Wall clock time and date at job start Mon Mar 8 2021 10:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46975 * 2 1 4 4 C 1.35992 * 116.99992 * 179.97438 * 3 2 1 5 5 C 1.38524 * 120.07350 * 0.02562 * 4 3 2 6 6 C 1.38277 * 120.00086 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.92618 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47403 * 300.00388 * 7 6 5 9 9 Si 1.86305 * 109.47122 * 180.02562 * 7 6 5 10 10 H 1.48497 * 109.47210 * 60.00144 * 9 7 6 11 11 H 1.48498 * 109.47257 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47095 * 300.00084 * 9 7 6 13 13 C 1.38212 * 120.15109 * 359.97438 * 6 5 4 14 14 C 1.38284 * 120.14245 * 359.76267 * 13 6 5 15 15 C 1.38530 * 120.00071 * 0.51023 * 14 13 6 16 16 O 1.35983 * 120.07711 * 179.74253 * 15 14 13 17 17 C 1.42906 * 117.00105 * 359.72808 * 16 15 14 18 18 C 1.50693 * 109.47463 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00207 * 89.99418 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 17 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 Si 1.86795 * 120.00205 * 180.02562 * 21 20 19 23 23 C 1.86297 * 109.47192 * 89.99958 * 22 21 20 24 24 C 1.86301 * 109.47283 * 209.99980 * 22 21 20 25 25 C 1.86301 * 109.47118 * 329.99845 * 22 21 20 26 26 C 1.38238 * 119.99693 * 359.97438 * 21 20 19 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 21 20 28 28 H 1.08995 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47399 * 299.99942 * 1 2 3 30 30 H 1.09003 * 109.47436 * 59.99583 * 1 2 3 31 31 H 1.08999 * 109.47227 * 240.00207 * 2 1 3 32 32 H 1.09002 * 109.47110 * 119.99982 * 2 1 3 33 33 H 1.08006 * 119.99637 * 359.95373 * 5 4 3 34 34 H 1.08998 * 109.46911 * 60.00438 * 7 6 5 35 35 H 0.96707 * 113.99280 * 300.00264 * 8 7 6 36 36 H 1.07996 * 119.93341 * 180.02562 * 13 6 5 37 37 H 1.08004 * 120.00587 * 180.25509 * 14 13 6 38 38 H 1.09000 * 109.46902 * 59.99959 * 17 16 15 39 39 H 1.09001 * 109.46622 * 299.99855 * 17 16 15 40 40 H 1.08002 * 120.00157 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 42 42 H 1.08999 * 109.47282 * 60.00138 * 23 22 21 43 43 H 1.08997 * 109.47709 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.47505 * 300.00288 * 23 22 21 45 45 H 1.08998 * 109.47270 * 60.00089 * 24 22 21 46 46 H 1.08997 * 109.47416 * 180.02562 * 24 22 21 47 47 H 1.09006 * 109.46995 * 300.00168 * 24 22 21 48 48 H 1.09002 * 109.46976 * 60.00696 * 25 22 21 49 49 H 1.09005 * 109.47230 * 179.97438 * 25 22 21 50 50 H 1.08998 * 109.47233 * 299.99787 * 25 22 21 51 51 H 1.08001 * 119.99624 * 180.02562 * 26 21 20 52 52 H 1.07999 * 120.00008 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.1998 0.4280 0.0005 6 6 5.5704 0.6110 0.0005 7 6 6.4884 -0.5842 0.0011 8 8 6.2443 -1.3719 1.1681 9 14 8.2597 -0.0067 0.0018 10 1 8.5128 0.8125 1.2142 11 1 9.1643 -1.1843 0.0030 12 1 8.5138 0.8122 -1.2108 13 6 6.1004 1.8875 0.0000 14 6 5.2622 2.9873 -0.0054 15 6 3.8882 2.8111 0.0003 16 8 3.0625 3.8916 0.0002 17 6 3.6803 5.1803 0.0001 18 6 2.6165 6.2475 0.0006 19 6 2.1288 6.7368 1.1980 20 6 1.1570 7.7198 1.1985 21 6 0.6688 8.2098 0.0016 22 14 -0.6439 9.5387 0.0022 23 6 0.1692 11.2148 -0.0019 24 6 -1.7082 9.3610 -1.5165 25 6 -1.7021 9.3655 1.5258 26 6 1.1529 7.7170 -1.1958 27 6 2.1248 6.7339 -1.1963 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7882 -0.5705 0.0008 34 1 6.3023 -1.1856 -0.8887 35 1 6.3904 -0.8993 1.9992 36 1 7.1714 2.0263 -0.0004 37 1 5.6787 3.9838 -0.0100 38 1 4.3008 5.2856 -0.8899 39 1 4.3007 5.2857 0.8901 40 1 2.5106 6.3545 2.1332 41 1 0.7793 8.1053 2.1340 42 1 0.7883 11.3161 -0.8933 43 1 -0.5967 11.9903 -0.0020 44 1 0.7919 11.3188 0.8866 45 1 -2.1840 8.3803 -1.5141 46 1 -2.4740 10.1367 -1.5163 47 1 -1.0891 9.4623 -2.4079 48 1 -1.0794 9.4696 2.4143 49 1 -2.4679 10.1413 1.5264 50 1 -2.1779 8.3849 1.5282 51 1 0.7718 8.1000 -2.1309 52 1 2.5033 6.3492 -2.1318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34834_9403676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:42:58 Heat of formation + Delta-G solvation = -95.696883 kcal Electronic energy + Delta-G solvation = -29238.782936 eV Core-core repulsion = 25292.525493 eV Total energy + Delta-G solvation = -3946.257443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.77832 -40.33837 -39.33566 -38.90354 -36.98741 -33.38384 -32.67619 -31.89476 -31.65674 -30.74017 -29.44718 -28.30359 -28.27465 -27.67188 -26.20442 -24.95080 -23.49814 -22.99090 -22.59082 -21.79207 -19.74106 -18.58853 -18.26786 -17.72631 -17.38674 -16.94981 -16.79478 -16.15712 -16.08542 -15.96390 -15.92145 -15.52623 -15.12246 -14.78837 -14.35908 -14.30215 -14.14398 -14.06543 -14.05566 -13.78424 -13.73336 -13.61851 -13.47465 -13.40561 -13.13563 -13.12528 -13.01299 -12.97336 -12.82778 -12.40782 -12.36226 -12.17922 -12.14658 -12.04436 -11.80754 -11.71245 -11.58334 -10.92855 -10.78638 -10.76641 -10.44011 -9.82267 -9.80773 -9.69682 -8.91810 0.14259 0.15133 0.23193 0.50842 1.17810 1.47322 1.53018 1.82838 1.91718 1.98652 2.01729 2.17277 2.29108 2.52857 2.66076 3.00667 3.47799 3.57349 3.70428 3.80086 3.83417 3.87888 3.99627 4.05172 4.08501 4.18906 4.22718 4.24169 4.30849 4.35238 4.51426 4.56545 4.62903 4.70044 4.78801 4.84142 4.84365 4.87627 4.88066 4.88634 4.89009 4.90379 4.96338 4.99225 5.08867 5.14610 5.17418 5.32312 5.39000 5.55435 5.56928 5.58573 5.58987 5.67512 5.69731 6.03030 6.11413 6.52185 6.68719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.329 6.329 4 C 0.083 3.917 5 C -0.147 4.147 6 C -0.118 4.118 7 C -0.077 4.077 8 O -0.552 6.552 9 Si 0.985 3.015 10 H -0.250 1.250 11 H -0.275 1.275 12 H -0.255 1.255 13 C -0.125 4.125 14 C -0.167 4.167 15 C 0.087 3.913 16 O -0.319 6.319 17 C 0.097 3.903 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.374 4.374 22 Si 1.127 2.873 23 C -0.460 4.460 24 C -0.463 4.463 25 C -0.463 4.463 26 C -0.104 4.104 27 C -0.123 4.123 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.389 0.611 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.140 0.860 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 1.792 0.138 1.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.243 6.243 4 C 0.038 3.962 5 C -0.166 4.166 6 C -0.119 4.119 7 C -0.187 4.187 8 O -0.359 6.359 9 Si 0.809 3.191 10 H -0.174 1.174 11 H -0.201 1.201 12 H -0.179 1.179 13 C -0.143 4.143 14 C -0.186 4.186 15 C 0.041 3.959 16 O -0.234 6.234 17 C 0.023 3.977 18 C -0.103 4.103 19 C -0.141 4.141 20 C -0.121 4.121 21 C -0.413 4.413 22 Si 1.314 2.686 23 C -0.567 4.567 24 C -0.570 4.570 25 C -0.570 4.570 26 C -0.122 4.122 27 C -0.141 4.141 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.238 0.762 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.158 0.842 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.812 1.719 -0.302 1.925 hybrid contribution 0.024 -0.116 0.333 0.353 sum 0.836 1.603 0.030 1.808 Atomic orbital electron populations 1.21793 0.91901 1.04052 1.02930 1.23030 0.96682 0.80845 1.02209 1.86170 1.18293 1.30895 1.88991 1.18551 0.83542 0.91692 1.02432 1.21027 0.93205 0.97730 1.04617 1.20186 0.94085 0.95275 1.02313 1.25038 1.08034 0.93525 0.92142 1.86477 1.92366 1.40947 1.16145 0.85184 0.73788 0.78744 0.81400 1.17364 1.20077 1.17917 1.20965 1.00227 0.91536 1.01570 1.21244 0.90339 1.01404 1.05575 1.18554 0.89797 0.85299 1.02241 1.86240 1.34970 1.13208 1.88945 1.21786 0.93946 0.78750 1.03239 1.19637 0.99083 0.97229 0.94371 1.21376 0.97595 0.97611 0.97481 1.21394 0.95661 0.95776 0.99318 1.28098 1.09534 1.09912 0.93755 0.77179 0.62709 0.62641 0.66079 1.26251 1.07860 1.18094 1.04481 1.26285 1.10207 1.04722 1.15776 1.26284 1.10142 1.04715 1.15839 1.21394 0.95679 0.95767 0.99316 1.21377 0.97584 0.97625 0.97497 0.88155 0.92184 0.92178 0.91106 0.91126 0.83404 0.85741 0.76206 0.84134 0.82502 0.89898 0.89876 0.85581 0.84232 0.91329 0.90567 0.91316 0.91506 0.90533 0.90892 0.90881 0.90533 0.91502 0.84248 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.07 10.28 71.98 0.74 0.67 16 2 C 0.05 0.13 5.46 71.98 0.39 0.52 16 3 O -0.33 -3.33 9.92 -79.61 -0.79 -4.12 16 4 C 0.08 0.72 6.70 22.57 0.15 0.87 16 5 C -0.15 -0.65 8.60 22.35 0.19 -0.45 16 6 C -0.12 -0.24 5.39 -19.86 -0.11 -0.34 16 7 C -0.08 0.07 2.82 71.24 0.20 0.27 16 8 O -0.55 -0.14 12.77 -148.98 -1.90 -2.04 16 9 Si 0.98 -1.72 25.06 68.60 1.72 0.00 16 10 H -0.25 0.49 7.11 99.48 0.71 1.20 16 11 H -0.28 -0.49 7.11 99.48 0.71 0.21 16 12 H -0.26 0.25 7.11 99.48 0.71 0.96 16 13 C -0.13 -0.18 8.66 22.27 0.19 0.02 16 14 C -0.17 -0.48 9.04 22.35 0.20 -0.28 16 15 C 0.09 0.70 6.70 22.57 0.15 0.85 16 16 O -0.32 -3.15 9.91 -79.52 -0.79 -3.94 16 17 C 0.10 0.34 4.87 71.23 0.35 0.68 16 18 C -0.10 -0.56 5.51 -19.87 -0.11 -0.67 16 19 C -0.12 -0.56 9.70 22.27 0.22 -0.35 16 20 C -0.10 -0.24 9.29 22.27 0.21 -0.03 16 21 C -0.37 -0.34 4.59 22.27 0.10 -0.24 16 22 Si 1.13 -5.41 12.32 68.60 0.85 -4.57 16 23 C -0.46 1.53 8.65 113.37 0.98 2.52 16 24 C -0.46 1.52 8.53 113.37 0.97 2.49 16 25 C -0.46 1.53 8.53 113.37 0.97 2.50 16 26 C -0.10 -0.25 9.29 22.27 0.21 -0.04 16 27 C -0.12 -0.57 9.70 22.27 0.22 -0.35 16 28 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 0.02 7.66 -2.39 -0.02 0.01 16 32 H 0.07 0.04 7.66 -2.39 -0.02 0.02 16 33 H 0.15 0.28 6.30 -2.91 -0.02 0.26 16 34 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.39 -2.27 8.70 -74.05 -0.64 -2.91 16 36 H 0.14 -0.34 4.87 -2.91 -0.01 -0.35 16 37 H 0.16 -0.33 6.30 -2.91 -0.02 -0.34 16 38 H 0.08 0.02 7.60 -2.39 -0.02 0.00 16 39 H 0.08 0.01 7.62 -2.39 -0.02 -0.01 16 40 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 41 H 0.14 -0.30 7.43 -2.91 -0.02 -0.32 16 42 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 43 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 45 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 46 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 47 H 0.07 -0.27 7.69 -2.38 -0.02 -0.29 16 48 H 0.07 -0.28 7.69 -2.39 -0.02 -0.30 16 49 H 0.08 -0.30 7.96 -2.38 -0.02 -0.32 16 50 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 51 H 0.14 -0.29 7.43 -2.91 -0.02 -0.31 16 52 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 Total: 0.00 -16.31 424.80 6.32 -9.99 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 1.02 Total: -3.95 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.22 Total: 8.62 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -3.48 Total: -10.10 kcal Atomic # 14 Polarization: -7.13 SS G_CDS: 2.56 Total: -4.57 kcal Total: -16.31 6.32 -9.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34834_9403676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.710 kcal (2) G-P(sol) polarization free energy of solvation -16.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds