0.181 1.181 22 H -0.171 1.171 23 H -0.173 1.173 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.140 0.860 49 H 0.096 0.904 50 H 0.228 0.772 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.379 0.521 2.499 2.580 hybrid contribution 0.024 0.389 -0.062 0.394 sum 0.403 0.909 2.437 2.632 Atomic orbital electron populations 1.21512 0.93784 1.02044 1.01801 1.25786 1.00721 1.02636 1.12720 1.21557 1.00769 0.94898 1.02161 1.21513 1.00602 1.00279 0.96755 0.76705 0.63010 0.53345 0.65019 1.27035 1.07059 1.09514 1.17706 1.27038 1.25048 1.04764 1.04480 1.85331 1.79313 1.46063 1.47532 1.21794 0.98106 0.91524 0.87147 1.21520 1.03375 0.93157 0.98059 1.22707 0.98646 0.80932 0.99416 1.86062 1.70974 1.21790 1.43613 1.18978 0.94620 0.90084 0.87691 1.21304 1.03517 1.01367 0.96226 1.20862 0.97853 0.92694 0.97655 1.20909 1.00554 0.97162 0.99367 1.19024 0.96868 0.93464 0.94328 1.24779 1.00184 0.93754 1.00675 1.86522 1.71439 1.28812 1.48125 0.85682 0.81690 0.79220 0.76072 1.18137 1.17107 1.17288 1.20232 1.03457 0.90305 1.00036 0.92709 0.92770 0.92128 0.92516 0.92479 0.92521 0.92122 0.92776 0.92700 0.91508 0.90674 0.90828 0.90819 0.90677 0.91506 0.92388 0.92386 0.89568 0.89594 0.91615 0.91622 0.85190 0.85215 0.86041 0.90363 0.77181 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 7.85 37.16 0.29 0.29 16 2 C -0.38 0.13 0.53 -90.62 -0.05 0.09 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.13 -0.01 7.85 37.15 0.29 0.28 16 5 Si 1.29 -1.64 8.45 -169.99 -1.44 -3.08 16 6 C -0.51 0.53 8.50 101.05 0.86 1.39 16 7 C -0.51 0.50 8.50 101.05 0.86 1.36 16 8 O -0.62 -0.04 8.56 -35.23 -0.30 -0.34 16 9 C 0.09 -0.12 5.12 37.15 0.19 0.07 16 10 C -0.12 0.08 5.95 -26.74 -0.16 -0.08 16 11 C 0.06 -0.04 4.74 37.16 0.18 0.14 16 12 O -0.31 -0.76 10.14 -19.43 -0.20 -0.95 16 13 C 0.13 0.35 6.69 -39.22 -0.26 0.08 16 14 C -0.21 -0.23 9.04 -39.44 -0.36 -0.59 16 15 C -0.07 -0.06 10.04 -39.61 -0.40 -0.46 16 16 C -0.16 -0.27 8.67 -39.56 -0.34 -0.61 16 17 C -0.04 -0.08 5.38 -104.65 -0.56 -0.64 16 18 C -0.08 -0.01 2.79 36.00 0.10 0.09 16 19 O -0.54 -0.39 12.81 -35.23 -0.45 -0.84 16 20 Si 0.95 -0.39 25.14 -169.99 -4.27 -4.66 16 21 H -0.26 0.10 7.11 56.52 0.40 0.50 16 22 H -0.25 -0.23 7.04 56.52 0.40 0.17 16 23 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 24 C -0.12 -0.35 9.62 -39.43 -0.38 -0.73 16 25 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 26 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 27 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 28 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 29 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 32 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 34 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 35 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 36 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 37 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 38 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 39 H 0.07 -0.09 7.48 -51.93 -0.39 -0.48 16 40 H 0.06 -0.17 7.21 -51.93 -0.37 -0.54 16 41 H 0.06 -0.16 7.21 -51.93 -0.37 -0.54 16 42 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 43 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.07 -0.13 7.68 -51.93 -0.40 -0.53 16 45 H 0.07 -0.12 7.65 -51.93 -0.40 -0.51 16 46 H 0.13 -0.15 6.30 -52.48 -0.33 -0.48 16 47 H 0.13 -0.19 8.06 -52.48 -0.42 -0.62 16 48 H 0.12 0.04 4.86 -52.49 -0.26 -0.22 16 49 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 50 H 0.38 -1.47 8.74 45.56 0.40 -1.07 16 51 H 0.13 0.33 8.06 -52.49 -0.42 -0.10 16 LS Contribution 403.11 15.07 6.07 6.07 Total: 0.00 -5.65 403.11 -8.78 -14.43 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -8.75 Total: -11.69 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.55 Total: 1.05 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: -0.95 Total: -2.13 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: -5.71 Total: -7.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -5.65 -8.78 -14.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.674 kcal (2) G-P(sol) polarization free energy of solvation -5.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds