Wall clock time and date at job start Mon Mar 8 2021 11:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00135 * 2 1 4 4 C 1.38528 * 120.07005 * 0.02562 * 3 2 1 5 5 C 1.38292 * 119.99553 * 179.97438 * 4 3 2 6 6 C 1.38206 * 120.14604 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.92056 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.46673 * 119.99886 * 7 6 5 9 9 Si 1.86300 * 109.47424 * 359.97438 * 7 6 5 10 10 H 1.48498 * 109.46826 * 59.99676 * 9 7 6 11 11 H 1.48498 * 109.47166 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46828 * 300.00202 * 9 7 6 13 13 C 1.38285 * 120.14928 * 359.76365 * 6 5 4 14 14 C 1.38521 * 119.99823 * 0.51664 * 13 6 5 15 15 O 1.35995 * 120.07493 * 179.74314 * 14 13 6 16 16 C 1.42903 * 116.99587 * 359.72203 * 15 14 13 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47405 * 64.99720 * 17 16 15 19 19 Si 1.63104 * 113.99972 * 179.97438 * 18 17 16 20 20 C 1.86297 * 109.47259 * 300.00387 * 19 18 17 21 21 C 1.86303 * 109.46923 * 60.00303 * 19 18 17 22 22 C 1.86299 * 109.46989 * 180.02562 * 19 18 17 23 23 C 1.53000 * 109.46921 * 59.99970 * 22 19 18 24 24 C 1.52997 * 109.46904 * 180.02562 * 22 19 18 25 25 C 1.52995 * 109.46973 * 300.00341 * 22 19 18 26 26 H 1.09007 * 109.46974 * 60.00084 * 1 2 3 27 27 H 1.08992 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46999 * 300.00158 * 1 2 3 29 29 H 1.07993 * 120.00357 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.92120 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.46859 * 239.99667 * 7 6 5 32 32 H 0.96697 * 114.00195 * 299.99566 * 8 7 6 33 33 H 1.07998 * 119.99854 * 180.25635 * 13 6 5 34 34 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 35 35 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 36 36 H 1.09002 * 109.46642 * 184.99995 * 17 16 15 37 37 H 1.09002 * 109.47069 * 304.99524 * 17 16 15 38 38 H 1.08998 * 109.47381 * 59.99876 * 20 19 18 39 39 H 1.08999 * 109.47492 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46818 * 299.99971 * 20 19 18 41 41 H 1.08998 * 109.46674 * 59.99804 * 21 19 18 42 42 H 1.08991 * 109.47013 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47060 * 299.99722 * 21 19 18 44 44 H 1.08999 * 109.47189 * 60.00528 * 23 22 19 45 45 H 1.08998 * 109.46838 * 179.97438 * 23 22 19 46 46 H 1.08991 * 109.47403 * 299.99887 * 23 22 19 47 47 H 1.08994 * 109.47445 * 59.99723 * 24 22 19 48 48 H 1.09000 * 109.46663 * 180.02562 * 24 22 19 49 49 H 1.09002 * 109.47015 * 299.99953 * 24 22 19 50 50 H 1.08999 * 109.47775 * 60.00054 * 25 22 19 51 51 H 1.09008 * 109.47049 * 180.02562 * 25 22 19 52 52 H 1.09002 * 109.47582 * 299.99598 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9229 3.6058 0.0011 6 6 3.3029 3.6798 0.0016 7 6 3.9836 5.0244 0.0028 8 8 4.7993 5.1442 1.1700 9 14 2.6971 6.3719 0.0025 10 1 1.8480 6.2458 1.2142 11 1 3.3679 7.6967 0.0042 12 1 1.8498 6.2469 -1.2108 13 6 4.0605 2.5230 0.0065 14 6 3.4364 1.2864 0.0001 15 8 4.1799 0.1477 -0.0003 16 6 5.6008 0.3007 -0.0001 17 6 6.2622 -1.0789 -0.0013 18 8 5.9548 -1.7536 -1.2229 19 14 6.6092 -3.2429 -1.3411 20 6 8.4648 -3.1160 -1.2351 21 6 5.9793 -4.3102 0.0499 22 6 6.1315 -4.0033 -2.9734 23 6 6.6493 -3.1265 -4.1154 24 6 6.7449 -5.4006 -3.0840 25 6 4.6076 -4.1074 -3.0610 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2149 2.3193 0.0005 30 1 1.3346 4.5116 0.0011 31 1 4.6065 5.1170 -0.8869 32 1 4.3101 5.0714 2.0009 33 1 5.1388 2.5837 0.0111 34 1 5.9069 0.8501 0.8901 35 1 5.9070 0.8509 -0.8899 36 1 7.3424 -0.9639 0.0884 37 1 5.8878 -1.6621 0.8401 38 1 8.7447 -2.6709 -0.2803 39 1 8.9022 -4.1113 -1.3136 40 1 8.8333 -2.4915 -2.0490 41 1 4.8936 -4.3843 -0.0121 42 1 6.4162 -5.3055 -0.0293 43 1 6.2591 -3.8651 1.0048 44 1 7.7350 -3.0524 -4.0530 45 1 6.3702 -3.5717 -5.0704 46 1 6.2120 -2.1313 -4.0364 47 1 6.3758 -6.0249 -2.2704 48 1 6.4658 -5.8452 -4.0392 49 1 7.8306 -5.3267 -3.0214 50 1 4.1702 -3.1121 -2.9820 51 1 4.3281 -4.5527 -4.0159 52 1 4.2387 -4.7320 -2.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:10 Heat of formation + Delta-G solvation = -174.809648 kcal Electronic energy + Delta-G solvation = -28885.539358 eV Core-core repulsion = 24974.536079 eV Total energy + Delta-G solvation = -3911.003279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65232 -39.63960 -38.95965 -37.72383 -36.85374 -36.81783 -32.06920 -31.56992 -30.26767 -29.31100 -29.06299 -28.51567 -27.83838 -27.38640 -26.15397 -24.59143 -22.79159 -22.28075 -20.41950 -19.64529 -18.45218 -18.27643 -18.02693 -17.27168 -16.92843 -16.30312 -16.14563 -16.02928 -15.97640 -15.85723 -15.50675 -15.40863 -14.98504 -14.85312 -14.75779 -14.56504 -14.06120 -13.91894 -13.59628 -13.49024 -13.35661 -13.23274 -13.17405 -13.03308 -12.96508 -12.92054 -12.62885 -12.40760 -12.32824 -12.19624 -12.07022 -12.01757 -11.94889 -11.78138 -11.69947 -11.58080 -11.47423 -11.25040 -10.40625 -10.30855 -10.05243 -9.74424 -8.84312 0.20389 0.29638 1.20547 1.49003 1.53608 1.55035 1.78757 1.93703 2.14227 2.21976 2.33523 2.48772 2.59220 3.52001 3.68407 3.79847 3.89999 4.00346 4.10507 4.11938 4.13628 4.21182 4.27659 4.31638 4.38058 4.38582 4.45745 4.46995 4.60378 4.67333 4.70265 4.73085 4.75068 4.78488 4.79615 4.80456 4.81591 4.83030 4.99132 5.03452 5.08362 5.08601 5.15386 5.19558 5.32977 5.37755 5.39892 5.43230 5.49509 5.59306 5.63473 5.65003 6.11330 6.60195 6.72515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.082 3.918 4 C -0.168 4.168 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.076 4.076 8 O -0.551 6.551 9 Si 0.984 3.016 10 H -0.250 1.250 11 H -0.276 1.276 12 H -0.257 1.257 13 C -0.150 4.150 14 C 0.086 3.914 15 O -0.316 6.316 16 C 0.047 3.953 17 C 0.077 3.923 18 O -0.639 6.639 19 Si 1.311 2.689 20 C -0.512 4.512 21 C -0.518 4.518 22 C -0.383 4.383 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.135 4.135 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.389 0.611 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.049 0.951 51 H 0.048 0.952 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 1.049 1.781 2.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.036 3.964 4 C -0.186 4.186 5 C -0.147 4.147 6 C -0.119 4.119 7 C -0.186 4.186 8 O -0.358 6.358 9 Si 0.808 3.192 10 H -0.174 1.174 11 H -0.201 1.201 12 H -0.182 1.182 13 C -0.168 4.168 14 C 0.040 3.960 15 O -0.230 6.230 16 C -0.028 4.028 17 C 0.002 3.998 18 O -0.599 6.599 19 Si 1.441 2.559 20 C -0.615 4.615 21 C -0.619 4.619 22 C -0.425 4.425 23 C -0.193 4.193 24 C -0.197 4.197 25 C -0.192 4.192 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.238 0.762 33 H 0.169 0.831 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.347 1.545 1.200 1.987 hybrid contribution -0.194 -0.794 0.249 0.854 sum -0.542 0.752 1.449 1.719 Atomic orbital electron populations 1.23334 0.76697 1.05356 1.02319 1.86164 1.23075 1.26302 1.88990 1.18621 0.89647 0.85835 1.02277 1.21250 1.01145 0.90704 1.05529 1.20951 0.94003 0.97801 1.01975 1.20177 0.93410 0.95965 1.02381 1.24996 1.02839 0.98595 0.92162 1.86471 1.37814 1.95435 1.16101 0.85195 0.76417 0.76249 0.81293 1.17397 1.20148 1.18160 1.21043 1.01297 0.89699 1.04788 1.18579 0.88691 0.86763 1.01993 1.86215 1.19647 1.28358 1.88769 1.23278 0.77771 0.98584 1.03166 1.22340 0.99888 0.92135 0.85440 1.85401 1.81025 1.52140 1.41320 0.76293 0.62304 0.53326 0.63940 1.27014 1.24244 1.05278 1.04947 1.27118 1.06564 1.12175 1.16086 1.25917 0.98987 1.01935 1.15682 1.21525 1.01137 0.99010 0.97591 1.21593 1.00983 0.94972 1.02112 1.21512 0.94728 1.01349 1.01639 0.91620 0.87036 0.91398 0.82494 0.84370 0.85773 0.76201 0.83133 0.88733 0.90663 0.87622 0.91182 0.90563 0.90241 0.90868 0.91878 0.90290 0.91032 0.91701 0.93365 0.92918 0.91941 0.93140 0.91493 0.93225 0.93265 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.83 10.28 -79.66 -0.82 -3.65 16 3 C 0.08 0.62 6.70 22.57 0.15 0.77 16 4 C -0.17 -0.45 9.04 22.35 0.20 -0.25 16 5 C -0.13 -0.18 8.66 22.27 0.19 0.02 16 6 C -0.12 -0.20 5.39 -19.86 -0.11 -0.30 16 7 C -0.08 0.10 2.82 71.24 0.20 0.30 16 8 O -0.55 0.30 12.76 -148.98 -1.90 -1.60 16 9 Si 0.98 -1.76 25.07 68.60 1.72 -0.04 16 10 H -0.25 0.51 7.11 99.48 0.71 1.22 16 11 H -0.28 -0.48 7.11 99.48 0.71 0.23 16 12 H -0.26 0.18 7.11 99.48 0.71 0.89 16 13 C -0.15 -0.53 8.60 22.35 0.19 -0.34 16 14 C 0.09 0.67 6.70 22.57 0.15 0.82 16 15 O -0.32 -2.79 9.89 -73.46 -0.73 -3.52 16 16 C 0.05 0.05 5.12 71.98 0.37 0.42 16 17 C 0.08 -0.05 5.50 71.98 0.40 0.34 16 18 O -0.64 -2.07 8.52 -144.34 -1.23 -3.30 16 19 Si 1.31 -0.95 8.45 68.60 0.58 -0.37 16 20 C -0.51 1.22 8.50 113.37 0.96 2.19 16 21 C -0.52 -0.23 8.50 113.37 0.96 0.73 16 22 C -0.38 -0.58 0.53 -10.80 -0.01 -0.58 16 23 C -0.14 -0.28 7.85 71.98 0.56 0.28 16 24 C -0.14 0.01 7.85 71.98 0.56 0.58 16 25 C -0.14 -0.52 7.84 71.98 0.56 0.05 16 26 H 0.07 -0.20 7.66 -2.38 -0.02 -0.22 16 27 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.16 -0.38 6.30 -2.91 -0.02 -0.40 16 30 H 0.14 -0.32 4.87 -2.91 -0.01 -0.33 16 31 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 33 H 0.15 0.06 6.30 -2.91 -0.02 0.04 16 34 H 0.09 -0.34 7.65 -2.39 -0.02 -0.35 16 35 H 0.08 0.02 7.68 -2.39 -0.02 0.00 16 36 H 0.11 -0.74 7.21 -2.39 -0.02 -0.76 16 37 H 0.07 -0.12 7.21 -2.39 -0.02 -0.14 16 38 H 0.08 -0.31 7.48 -2.39 -0.02 -0.33 16 39 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 40 H 0.07 -0.15 7.79 -2.38 -0.02 -0.16 16 41 H 0.06 0.17 7.79 -2.39 -0.02 0.16 16 42 H 0.08 -0.07 7.79 -2.39 -0.02 -0.09 16 43 H 0.07 -0.05 7.48 -2.39 -0.02 -0.07 16 44 H 0.06 -0.02 7.79 -2.39 -0.02 -0.03 16 45 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.05 0.18 7.96 -2.39 -0.02 0.16 16 47 H 0.06 -0.09 7.79 -2.39 -0.02 -0.10 16 48 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 50 H 0.05 0.30 7.97 -2.39 -0.02 0.28 16 51 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 52 H 0.06 0.16 7.80 -2.39 -0.02 0.14 16 Total: 0.00 -15.69 410.70 5.10 -10.59 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.00 Total: -4.23 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 6.48 Total: 6.12 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -4.68 Total: -12.07 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.30 Total: -0.41 kcal Total: -15.69 5.10 -10.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.215 kcal (2) G-P(sol) polarization free energy of solvation -15.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds