Wall clock time and date at job start Mon Mar 8 2021 11:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00135 * 2 1 4 4 C 1.38528 * 120.07005 * 0.02562 * 3 2 1 5 5 C 1.38292 * 119.99553 * 179.97438 * 4 3 2 6 6 C 1.38206 * 120.14604 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.92056 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46673 * 119.99886 * 7 6 5 9 9 Si 1.86300 * 109.47424 * 359.97438 * 7 6 5 10 10 H 1.48498 * 109.46826 * 59.99676 * 9 7 6 11 11 H 1.48498 * 109.47166 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46828 * 300.00202 * 9 7 6 13 13 C 1.38285 * 120.14928 * 359.76365 * 6 5 4 14 14 C 1.38521 * 119.99823 * 0.51664 * 13 6 5 15 15 O 1.35995 * 120.07493 * 179.74314 * 14 13 6 16 16 C 1.42903 * 116.99587 * 359.72203 * 15 14 13 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47405 * 64.99720 * 17 16 15 19 19 Si 1.63104 * 113.99972 * 179.97438 * 18 17 16 20 20 C 1.86297 * 109.47259 * 300.00387 * 19 18 17 21 21 C 1.86303 * 109.46923 * 60.00303 * 19 18 17 22 22 C 1.86299 * 109.46989 * 180.02562 * 19 18 17 23 23 C 1.53000 * 109.46921 * 59.99970 * 22 19 18 24 24 C 1.52997 * 109.46904 * 180.02562 * 22 19 18 25 25 C 1.52995 * 109.46973 * 300.00341 * 22 19 18 26 26 H 1.09007 * 109.46974 * 60.00084 * 1 2 3 27 27 H 1.08992 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 300.00158 * 1 2 3 29 29 H 1.07993 * 120.00357 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.92120 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46859 * 239.99667 * 7 6 5 32 32 H 0.96697 * 114.00195 * 299.99566 * 8 7 6 33 33 H 1.07998 * 119.99854 * 180.25635 * 13 6 5 34 34 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 35 35 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 36 36 H 1.09002 * 109.46642 * 184.99995 * 17 16 15 37 37 H 1.09002 * 109.47069 * 304.99524 * 17 16 15 38 38 H 1.08998 * 109.47381 * 59.99876 * 20 19 18 39 39 H 1.08999 * 109.47492 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46818 * 299.99971 * 20 19 18 41 41 H 1.08998 * 109.46674 * 59.99804 * 21 19 18 42 42 H 1.08991 * 109.47013 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47060 * 299.99722 * 21 19 18 44 44 H 1.08999 * 109.47189 * 60.00528 * 23 22 19 45 45 H 1.08998 * 109.46838 * 179.97438 * 23 22 19 46 46 H 1.08991 * 109.47403 * 299.99887 * 23 22 19 47 47 H 1.08994 * 109.47445 * 59.99723 * 24 22 19 48 48 H 1.09000 * 109.46663 * 180.02562 * 24 22 19 49 49 H 1.09002 * 109.47015 * 299.99953 * 24 22 19 50 50 H 1.08999 * 109.47775 * 60.00054 * 25 22 19 51 51 H 1.09008 * 109.47049 * 180.02562 * 25 22 19 52 52 H 1.09002 * 109.47582 * 299.99598 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9229 3.6058 0.0011 6 6 3.3029 3.6798 0.0016 7 6 3.9836 5.0244 0.0028 8 8 4.7993 5.1442 1.1700 9 14 2.6971 6.3719 0.0025 10 1 1.8480 6.2458 1.2142 11 1 3.3679 7.6967 0.0042 12 1 1.8498 6.2469 -1.2108 13 6 4.0605 2.5230 0.0065 14 6 3.4364 1.2864 0.0001 15 8 4.1799 0.1477 -0.0003 16 6 5.6008 0.3007 -0.0001 17 6 6.2622 -1.0789 -0.0013 18 8 5.9548 -1.7536 -1.2229 19 14 6.6092 -3.2429 -1.3411 20 6 8.4648 -3.1160 -1.2351 21 6 5.9793 -4.3102 0.0499 22 6 6.1315 -4.0033 -2.9734 23 6 6.6493 -3.1265 -4.1154 24 6 6.7449 -5.4006 -3.0840 25 6 4.6076 -4.1074 -3.0610 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2149 2.3193 0.0005 30 1 1.3346 4.5116 0.0011 31 1 4.6065 5.1170 -0.8869 32 1 4.3101 5.0714 2.0009 33 1 5.1388 2.5837 0.0111 34 1 5.9069 0.8501 0.8901 35 1 5.9070 0.8509 -0.8899 36 1 7.3424 -0.9639 0.0884 37 1 5.8878 -1.6621 0.8401 38 1 8.7447 -2.6709 -0.2803 39 1 8.9022 -4.1113 -1.3136 40 1 8.8333 -2.4915 -2.0490 41 1 4.8936 -4.3843 -0.0121 42 1 6.4162 -5.3055 -0.0293 43 1 6.2591 -3.8651 1.0048 44 1 7.7350 -3.0524 -4.0530 45 1 6.3702 -3.5717 -5.0704 46 1 6.2120 -2.1313 -4.0364 47 1 6.3758 -6.0249 -2.2704 48 1 6.4658 -5.8452 -4.0392 49 1 7.8306 -5.3267 -3.0214 50 1 4.1702 -3.1121 -2.9820 51 1 4.3281 -4.5527 -4.0159 52 1 4.2387 -4.7320 -2.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_34849_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:11 Heat of formation + Delta-G solvation = -181.016082 kcal Electronic energy + Delta-G solvation = -28885.808489 eV Core-core repulsion = 24974.536079 eV Total energy + Delta-G solvation = -3911.272410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58155 -39.56817 -38.93270 -37.72311 -36.83229 -36.78901 -32.04086 -31.52134 -30.25417 -29.34303 -29.06118 -28.54368 -27.82939 -27.34760 -26.15066 -24.58900 -22.75808 -22.24564 -20.38462 -19.58070 -18.41822 -18.26169 -18.03508 -17.22506 -16.87314 -16.30324 -16.14844 -16.05497 -15.95276 -15.83476 -15.49363 -15.41022 -14.98650 -14.82889 -14.70361 -14.55456 -14.05211 -13.92047 -13.61489 -13.49621 -13.39771 -13.23154 -13.22215 -13.05143 -12.91307 -12.88357 -12.64265 -12.37072 -12.33151 -12.22363 -12.07129 -12.02072 -11.93070 -11.77830 -11.66127 -11.57456 -11.48184 -11.26752 -10.43475 -10.34099 -10.03858 -9.67735 -8.73655 0.27983 0.38564 1.15640 1.43623 1.46923 1.51523 1.76634 1.90993 2.08213 2.23314 2.34961 2.46013 2.67068 3.44819 3.67405 3.78939 3.89931 3.96398 4.05920 4.15540 4.15969 4.17085 4.22357 4.26778 4.28588 4.34016 4.42572 4.50951 4.56549 4.61406 4.64010 4.67494 4.71282 4.72262 4.75568 4.78760 4.83854 4.89795 5.03708 5.08938 5.13980 5.15024 5.21085 5.21703 5.36112 5.39373 5.44376 5.45558 5.54196 5.55305 5.63216 5.66618 6.15312 6.54057 6.66642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.303 6.303 3 C 0.105 3.895 4 C -0.168 4.168 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.077 4.077 8 O -0.539 6.539 9 Si 0.952 3.048 10 H -0.251 1.251 11 H -0.255 1.255 12 H -0.251 1.251 13 C -0.147 4.147 14 C 0.106 3.894 15 O -0.291 6.291 16 C 0.055 3.945 17 C 0.088 3.912 18 O -0.618 6.618 19 Si 1.286 2.714 20 C -0.512 4.512 21 C -0.510 4.510 22 C -0.374 4.374 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.377 0.623 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 0.560 1.243 1.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.059 3.941 4 C -0.187 4.187 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.188 4.188 8 O -0.344 6.344 9 Si 0.775 3.225 10 H -0.175 1.175 11 H -0.179 1.179 12 H -0.174 1.174 13 C -0.166 4.166 14 C 0.060 3.940 15 O -0.205 6.205 16 C -0.020 4.020 17 C 0.012 3.988 18 O -0.577 6.577 19 Si 1.417 2.583 20 C -0.614 4.614 21 C -0.612 4.612 22 C -0.417 4.417 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.191 4.191 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.224 0.776 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.852 1.070 0.656 1.517 hybrid contribution -0.004 -0.656 0.415 0.776 sum -0.856 0.415 1.071 1.432 Atomic orbital electron populations 1.23110 0.78368 1.04281 1.01273 1.86212 1.21125 1.25632 1.88676 1.18308 0.89224 0.85334 1.01200 1.20997 1.00147 0.91161 1.06369 1.20706 0.93760 0.97356 1.02359 1.19974 0.93219 0.95597 1.03057 1.24938 1.02634 0.99342 0.91872 1.86501 1.37091 1.95502 1.15343 0.85658 0.77228 0.77890 0.81769 1.17515 1.17906 1.17443 1.20897 1.00673 0.90022 1.05035 1.18272 0.88287 0.86271 1.01150 1.86251 1.18087 1.27619 1.88513 1.23028 0.79088 0.97713 1.02213 1.22066 0.98253 0.92541 0.85915 1.85409 1.80390 1.51366 1.40516 0.76744 0.62102 0.54202 0.65229 1.27048 1.25046 1.04871 1.04390 1.27021 1.07261 1.11540 1.15395 1.25764 0.99752 1.01384 1.14837 1.21506 1.00488 0.99405 0.97679 1.21555 1.00285 0.95339 1.02176 1.21504 0.93792 1.02084 1.01701 0.92583 0.88006 0.92621 0.84425 0.85879 0.86432 0.77633 0.84164 0.90632 0.90776 0.90478 0.91457 0.91505 0.90677 0.90857 0.90740 0.90832 0.91520 0.92754 0.92840 0.92162 0.92524 0.92542 0.92568 0.92007 0.92910 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.98 16 2 O -0.30 -1.07 10.28 -34.21 -0.35 -1.42 16 3 C 0.11 0.34 6.70 -39.12 -0.26 0.08 16 4 C -0.17 -0.21 9.04 -39.45 -0.36 -0.57 16 5 C -0.12 -0.10 8.66 -39.57 -0.34 -0.45 16 6 C -0.12 -0.11 5.39 -104.61 -0.56 -0.67 16 7 C -0.08 0.03 2.82 36.01 0.10 0.13 16 8 O -0.54 -0.02 12.76 -35.23 -0.45 -0.47 16 9 Si 0.95 -0.59 25.07 -169.99 -4.26 -4.85 16 10 H -0.25 0.12 7.11 56.52 0.40 0.52 16 11 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 12 H -0.25 0.01 7.11 56.52 0.40 0.41 16 13 C -0.15 -0.23 8.60 -39.46 -0.34 -0.57 16 14 C 0.11 0.35 6.70 -39.12 -0.26 0.09 16 15 O -0.29 -1.07 9.89 -40.69 -0.40 -1.47 16 16 C 0.05 0.02 5.12 37.16 0.19 0.21 16 17 C 0.09 -0.04 5.50 37.16 0.20 0.17 16 18 O -0.62 -0.79 8.52 -40.09 -0.34 -1.13 16 19 Si 1.29 -0.56 8.45 -169.99 -1.44 -2.00 16 20 C -0.51 0.35 8.50 101.05 0.86 1.21 16 21 C -0.51 -0.04 8.50 101.05 0.86 0.82 16 22 C -0.37 -0.15 0.53 -90.62 -0.05 -0.20 16 23 C -0.13 -0.09 7.85 37.16 0.29 0.20 16 24 C -0.14 0.02 7.85 37.16 0.29 0.31 16 25 C -0.13 -0.15 7.84 37.15 0.29 0.14 16 26 H 0.06 -0.09 7.66 -51.92 -0.40 -0.49 16 27 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 28 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 29 H 0.14 -0.14 6.30 -52.49 -0.33 -0.47 16 30 H 0.12 -0.08 4.87 -52.49 -0.26 -0.34 16 31 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 33 H 0.14 0.02 6.30 -52.49 -0.33 -0.31 16 34 H 0.08 -0.14 7.65 -51.93 -0.40 -0.53 16 35 H 0.07 -0.02 7.68 -51.93 -0.40 -0.42 16 36 H 0.08 -0.23 7.21 -51.93 -0.37 -0.61 16 37 H 0.07 -0.07 7.21 -51.93 -0.37 -0.44 16 38 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 41 H 0.07 0.06 7.79 -51.93 -0.40 -0.34 16 42 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 43 H 0.07 -0.02 7.48 -51.93 -0.39 -0.41 16 44 H 0.05 -0.01 7.79 -51.93 -0.40 -0.41 16 45 H 0.05 0.05 8.14 -51.93 -0.42 -0.38 16 46 H 0.06 0.07 7.96 -51.93 -0.41 -0.35 16 47 H 0.06 -0.04 7.79 -51.93 -0.40 -0.44 16 48 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 49 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 50 H 0.06 0.12 7.97 -51.93 -0.41 -0.29 16 51 H 0.05 0.06 8.14 -51.92 -0.42 -0.36 16 52 H 0.05 0.03 7.80 -51.93 -0.40 -0.37 16 LS Contribution 410.70 15.07 6.19 6.19 Total: 0.00 -6.47 410.70 -7.75 -14.22 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -8.60 Total: -10.94 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 1.91 Total: 1.86 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -1.55 Total: -4.49 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -5.70 Total: -6.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -6.47 -7.75 -14.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.795 kcal (2) G-P(sol) polarization free energy of solvation -6.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds