Wall clock time and date at job start Mon Mar 8 2021 08:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47144 * 2 1 4 4 C 1.52995 * 109.47368 * 240.00134 * 2 1 3 5 5 Si 1.86295 * 109.47220 * 119.99689 * 2 1 3 6 6 C 1.86304 * 109.47245 * 300.00268 * 5 2 1 7 7 C 1.86297 * 109.47269 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.47255 * 59.99984 * 5 2 1 9 9 C 1.42895 * 114.00569 * 179.97438 * 8 5 2 10 10 C 1.52992 * 109.47606 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47482 * 180.02562 * 10 9 8 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38710 * 120.05544 * 359.72769 * 13 12 11 15 15 C 1.38159 * 119.94311 * 179.72143 * 14 13 12 16 16 C 1.38250 * 120.05742 * 0.57011 * 15 14 13 17 17 C 1.38280 * 120.10833 * 359.68104 * 16 15 14 18 18 C 1.50697 * 119.97205 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47393 * 245.02079 * 18 17 16 20 20 Si 1.86306 * 109.47148 * 5.02162 * 18 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 20 18 17 22 22 H 1.48491 * 109.46932 * 300.00295 * 20 18 17 23 23 H 1.48504 * 109.46673 * 59.99962 * 20 18 17 24 24 C 1.38129 * 120.05716 * 0.04353 * 17 16 15 25 25 H 1.08996 * 109.46872 * 299.99997 * 1 2 3 26 26 H 1.08998 * 109.46630 * 60.00026 * 1 2 3 27 27 H 1.08990 * 109.46784 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47000 * 299.99857 * 3 2 1 30 30 H 1.09006 * 109.46975 * 59.99731 * 3 2 1 31 31 H 1.09003 * 109.46636 * 299.99813 * 4 2 1 32 32 H 1.09003 * 109.47287 * 59.99830 * 4 2 1 33 33 H 1.08995 * 109.47220 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47218 * 179.97438 * 6 5 2 35 35 H 1.08994 * 109.46978 * 299.99632 * 6 5 2 36 36 H 1.08995 * 109.47083 * 59.99962 * 6 5 2 37 37 H 1.08996 * 109.47388 * 300.00308 * 7 5 2 38 38 H 1.09006 * 109.46801 * 60.00439 * 7 5 2 39 39 H 1.09003 * 109.47105 * 180.02562 * 7 5 2 40 40 H 1.09002 * 109.47063 * 60.00035 * 9 8 5 41 41 H 1.09001 * 109.46798 * 300.00303 * 9 8 5 42 42 H 1.09002 * 109.47103 * 59.99788 * 10 9 8 43 43 H 1.08998 * 109.46862 * 300.00600 * 10 9 8 44 44 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 45 45 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 46 46 H 1.08006 * 120.02494 * 359.97438 * 14 13 12 47 47 H 1.08006 * 119.97038 * 180.27439 * 15 14 13 48 48 H 1.08000 * 119.94133 * 179.70045 * 16 15 14 49 49 H 1.09005 * 109.47122 * 125.02014 * 18 17 16 50 50 H 0.96703 * 113.99614 * 179.97438 * 19 18 17 51 51 H 1.07998 * 120.02418 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1510 -0.8781 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8788 1.5208 8 8 1.6074 -2.4159 1.5213 9 6 2.0295 -3.1816 2.6515 10 6 1.4646 -4.5996 2.5467 11 6 1.9161 -5.4192 3.7571 12 8 1.3890 -6.7438 3.6589 13 6 1.6987 -7.6071 4.6618 14 6 2.4981 -7.1896 5.7156 15 6 2.8068 -8.0674 6.7369 16 6 2.3294 -9.3644 6.7031 17 6 1.5365 -9.7846 5.6509 18 6 1.0173 -11.1989 5.6175 19 8 1.5868 -11.8892 4.5034 20 14 1.4882 -12.0708 7.1951 21 1 0.9760 -13.4642 7.1625 22 1 2.9671 -12.0894 7.3279 23 1 0.8962 -11.3533 8.3528 24 6 1.2204 -8.9091 4.6303 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.8930 -0.5139 3.9323 35 1 1.8933 1.0277 3.0423 36 1 0.4401 0.0001 3.0423 37 1 4.3770 -1.3929 0.6308 38 1 4.3777 0.1488 1.5205 39 1 4.3773 -1.3930 2.4106 40 1 1.6654 -2.7117 3.5652 41 1 3.1184 -3.2254 2.6745 42 1 1.8291 -5.0692 1.6330 43 1 0.3758 -4.5561 2.5233 44 1 1.5513 -4.9494 4.6706 45 1 3.0050 -5.4627 3.7808 46 1 2.8756 -6.1779 5.7399 47 1 3.4256 -7.7415 7.5599 48 1 2.5758 -10.0505 7.4999 49 1 -0.0683 -11.1852 5.5200 50 1 1.2965 -12.8079 4.4198 51 1 0.6008 -9.2377 3.8091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34819_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:58:15 Heat of formation + Delta-G solvation = -147.375710 kcal Electronic energy + Delta-G solvation = -25304.470096 eV Core-core repulsion = 21713.338634 eV Total energy + Delta-G solvation = -3591.131462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24961 -39.19861 -38.15210 -37.29056 -36.82727 -33.61775 -32.57605 -30.98884 -29.36867 -29.05796 -27.83965 -27.37780 -27.18654 -26.21375 -23.69890 -22.86733 -21.75032 -20.41454 -18.91625 -18.47255 -17.84577 -17.45486 -17.40920 -16.87898 -16.10440 -15.98926 -15.85639 -15.60961 -15.24456 -14.86098 -14.82501 -14.70044 -14.48561 -14.20864 -14.09399 -13.91674 -13.54084 -13.39228 -13.36688 -13.17949 -13.03121 -12.95850 -12.92106 -12.91142 -12.60185 -12.39587 -12.32467 -12.05791 -11.86646 -11.84859 -11.70228 -11.66894 -11.61331 -11.34845 -11.28935 -10.36877 -10.30362 -10.05329 -9.89482 -9.25201 0.20752 0.38969 1.15376 1.44429 1.48033 1.52975 1.79081 1.90819 2.13800 2.18177 2.54859 2.64496 3.46362 3.77282 3.87913 3.89973 3.99092 4.06867 4.11478 4.12531 4.12681 4.26417 4.27993 4.36955 4.39540 4.46184 4.47061 4.52299 4.68499 4.75360 4.76274 4.78934 4.80341 4.82616 4.82962 4.98337 5.00105 5.06261 5.07120 5.09199 5.09582 5.21574 5.26274 5.34916 5.36096 5.40936 5.44937 5.45120 5.55396 5.61344 5.65375 5.71745 6.41360 6.80888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.317 2.683 6 C -0.517 4.517 7 C -0.518 4.518 8 O -0.642 6.642 9 C 0.081 3.919 10 C -0.121 4.121 11 C 0.053 3.947 12 O -0.331 6.331 13 C 0.118 3.882 14 C -0.208 4.208 15 C -0.075 4.075 16 C -0.177 4.177 17 C -0.050 4.050 18 C -0.089 4.089 19 O -0.563 6.563 20 Si 0.988 3.012 21 H -0.255 1.255 22 H -0.268 1.268 23 H -0.256 1.256 24 C -0.145 4.145 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.153 0.847 47 H 0.155 0.845 48 H 0.131 0.869 49 H 0.093 0.907 50 H 0.398 0.602 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 0.960 3.420 3.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.601 6.601 9 C 0.006 3.994 10 C -0.159 4.159 11 C -0.021 4.021 12 O -0.245 6.245 13 C 0.073 3.927 14 C -0.227 4.227 15 C -0.093 4.093 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.199 4.199 19 O -0.373 6.373 20 Si 0.812 3.188 21 H -0.179 1.179 22 H -0.193 1.193 23 H -0.180 1.180 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.171 0.829 47 H 0.173 0.827 48 H 0.149 0.851 49 H 0.111 0.889 50 H 0.249 0.751 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.038 0.904 3.754 3.999 hybrid contribution -0.192 0.270 -0.498 0.598 sum 0.846 1.174 3.256 3.563 Atomic orbital electron populations 1.21540 0.94350 1.01690 1.01841 1.25963 1.00359 1.03129 1.13316 1.21600 1.01302 0.94633 1.02207 1.21541 1.01036 0.99955 0.96903 0.76177 0.62552 0.52557 0.64022 1.27080 1.06843 1.09874 1.18080 1.27092 1.25160 1.05056 1.04632 1.85320 1.79743 1.46767 1.48298 1.21991 0.99171 0.90830 0.87425 1.21486 1.02757 0.93893 0.97728 1.22897 0.99499 0.79748 0.99978 1.86033 1.71525 1.22994 1.43963 1.19173 0.95154 0.90126 0.88290 1.21581 1.02948 1.02533 0.95614 1.21229 0.97547 0.92315 0.98186 1.21170 1.00706 0.97977 0.99597 1.19335 0.96978 0.94399 0.94312 1.24918 1.01035 0.92933 1.00983 1.86472 1.71941 1.30381 1.48466 0.85150 0.79871 0.78803 0.75000 1.17925 1.19295 1.18000 1.20355 1.04395 0.91090 1.00497 0.92009 0.93418 0.92668 0.91756 0.93240 0.91724 0.92676 0.93417 0.92050 0.90732 0.90347 0.91229 0.91290 0.90348 0.90759 0.90613 0.90741 0.90771 0.90616 0.89971 0.90227 0.82900 0.82721 0.85105 0.88883 0.75120 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 2 C -0.39 0.14 0.53 -10.79 -0.01 0.14 16 3 C -0.14 0.20 7.85 71.98 0.56 0.76 16 4 C -0.14 -0.13 7.85 71.98 0.56 0.44 16 5 Si 1.32 -3.92 8.45 68.60 0.58 -3.34 16 6 C -0.52 1.57 8.50 113.37 0.96 2.54 16 7 C -0.52 1.47 8.50 113.37 0.96 2.44 16 8 O -0.64 -0.04 8.56 -148.98 -1.28 -1.31 16 9 C 0.08 -0.28 5.12 71.98 0.37 0.09 16 10 C -0.12 0.11 5.95 30.59 0.18 0.29 16 11 C 0.05 -0.08 4.74 71.98 0.34 0.26 16 12 O -0.33 -1.90 10.14 -92.43 -0.94 -2.83 16 13 C 0.12 0.70 6.69 22.50 0.15 0.86 16 14 C -0.21 -0.36 9.04 22.36 0.20 -0.16 16 15 C -0.07 -0.08 10.04 22.25 0.22 0.14 16 16 C -0.18 -0.60 8.67 22.28 0.19 -0.41 16 17 C -0.05 -0.26 5.38 -19.88 -0.11 -0.37 16 18 C -0.09 -0.07 2.79 71.23 0.20 0.13 16 19 O -0.56 -1.13 12.81 -148.98 -1.91 -3.04 16 20 Si 0.99 -0.87 25.14 68.60 1.72 0.85 16 21 H -0.26 0.37 7.11 99.48 0.71 1.07 16 22 H -0.27 -0.62 7.04 99.48 0.70 0.08 16 23 H -0.26 0.00 7.11 99.48 0.71 0.71 16 24 C -0.14 -1.04 9.62 22.37 0.22 -0.83 16 25 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 26 H 0.05 0.08 8.14 -2.39 -0.02 0.07 16 27 H 0.05 0.09 7.96 -2.39 -0.02 0.08 16 28 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 29 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 31 H 0.05 0.10 7.97 -2.39 -0.02 0.08 16 32 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 34 H 0.07 -0.34 7.48 -2.39 -0.02 -0.35 16 35 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 36 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 37 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 38 H 0.08 -0.27 7.79 -2.38 -0.02 -0.29 16 39 H 0.07 -0.32 7.48 -2.39 -0.02 -0.34 16 40 H 0.08 -0.54 7.21 -2.39 -0.02 -0.56 16 41 H 0.07 -0.51 7.21 -2.39 -0.02 -0.53 16 42 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.08 -0.41 7.68 -2.39 -0.02 -0.43 16 45 H 0.08 -0.36 7.65 -2.39 -0.02 -0.38 16 46 H 0.15 -0.59 6.30 -2.91 -0.02 -0.61 16 47 H 0.16 -0.73 8.06 -2.91 -0.02 -0.75 16 48 H 0.13 0.08 4.86 -2.91 -0.01 0.06 16 49 H 0.09 -0.27 7.96 -2.38 -0.02 -0.29 16 50 H 0.40 -2.99 8.74 -74.06 -0.65 -3.63 16 51 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 Total: 0.00 -13.75 403.11 4.75 -9.01 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: 0.98 Total: -6.09 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.58 Total: 6.76 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -4.12 Total: -7.18 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: 2.30 Total: -2.49 kcal Total: -13.75 4.75 -9.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34819_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.370 kcal (2) G-P(sol) polarization free energy of solvation -13.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds