Wall clock time and date at job start Mon Mar 8 2021 09:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35994 * 116.99884 * 2 1 4 4 C 1.39157 * 120.06860 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07639 * 359.97438 * 4 3 2 6 6 C 1.42901 * 117.00282 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47409 * 179.97438 * 6 5 4 8 8 H 1.08999 * 112.90686 * 316.25346 * 7 6 5 9 9 C 1.53781 * 113.61611 * 87.50203 * 7 6 5 10 10 C 1.54049 * 87.08031 * 139.97702 * 9 7 6 11 11 H 1.09000 * 113.61076 * 89.06984 * 10 9 7 12 12 O 1.42891 * 113.69771 * 220.05337 * 10 9 7 13 13 C 1.42903 * 114.00062 * 247.41949 * 12 10 9 14 14 C 1.52999 * 109.46836 * 60.00351 * 13 12 10 15 15 C 1.53001 * 109.47003 * 180.02562 * 13 12 10 16 16 C 1.52995 * 109.47392 * 300.00199 * 13 12 10 17 17 C 1.53781 * 113.61529 * 185.00009 * 7 6 5 18 18 C 1.38570 * 119.85026 * 180.25151 * 4 3 2 19 19 C 1.38245 * 119.99774 * 359.47210 * 18 4 3 20 20 C 1.50703 * 119.92678 * 180.25385 * 19 18 4 21 21 O 1.42904 * 109.46977 * 300.25747 * 20 19 18 22 22 Si 1.86294 * 109.47268 * 180.25357 * 20 19 18 23 23 C 1.38256 * 120.14809 * 0.50791 * 19 18 4 24 24 C 1.38241 * 120.14315 * 359.76911 * 23 19 18 25 25 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47402 * 300.00680 * 1 2 3 27 27 H 1.09001 * 109.46804 * 60.00692 * 1 2 3 28 28 H 1.08997 * 109.46605 * 59.99573 * 6 5 4 29 29 H 1.09002 * 109.46811 * 300.00201 * 6 5 4 30 30 H 1.09005 * 113.61471 * 254.53285 * 9 7 6 31 31 H 1.08996 * 113.61178 * 25.34627 * 9 7 6 32 32 H 1.08998 * 109.47441 * 60.00084 * 14 13 12 33 33 H 1.09003 * 109.46908 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.47099 * 299.99962 * 14 13 12 35 35 H 1.08990 * 109.47463 * 60.00510 * 15 13 12 36 36 H 1.09004 * 109.47085 * 180.02562 * 15 13 12 37 37 H 1.08998 * 109.47247 * 299.99900 * 15 13 12 38 38 H 1.09003 * 109.47319 * 59.99480 * 16 13 12 39 39 H 1.09003 * 109.47285 * 179.97438 * 16 13 12 40 40 H 1.09002 * 109.46956 * 300.00154 * 16 13 12 41 41 H 1.09002 * 113.61445 * 334.56787 * 17 7 6 42 42 H 1.09002 * 113.61408 * 105.38518 * 17 7 6 43 43 H 1.08002 * 119.99972 * 179.72801 * 18 4 3 44 44 H 1.08995 * 109.46870 * 60.25306 * 20 19 18 45 45 H 0.96705 * 113.99627 * 299.99699 * 21 20 19 46 46 H 1.48504 * 110.00043 * 58.67999 * 22 20 19 47 47 H 1.48490 * 110.00066 * 179.97438 * 22 20 19 48 48 H 1.08000 * 119.92937 * 179.74392 * 23 19 18 49 49 H 1.08006 * 119.99841 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2862 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3005 0.0015 7 6 6.2618 -1.0790 0.0034 8 1 5.7912 -1.7742 0.6986 9 6 6.4729 -1.6629 -1.4034 10 6 7.8387 -2.1697 -0.9024 11 1 7.7984 -3.1625 -0.4544 12 8 8.8886 -2.0347 -1.8622 13 6 9.3890 -3.2792 -2.3552 14 6 8.2554 -4.0524 -3.0319 15 6 10.5033 -3.0149 -3.3697 16 6 9.9443 -4.1026 -1.1914 17 6 7.7938 -1.0274 0.1263 18 6 4.0603 2.5233 0.0058 19 6 3.3030 3.6798 -0.0005 20 6 3.9837 5.0243 -0.0005 21 8 4.7991 5.1454 1.1668 22 14 2.6972 6.3718 -0.0020 23 6 1.9224 3.6057 -0.0015 24 6 1.2933 2.3748 -0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 5.9065 0.8512 0.8910 29 1 5.9066 0.8496 -0.8890 30 1 5.7754 -2.4624 -1.6536 31 1 6.5463 -0.9056 -2.1840 32 1 7.8598 -3.4658 -3.8610 33 1 8.6371 -5.0015 -3.4083 34 1 7.4617 -4.2407 -2.3088 35 1 11.3108 -2.4643 -2.8873 36 1 10.8847 -3.9642 -3.7461 37 1 10.1081 -2.4281 -4.1989 38 1 9.1507 -4.2909 -0.4682 39 1 10.3255 -5.0521 -1.5674 40 1 10.7518 -3.5517 -0.7093 41 1 8.2298 -0.0963 -0.2358 42 1 8.1627 -1.3124 1.1116 43 1 5.1386 2.5839 0.0107 44 1 4.6069 5.1160 -0.8901 45 1 4.3095 5.0735 1.9977 46 1 1.8209 6.2387 1.1895 47 1 3.3557 7.7027 -0.0015 48 1 1.3342 4.5115 -0.0023 49 1 0.2146 2.3196 -0.0013 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_14598386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:01:46 Heat of formation + Delta-G solvation = -96.431277 kcal Electronic energy + Delta-G solvation = -27871.209973 eV Core-core repulsion = 23960.048398 eV Total energy + Delta-G solvation = -3911.161575 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75138 -40.91727 -39.56680 -39.03447 -38.10346 -37.00068 -33.93152 -31.95349 -31.46878 -29.42693 -28.52640 -28.36482 -28.24235 -26.64433 -26.17292 -24.35512 -22.90470 -22.44245 -20.84165 -20.64595 -19.54958 -18.48826 -18.28213 -17.68912 -17.28584 -17.21538 -16.61148 -16.41262 -16.18289 -16.09672 -15.86126 -15.78271 -15.51078 -15.05834 -14.54802 -14.50297 -14.40165 -14.08854 -13.63660 -13.50605 -13.46797 -13.31330 -13.17744 -13.00618 -12.89479 -12.77266 -12.65795 -12.48965 -12.38568 -12.18972 -12.16534 -11.99603 -11.89194 -11.69937 -11.63533 -11.36730 -11.20100 -10.64393 -10.37662 -9.78341 -8.89062 -4.91161 0.17074 0.27462 1.31093 1.61376 1.96016 2.07954 2.31360 2.55543 2.73396 3.37727 3.44078 3.53936 3.63232 3.73421 3.74658 3.81413 3.89405 3.93531 3.97452 4.07213 4.10692 4.18196 4.22382 4.26224 4.39368 4.40279 4.41348 4.50417 4.57130 4.60966 4.64991 4.67418 4.74599 4.75145 4.75520 4.77454 4.83605 4.90293 4.92630 4.98527 5.01036 5.11008 5.14279 5.16112 5.29393 5.31997 5.35570 5.37397 5.60312 6.05754 6.40047 6.46870 6.54981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.085 3.915 4 C 0.081 3.919 5 O -0.321 6.321 6 C 0.071 3.929 7 C -0.103 4.103 8 H 0.104 0.896 9 C -0.147 4.147 10 C 0.062 3.938 11 H 0.101 0.899 12 O -0.380 6.380 13 C 0.098 3.902 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.177 4.177 17 C -0.122 4.122 18 C -0.154 4.154 19 C -0.118 4.118 20 C -0.083 4.083 21 O -0.549 6.549 22 Si 0.773 3.227 23 C -0.112 4.112 24 C -0.165 4.165 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.139 0.861 44 H 0.123 0.877 45 H 0.386 0.614 46 H -0.279 1.279 47 H -0.304 1.304 48 H 0.154 0.846 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 -1.328 -0.992 3.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.040 3.960 4 C 0.035 3.965 5 O -0.235 6.235 6 C -0.004 4.004 7 C -0.122 4.122 8 H 0.122 0.878 9 C -0.184 4.184 10 C 0.004 3.996 11 H 0.119 0.881 12 O -0.300 6.300 13 C 0.059 3.941 14 C -0.231 4.231 15 C -0.196 4.196 16 C -0.234 4.234 17 C -0.159 4.159 18 C -0.173 4.173 19 C -0.118 4.118 20 C -0.191 4.191 21 O -0.357 6.357 22 Si 0.677 3.323 23 C -0.130 4.130 24 C -0.184 4.184 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.157 0.843 44 H 0.141 0.859 45 H 0.235 0.765 46 H -0.205 1.205 47 H -0.232 1.232 48 H 0.171 0.829 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.773 -0.824 -1.086 3.090 hybrid contribution 0.320 -0.350 1.176 1.268 sum -2.452 -1.174 0.090 2.721 Atomic orbital electron populations 1.23362 0.76433 1.05445 1.02522 1.86155 1.23308 1.26237 1.88932 1.18616 0.89351 0.86094 1.01983 1.18543 0.88809 0.86436 1.02668 1.86137 1.19566 1.28795 1.89008 1.22894 0.77312 0.98362 1.01803 1.22251 0.95427 0.95636 0.98869 0.87755 1.23615 0.97142 1.01128 0.96552 1.23680 0.86616 0.99186 0.90072 0.88136 1.88009 1.52841 1.30138 1.59022 1.21689 0.94063 0.84258 0.94107 1.22445 0.98461 1.01024 1.01197 1.21792 0.96968 1.02980 0.97894 1.22450 1.01692 1.00916 0.98353 1.23196 0.93373 0.99666 0.99686 1.20996 1.00867 0.90219 1.05169 1.20096 0.93850 0.95235 1.02657 1.25270 1.03044 0.99775 0.91018 1.86564 1.37873 1.94641 1.16627 0.93996 0.77364 0.73223 0.87672 1.20970 0.93402 0.97969 1.00652 1.21324 1.01397 0.90450 1.05183 0.87039 0.91447 0.91155 0.91270 0.91599 0.91142 0.90106 0.92495 0.90487 0.92211 0.92223 0.89690 0.92429 0.91901 0.90356 0.92099 0.89198 0.89370 0.84330 0.85943 0.76500 1.20507 1.23234 0.82868 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.33 -2.36 10.28 -79.62 -0.82 -3.18 16 3 C 0.09 0.55 6.70 22.57 0.15 0.70 16 4 C 0.08 0.64 6.70 22.57 0.15 0.79 16 5 O -0.32 -2.91 9.92 -79.60 -0.79 -3.70 16 6 C 0.07 0.24 4.58 71.98 0.33 0.57 16 7 C -0.10 -0.16 4.01 -10.27 -0.04 -0.20 16 8 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 9 C -0.15 -0.38 7.48 31.21 0.23 -0.15 16 10 C 0.06 0.10 2.83 31.21 0.09 0.19 16 11 H 0.10 -0.04 5.55 -2.39 -0.01 -0.05 16 12 O -0.38 -1.93 10.00 -148.98 -1.49 -3.42 16 13 C 0.10 0.14 1.11 -10.80 -0.01 0.13 16 14 C -0.17 -0.02 8.39 71.98 0.60 0.59 16 15 C -0.14 -0.07 8.84 71.98 0.64 0.57 16 16 C -0.18 0.15 8.38 71.98 0.60 0.75 16 17 C -0.12 -0.04 7.46 31.12 0.23 0.20 16 18 C -0.15 -0.73 8.59 22.35 0.19 -0.54 16 19 C -0.12 -0.21 5.39 -19.86 -0.11 -0.31 16 20 C -0.08 -0.01 2.82 71.24 0.20 0.19 16 21 O -0.55 -1.75 12.76 -148.98 -1.90 -3.65 16 22 Si 0.77 -1.70 29.78 68.60 2.04 0.34 16 23 C -0.11 0.06 8.66 22.27 0.19 0.25 16 24 C -0.17 -0.12 9.04 22.35 0.20 0.08 16 25 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 26 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 27 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 28 H 0.07 0.13 7.65 -2.39 -0.02 0.11 16 29 H 0.07 0.18 7.38 -2.39 -0.02 0.16 16 30 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.08 0.36 7.90 -2.39 -0.02 0.35 16 32 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.00 7.02 -2.39 -0.02 -0.02 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.06 -0.10 6.25 -2.39 -0.01 -0.11 16 39 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 42 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.14 0.50 6.30 -2.91 -0.02 0.48 16 44 H 0.12 -0.14 7.96 -2.39 -0.02 -0.16 16 45 H 0.39 -0.88 8.70 -74.05 -0.64 -1.52 16 46 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 47 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 48 H 0.15 -0.87 4.87 -2.91 -0.01 -0.88 16 49 H 0.16 -0.82 6.30 -2.91 -0.02 -0.84 16 Total: 0.00 -15.50 386.61 2.14 -13.36 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 0.33 Total: -4.63 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.77 Total: 4.88 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -5.00 Total: -13.96 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.04 Total: 0.34 kcal Total: -15.50 2.14 -13.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_14598386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.071 kcal (2) G-P(sol) polarization free energy of solvation -15.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds